TCONS_00051016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051016
Unique NameTCONS_00051016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051016 ID=TCONS_00051016|Name=TCONS_00051016|organism=Clytia hemisphaerica|type=transcript|length=1530bp
GTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATTTGCT
GTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAAACGA
AACAGAAAAGTCACATTTGAAAATGGCATCTACTGAACCACTTAGAGTTT
GTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAGCATC
GGTAATGGAGATGTCTTTGGTAAATCTCAGCCAATTACCTTACTCTTATT
GGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAATTAC
AAGATTGCTCTCTTCCCTTACTTCATGAAGTCGTTGGAACTGCTGATCCA
AATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCTATGCC
AAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGCTAAAA
TCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGACGGTC
AAGattttggTTGTAGGAAACCCAGCAAACACTAACTGTCTGATCGCTTC
CAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGTCTCACAAAAT
TAGATCAAAACAGAGCTATTTCACAGGTTGCAATGAGACTCGGTATCAAA
ACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCACACA
ATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCC
CAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATTCTTA
AGGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATC
AAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGT
GGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCACTGAC
GGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGAC
GATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATCAATG
CCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAA
AGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAAAATGGTAA
TATGTATAGTTCGGTGGACTTTGTAGTAAacttctttttagaaaaaatga
aatctttGTCTGCgtaaatttttttgtatttagaATTCTTAATGTTGCTC
GTTTTTAATACAAATTGACGGTTGTAAAATGCATGCTAAGTTTATGAGAT
GTACAATGAATATTAAAGTACTAATAACATAATATCTTCTAATCAAGTTT
TGATGGTTAGGTGGTATTACTTACTAACACTGTTTAAATTTCGTTTacta
taaaatttgaattttatttatcTAACGTTATGCATTTTACACCATTGGAA
TCTTTTTAGTTTTGTAAagtctttatttttaaaatacctctGATTAAAAA
AATGTGCATAAATAAAATGCTGATACAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_192:45588..54583-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051016 ID=TCONS_00051016|Name=TCONS_00051016|organism=Clytia hemisphaerica|type=transcript|length=8996bp|location=Sequence derived from alignment at scaffold_192:45588..54583- (Clytia hemisphaerica)
GTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATTTGCT
GTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAAACGA
AACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATTTTCGTTTG
ATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCCACGATATG
GCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCAACAGCAAA
ACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTTGGGTCACA
AAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGTCTCAACAC
GAATATACACAGACCAGTTCAGACCATAAAATATGACCCATATAAACACG
CACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTACTAACTTA
ACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAAGGGGTTGT
GGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTTGCACCTTC
ATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGTATTGACGA
ACTTTTCCAGGNATGTAATGGTCTTTTGAAGTGCTTGTTCTAAGAGATGA
GTGAATATAATTGTTTTTAGTTTTCAAGAGAAGCAAATTTAATCTTTTTT
CTACAAGATTAACTTTAATATAACGCAAATTATGCATGCAAGTTTTTATT
TAATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGGAATTTCAC
CACAGCAATTCGGCCACCATAATTTTTGCATACAATTCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTCATTGGAAAGTCTATCAGTCATTTTC
TTCTGTCTTCTTTTGAAAGAGTATTGAAAATCGACAAAGCAAAAGCTGAG
CTGATTGCTCACCAAAAGTTTTGCTGTGTGGAGACCATGTATAAACAAAG
ATCATGGAAACTGTTCGGTAAAATATTTGCTTTTCGTTCTGCAAATTACC
GCTCTGGATCTAGCCTCAGTGATCTAATTTTTTATTTGATACTGTAGGAA
ATATTGCTGGATATTTTGCTTTTGATAACAAATTAAAGGTTTAAAATGCT
TTGCTTTTTAAAAAACTTTCGAAATTCTTCAAATCTTTTATATTTTCCAC
TACCACGAATTTCAAATTCTTTTATTTGGAGAATAGGCTAAATCAATGAT
CATGCGCTGTGACGTCATAGTTCACGTGCTCCATGACAAAGTGCATGCGT
GCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATT
TGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAA
ACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATTTTCG
TTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCCACGA
TATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCAACAG
CAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTTGGGT
CACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGTCTCA
ACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCATATAAA
CACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTACTAA
CTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAAGGGG
TTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTTGCAC
CTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGTATTG
ACGAACTTTTCCAGGGGGGTCTGAGCCTTGATTTTCCAGGGGGTTCTCTC
CTCCTAAACTGGCATCAATAGACCTTTTCGCCTTTCCGTCCGCCATCTTG
AATTGTATGCAAAAATACAGGAACAAAAATGTCGTGGTTGGATTTAGTTG
AAATGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGACAACA
AAGCATCTTATAAATAAATATTATAATCATTANGGCCGATGGCTTTTTCC
TTTTTCACAAAATTTCACTTTCCATCCAGGCGTGTCGACCTAATTTTCCA
GGGGATAGTTTGTTATCCAAAATTTCCAGGGGGGTTAGTGAAAAAAGTTT
GTCAATACCCCCTGTATAATTTTTTTTTGGAATAGCCCAATATTGTATTT
GAATTTTCTGGATTTTTCAATTTTTGGTTTAAATTTTTTTAAACAATCAG
CACTCAGGAAGGTCAAAGTTTGCCAGAGGACATGGTCCATCAGATGACAT
AGGTGTGTCGCCCTATTTGGTCAGAAAAATAAAAAATAAATATAAAAACT
CTTTAAAAAAGTTATTTTTAACTTCCTACGAATTTCCATTTTATTTATTA
CAAATTTGGCTTCGAAAACACTATTTGATATTCCCTGGAGCAGCACAAAC
TTGTTGAACTGAATTGGGTTATAAAACTGATCAAACACTCACGATTTTTT
ACAAAATTTCAATTATTGATTTATTACTGTGAGATCGGGTAACTTGCATC
AGTGGAGGCTAACATGCATTGCCATCAAATGAGTGACCAATCAAAGCAGC
AAAATTTCAAAACAAATGAACTACACAGCTCCGCTCGCAATCTACTCTAC
CATTTTTGTTTTGATTTAACTTTGTATTTTATTAAGTCATTCATTTGAGG
GCTATGCATGTTTGCCTCCAATGATGCAAGTTACCCGATCTCACGGTAAA
TGTCAAGAGTTGGGTCAAGCTTGATTTAAAGATTAGTTCAATAAGTTTGA
TTGATCGTGACTTCACTTTTTTTATAGGCAAAAGCTTGTTAATCCTCGTT
AATCCTGGGTCAGAGCAGGATTAATATTTGGCCAATTTAATCAGAATTTA
ATCCAGATTTAAGCCTATTTTTTTTCGAACAACTGACGATTCTGCATTAA
TCGGCGCTAACAGGCGCTAATCGAGATTTAATCGAAAATTAAGCTAATCG
GCCGCTAATCCACTTTTGAACAACCGTGCCCTTGACAATAAAAATTGAGT
TTTGAATTCTTTTATATTTCAGGCATCTACTGAACCACTTAGAGTTTGTG
TCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAGCATCGGT
AATGGAGATGTCTTTGGTAAATCTCAGGTTGGTCTTATTGATTATTTTGT
TATAATAGAAAGTTTTAACATTTTAAATTGATGTTGATACTTCATATCAA
TCAAATAATCCTGTTCTAAGCAATGATCAGTCTACATCATTCTCCATACC
CTCAAGAGAGTCAAAAAATATTGTGTCTGATATTTCCCTGTTCTCTTTTT
ATTCTAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATGCCAG
TCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTTACTT
CATGGTAAGTTCAGCCATCGTTATCATCAAAAATTAAGAATTGTTTTTAT
TTATTTACTAAACAGTTGGTTGACAAGTCTTTGGCATTCGATTTTTTTTG
TGAAATGGTTTGGTTTTTAATCTCTCTTCTCCTAATTAGAATTCTTCAAT
TTTACTAAAATAACAAGAGAATTTTGAAGGAGAGTTTTTGGTATTTATCG
TAATCTGTTTAATGTTTATTATTTGTAGAAGTCGTTGGAACTGCTGATCC
AAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCTATGC
CAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGCTAAA
ATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGACGGT
CAAGGTACATTTTTCTTTACTTCCTCTTCCCATGATAAATGTAAACAACA
TTGTGACAAATTGCACTTCTTGTTTGTTGGCCACAATATCCTTCCTCTAT
TCTTGAACAACAAGATTCGAACTCCTCCCTAGTAATGCCCCTCTTCAGCC
CCTCTCAATCCCCGATCAAATTTCAATATTTTCTTAACTTTTTTTAATGG
ATATGTTGTAAAAGATTTTTTAGAATGTAACCGTCAATTCTTTTCATTTC
ATTTAAAAAATATTTTACCTGTAAGTTAATTAATTTAATGTTTCTTACTT
TTTCTTTAGATTTTGGTTGTAGGAAACCCAGCAAACACTAACTGTCTGAT
CGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGTCTCA
CAAAATTAGATCAAAACAGAGCTATTTCACAGGTAATTTCGTTATCTGGG
TTCAAGATTTAGAAGATTATGAAATTTTATTAAAAGCATAATACGTTAGA
CAGTTTTTGGGCCGTTCAAAACTTGCTTTATTAAATTTGTTTTGTTACAA
AAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAATGTCTAG
AACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAACAATGTTT
GATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAGCAAG
GTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTCAACA
CGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTGTTA
AAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAAGCTGTTC
GTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAATAGCGAGT
TTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGTTGACATG
GGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACACCAAGAT
ACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAACATCAACA
ATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGATATCCTC
CGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCTCCACAAT
GTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTGATATGAA
ATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATATGACACAT
TTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAACGCGTGG
TGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGA
AAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGT
GAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAATCCC
TGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAAT
ACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATG
GATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTT
CTTGAAAAAGGAATGAGTTAAANACTTGCTTTATTAAATTTGTTTTGTTA
CAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAATGTC
TAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAACAATG
TTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAGC
AAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTCA
ACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTG
TTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAAGCTG
TTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAATAGCG
AGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGTTGAC
ATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACACCAA
GATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAACATCA
ACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGATATC
CTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCTCCAC
AATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTGATAT
GAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATATGACA
CATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAACGCG
TGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTG
CGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAA
GGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAAT
CCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACA
AATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAG
ATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGC
GTTCTTGAAAAAGGAATGAGTTAAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATCGTTTAATCA
TATTTCTTTTATTGAATTTAAAATAGAAAAACATCTTTTGAATGAACACC
TGGCTTTCAAAAGAGAAGAAAGGAAATCTATCAACCTGTTATAAGGCATT
TCTCCTTATCGCTCCTTTTATTTACTTGATTTTTTTCTCTCGCGCCAGAT
TTAATTCGAGACCCGTGTATTAAAGTGTGATATGAAATCCGATCCTCAAA
TCACATCTTTAAAAAGACATATTTCATATGACACATTTAATAATCCTGCA
TAACTTCCTGTTTTTATAGACTGTTCAAACGCGTGGTGCGGCCATCATAA
AAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGAC
CACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCAT
GGGTGTTATCACTGACGGCACACATTACGGAATCCCTGAAGATATCGTTT
ATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATACACAATCGTCGAT
GGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAA
GGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAAT
GAGTTAAAAATGGTAATATGTATAGTTCGGTGGACTTTGTAGTAAACTTC
TTTTTAGAAAAAATGAAATCTTTGTCTGCGTAAATTTTTTTGTATTTAGA
ATTCTTAATGTTGCTCGTTTTTAATACAAATTGACGGTTGTAAAATGCAT
GCTAAGTTTATGAGATGTACAATGAATATTAAAGTACTAATAACATAATA
TCTTCTAATCAAGTTTTGATGGTTAGGTGGTATTACTTACTAACACTGTT
TAAATTTCGTTTACTATAAAATTTGAATTTTATTTATCTAACGTTATGCA
TTTTACACCATTGGAATCTTTTTAGTTTTGTAAAGTCTTTATTTTTAAAA
TACCTCTGATTAAAAAAATGTGCATAAATAAAATGCTGATACAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051016-exon-scaffold_192-1575043694:54459..54583TCONS_00051016-exon-scaffold_192-1575043694:54459..54583Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:51307..51411TCONS_00051016-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:51030..51126TCONS_00051016-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:50630..50805TCONS_00051016-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:50202..50324TCONS_00051016-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:49934..49975TCONS_00051016-exon-scaffold_192-1575043694:49934..49975Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:48696..48830TCONS_00051016-exon-scaffold_192-1575043694:48696..48830Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1575043694:45588..46314TCONS_00051016-exon-scaffold_192-1575043694:45588..46314Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:54459..54583TCONS_00051016-exon-scaffold_192-1510915933:54459..54583Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:51307..51411TCONS_00051016-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:51030..51126TCONS_00051016-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:50630..50805TCONS_00051016-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:50202..50324TCONS_00051016-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:49934..49975TCONS_00051016-exon-scaffold_192-1510915933:49934..49975Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:48696..48830TCONS_00051016-exon-scaffold_192-1510915933:48696..48830Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1510915933:45588..46314TCONS_00051016-exon-scaffold_192-1510915933:45588..46314Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:54459..54583TCONS_00051016-exon-scaffold_192-1491911889:54459..54583Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:51307..51411TCONS_00051016-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:51030..51126TCONS_00051016-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:50630..50805TCONS_00051016-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:50202..50324TCONS_00051016-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:49934..49975TCONS_00051016-exon-scaffold_192-1491911889:49934..49975Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:48696..48830TCONS_00051016-exon-scaffold_192-1491911889:48696..48830Clytia hemisphaericaexon
TCONS_00051016-exon-scaffold_192-1491911889:45588..46314TCONS_00051016-exon-scaffold_192-1491911889:45588..46314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:45588..54583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.2093	28.1818	9.26398	27.642	0.652422	4.36457	1.21733	0.895118	0.00125969	1.51483	0.0419102	0.329386	0.0395229	6.44782	0.0507645	0.182998	0.172974	0.237274	0.0520033	4.70737	15.3946	9.1997	3.96709	13.2201	0.049855	0.00674117	15.489	1.84671	6.07968	3.96192
Blast
[Close]
BLAST of TCONS_00051016 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 493.041 bits (1268), Expect = 3.528e-172
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 3 
Query:  132 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1124
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC3.528e-17269.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
back to top