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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051036 ID=TCONS_00051036|Name=TCONS_00051036|organism=Clytia hemisphaerica|type=transcript|length=2914bp
ATTGCATGATAGTGAACTATTTACATTCTTGATTTCATGAAATAAGTTAT
ACATAAAACCATAATCTATCCAACTATATAAGATTCTATTCCTATCCATG
ATAATGATGAGTGGATTTTTCGTTCGCATGCAACCCCAACATATTCCCAA
AAGACATGAAAACACGAAATAAACCCTCTTCTCTCACTATAGCCATATGA
ATATGTCCAATAGCTGGATAACTTGTTATATCGACATAATTTgtgatttt
gaaatcaaaaggaaaacaGAAATCACAAGGTTCTTCAAAATTCTCCATCG
GTTGGCGATCCATGCGCCATGACTCATAACCGTTTCGCCTTCGAGGATGG
GGGACATCCTCAATCCGTTTTACCCCTGGCAGTGTTATAAAGAAATGTTC
GATCTCTAAATCATCATCATTCTTATTAGGATAATAAGACCGTAACCTTT
CCATCATTAACATTCGATTAAGACATTGATCACCTTAATATTGACAATGA
CTAAACCCATCAAATGaagaattcttttttattggattattatcttcttc
attttcactaTCATCGTCGCTTCTTTCGCTGTCGCTCGATTCAGAATCAG
GATCAGGCCATGAATCATCTTCCTCAATTTCGTACTTTTCAAGGAGACCA
TTTCTTAAAATGAAACGATTGAATACATACGTGGAACAATTGTTACTCAA
TTTCCAGGAAATCTCCTCATCCCCAGGAAAGCAAACACAATAATCACGGC
GTTCGATTTGGAcagatttttctaattttcggACAACCAACGCGCTTGGA
CAATTCTTTGCCATTCCTCGTTGGCGTTCAACAAATTCGAAAGGAAACGC
AAGAAAGTCCGCGTCTTCCTCATGATGCGATTTACTTAGAACTTGTTGGC
GCTGGATGGCCAAAAGCGTCTCTTTGGGAGCCAGTCCCATACTAAACTCG
TAATGCTTTCTTTCTACAGATTCACCATTACGATCTTTCTcgtttttaaa
caatagaaagcAATTATCCCATCTTGTGAACATGCGTTGTACACCTTTCA
CTTGTAAGTCCCTCTCACAGTCTTTATATAATAATTGTTGCCGTGTCCTT
GACTGGTCTTCATATTGACTCAGATCAACATCATCATATTCTTTTGtaat
ttcaaaacaacattttcgCTCTGAGTGTACGTCAATACCAAAATACTCCA
TTGCATAATTTGCAGACATAAATCTCCGGTCGACGCTGTGAAATAAATCG
CGAAGCGGTTTACGTTCGTCCGCGTCTTGTTGCCGCACGAGAAACACATC
ACCATCAGGTAAGGGCGAATAGGTGAACACACAATGCAGGATTTCTTCCA
ATGCAATTTCCTCAGCTGTTTTCAGTTCTGGATGAAACAAAATCAAATAG
TGCAAATCTCGATCAACATTACCAAGCAATATCAGGCTGTAGATCGTACT
CAACAACGCAGCTTttggtaaatctttttcaatttttgttgaaTTCTTAA
ACGTAAATTCAGTTGATACACCGTTATGGTGACATAACTCTGGAACAAAA
ACAGCTCGTTTTAACATCATCTTATAAATGGTTACAAGCTCTGGAAACGC
TTTCGTTAAATGACGACAATCACTGGCGGGAAGATGTTCGAAGATTCGCA
GCCAAACATGATCAGGTAAGAAAACTTTGCATTTCTCAATCAAAGGTTGA
TCAACCTGATTTTCCGAATCACTTATCATGGTCTCAGAGTTTGTTTTGGC
TTCAGGTTGTGATATCACAGGATAAGTATATTTAGTGTTTAGAATCGATT
CCATACGATCGTACAAATATCTTTCATCAGGAATATCACTCGCATATTCA
TCAGAAACTTCCTTACCGGCAGCCAGACACGATCGAATCTGGTCTGTAAA
TTCTTCATATTGATTTCCACGGAAACTCGACACACAGGAATCGTGCGACA
TCTTTTCCTCTGCTGGAATTGACCATTGGAATTTTTCATCTCCAGTTCGG
TCAAACATTAAATCGCATTTCAAGAACCACTTTTGATCTTCAGTTCCTCT
TGAGAGGTTCAAATGATGATAAATTGTATCTTGTCGGATCAAAAGCACAT
CTCCGGCTTTCGGTTTATAAGTAAATGTTTGAAGACAATTTGCACTCTCA
TACGCTGCAATTAGCTGTTTATTAGTCTTATTACGTCGTTCAATCGAATT
AAAATAAACATTAGGAATGAAAAACTCTATTTCACCTTCTTCAAAATCGC
TGTTCAAAAAAATCAAACACGTGTACAAAGAGCGATGATCGGTATCAGGA
CAGAATTGCCCGTCTATTTGGGGTCGATTCGCGTGAAGATTGAAACGCCA
ATAATCATTATGTCTATGTAATGTCAATCCATGATGTAATCCGCATGGCA
TCCAGTTGCCTCTCAGTGTATCAAAACCAAGCATTTTGGTTTCCTTACGA
TGTGCGTTAAAGTTGGCTTCTAAGCTACACCATAGCATATCTACAAAGGG
TTTATCGTGAATGATTGCTGTTTTACGATACGTTTTATTGCAAACTAGCC
CGAGCTCGTTATCAAGATTTTCCAGTCTAGTTAGCATTTCAGAGCATTGG
CTTGTGGAGTAGATAGGCTCTGTTGATTGTAAAACACCGTCTCCAAGTTG
GGTTAGTGTTGTAGAGTTCGGTAACGGAGTAACAGTTTCATCTAAAAGAT
GGAAAATTCGTTGGTCATCACCAGTATATTTTAATGGTGTATCTGTCATG
AGATATGGCTTACCAATCATATCAACAGCTTGAGTGTGTGCATGGTAGAA
TCGAATGTTGtgaaacatagattcatttcgtTCCCATAGCTTCTTCATGA
TCAAATTGTTTTCAGCCATGTTTTGgatttaatttatatttttctatttt
gtactAGGTAgctg Run BLAST on NCBI protein sequence of TCONS_00051036-protein >TCONS_00051036-protein ID=TCONS_00051036-protein|Name=TCONS_00051036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp
MAENNLIMKKLWERNESMFHNIRFYHAHTQAVDMIGKPYLMTDTPLKYTG
DDQRIFHLLDETVTPLPNSTTLTQLGDGVLQSTEPIYSTSQCSEMLTRLE
NLDNELGLVCNKTYRKTAIIHDKPFVDMLWCSLEANFNAHRKETKMLGFD
TLRGNWMPCGLHHGLTLHRHNDYWRFNLHANRPQIDGQFCPDTDHRSLYT
CLIFLNSDFEEGEIEFFIPNVYFNSIERRNKTNKQLIAAYESANCLQTFT
YKPKAGDVLLIRQDTIYHHLNLSRGTEDQKWFLKCDLMFDRTGDEKFQWS
IPAEEKMSHDSCVSSFRGNQYEEFTDQIRSCLAAGKEVSDEYASDIPDER
YLYDRMESILNTKYTYPVISQPEAKTNSETMISDSENQVDQPLIEKCKVF
LPDHVWLRIFEHLPASDCRHLTKAFPELVTIYKMMLKRAVFVPELCHHNG
VSTEFTFKNSTKIEKDLPKAALLSTIYSLILLGNVDRDLHYLILFHPELK
TAEEIALEEILHCVFTYSPLPDGDVFLVRQQDADERKPLRDLFHSVDRRF
MSANYAMEYFGIDVHSERKCCFEITKEYDDVDLSQYEDQSRTRQQLLYKD
CERDLQVKGVQRMFTRWDNCFLLFKNEKDRNGESVERKHYEFSMGLAPKE
TLLAIQRQQVLSKSHHEEDADFLAFPFEFVERQRGMAKNCPSALVVRKLE
KSVQIERRDYCVCFPGDEEISWKLSNNCSTYVFNRFILRNGLLEKYEIEE
DDSWPDPDSESSDSERSDDDSENEEDNNPIKKNSSFDGFSHCQY Run BLAST on NCBI transcript from alignment at scaffold_192:37666..40579 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051036 ID=TCONS_00051036|Name=TCONS_00051036|organism=Clytia hemisphaerica|type=transcript|length=2914bp|location=Sequence derived from alignment at scaffold_192:37666..40579 (Clytia hemisphaerica)
cagcTACCTagtacaaaatagaaaaatataaattaaatcCAAAACATGGC
TGAAAACAATTTGATCATGAAGAAGCTATGGGAacgaaatgaatctatgt
ttcaCAACATTCGATTCTACCATGCACACACTCAAGCTGTTGATATGATT
GGTAAGCCATATCTCATGACAGATACACCATTAAAATATACTGGTGATGA
CCAACGAATTTTCCATCTTTTAGATGAAACTGTTACTCCGTTACCGAACT
CTACAACACTAACCCAACTTGGAGACGGTGTTTTACAATCAACAGAGCCT
ATCTACTCCACAAGCCAATGCTCTGAAATGCTAACTAGACTGGAAAATCT
TGATAACGAGCTCGGGCTAGTTTGCAATAAAACGTATCGTAAAACAGCAA
TCATTCACGATAAACCCTTTGTAGATATGCTATGGTGTAGCTTAGAAGCC
AACTTTAACGCACATCGTAAGGAAACCAAAATGCTTGGTTTTGATACACT
GAGAGGCAACTGGATGCCATGCGGATTACATCATGGATTGACATTACATA
GACATAATGATTATTGGCGTTTCAATCTTCACGCGAATCGACCCCAAATA
GACGGGCAATTCTGTCCTGATACCGATCATCGCTCTTTGTACACGTGTTT
GATTTTTTTGAACAGCGATTTTGAAGAAGGTGAAATAGAGTTTTTCATTC
CTAATGTTTATTTTAATTCGATTGAACGACGTAATAAGACTAATAAACAG
CTAATTGCAGCGTATGAGAGTGCAAATTGTCTTCAAACATTTACTTATAA
ACCGAAAGCCGGAGATGTGCTTTTGATCCGACAAGATACAATTTATCATC
ATTTGAACCTCTCAAGAGGAACTGAAGATCAAAAGTGGTTCTTGAAATGC
GATTTAATGTTTGACCGAACTGGAGATGAAAAATTCCAATGGTCAATTCC
AGCAGAGGAAAAGATGTCGCACGATTCCTGTGTGTCGAGTTTCCGTGGAA
ATCAATATGAAGAATTTACAGACCAGATTCGATCGTGTCTGGCTGCCGGT
AAGGAAGTTTCTGATGAATATGCGAGTGATATTCCTGATGAAAGATATTT
GTACGATCGTATGGAATCGATTCTAAACACTAAATATACTTATCCTGTGA
TATCACAACCTGAAGCCAAAACAAACTCTGAGACCATGATAAGTGATTCG
GAAAATCAGGTTGATCAACCTTTGATTGAGAAATGCAAAGTTTTCTTACC
TGATCATGTTTGGCTGCGAATCTTCGAACATCTTCCCGCCAGTGATTGTC
GTCATTTAACGAAAGCGTTTCCAGAGCTTGTAACCATTTATAAGATGATG
TTAAAACGAGCTGTTTTTGTTCCAGAGTTATGTCACCATAACGGTGTATC
AACTGAATTTACGTTTAAGAAttcaacaaaaattgaaaaagatttaccaa
AAGCTGCGTTGTTGAGTACGATCTACAGCCTGATATTGCTTGGTAATGTT
GATCGAGATTTGCACTATTTGATTTTGTTTCATCCAGAACTGAAAACAGC
TGAGGAAATTGCATTGGAAGAAATCCTGCATTGTGTGTTCACCTATTCGC
CCTTACCTGATGGTGATGTGTTTCTCGTGCGGCAACAAGACGCGGACGAA
CGTAAACCGCTTCGCGATTTATTTCACAGCGTCGACCGGAGATTTATGTC
TGCAAATTATGCAATGGAGTATTTTGGTATTGACGTACACTCAGAGcgaa
aatgttgttttgaaattaCAAAAGAATATGATGATGTTGATCTGAGTCAA
TATGAAGACCAGTCAAGGACACGGCAACAATTATTATATAAAGACTGTGA
GAGGGACTTACAAGTGAAAGGTGTACAACGCATGTTCACAAGATGGGATA
ATTgctttctattgtttaaaaacgAGAAAGATCGTAATGGTGAATCTGTA
GAAAGAAAGCATTACGAGTTTAGTATGGGACTGGCTCCCAAAGAGACGCT
TTTGGCCATCCAGCGCCAACAAGTTCTAAGTAAATCGCATCATGAGGAAG
ACGCGGACTTTCTTGCGTTTCCTTTCGAATTTGTTGAACGCCAACGAGGA
ATGGCAAAGAATTGTCCAAGCGCGTTGGTTGTccgaaaattagaaaaatc
tgTCCAAATCGAACGCCGTGATTATTGTGTTTGCTTTCCTGGGGATGAGG
AGATTTCCTGGAAATTGAGTAACAATTGTTCCACGTATGTATTCAATCGT
TTCATTTTAAGAAATGGTCTCCTTGAAAAGTACGAAATTGAGGAAGATGA
TTCATGGCCTGATCCTGATTCTGAATCGAGCGACAGCGAAAGAAGCGACG
ATGAtagtgaaaatgaagaagataataatccaataaaaaagaattcttCA
TTTGATGGGTTTAGTCATTGTCAATATTAAGGTGATCAATGTCTTAATCG
AATGTTAATGATGGAAAGGTTACGGTCTTATTATCCTAATAAGAATGATG
ATGATTTAGAGATCGAACATTTCTTTATAACACTGCCAGGGGTAAAACGG
ATTGAGGATGTCCCCCATCCTCGAAGGCGAAACGGTTATGAGTCATGGCG
CATGGATCGCCAACCGATGGAGAATTTTGAAGAACCTTGTGATTTCtgtt
ttccttttgatttcaaaatcacAAATTATGTCGATATAACAAGTTATCCA
GCTATTGGACATATTCATATGGCTATAGTGAGAGAAGAGGGTTTATTTCG
TGTTTTCATGTCTTTTGGGAATATGTTGGGGTTGCATGCGAACGAAAAAT
CCACTCATCATTATCATGGATAGGAATAGAATCTTATATAGTTGGATAGA
TTATGGTTTTATGTATAACTTATTTCATGAAATCAAGAATGTAAATAGTT
CACTATCATGCAAT Coding sequence (CDS) from alignment at scaffold_192:37666..40579 >TCONS_00051036 ID=TCONS_00051036|Name=TCONS_00051036|organism=Clytia hemisphaerica|type=CDS|length=2385bp|location=Sequence derived from alignment at scaffold_192:37666..40579 (Clytia hemisphaerica)
ATGGCTGAAAACAATTTGATCATGAAGAAGCTATGGGAacgaaatgaatc
tatgtttcaCAACATTCGATTCTACCATGCACACACTCAAGCTGTTGATA
TGATTGGTAAGCCATATCTCATGACAGATACACCATTAAAATATACTGGT
GATGACCAACGAATTTTCCATCTTTTAGATGAAACTGTTACTCCGTTACC
GAACTCTACAACACTAACCCAACTTGGAGACGGTGTTTTACAATCAACAG
AGCCTATCTACTCCACAAGCCAATGCTCTGAAATGCTAACTAGACTGGAA
AATCTTGATAACGAGCTCGGGCTAGTTTGCAATAAAACGTATCGTAAAAC
AGCAATCATTCACGATAAACCCTTTGTAGATATGCTATGGTGTAGCTTAG
AAGCCAACTTTAACGCACATCGTAAGGAAACCAAAATGCTTGGTTTTGAT
ACACTGAGAGGCAACTGGATGCCATGCGGATTACATCATGGATTGACATT
ACATAGACATAATGATTATTGGCGTTTCAATCTTCACGCGAATCGACCCC
AAATAGACGGGCAATTCTGTCCTGATACCGATCATCGCTCTTTGTACACG
TGTTTGATTTTTTTGAACAGCGATTTTGAAGAAGGTGAAATAGAGTTTTT
CATTCCTAATGTTTATTTTAATTCGATTGAACGACGTAATAAGACTAATA
AACAGCTAATTGCAGCGTATGAGAGTGCAAATTGTCTTCAAACATTTACT
TATAAACCGAAAGCCGGAGATGTGCTTTTGATCCGACAAGATACAATTTA
TCATCATTTGAACCTCTCAAGAGGAACTGAAGATCAAAAGTGGTTCTTGA
AATGCGATTTAATGTTTGACCGAACTGGAGATGAAAAATTCCAATGGTCA
ATTCCAGCAGAGGAAAAGATGTCGCACGATTCCTGTGTGTCGAGTTTCCG
TGGAAATCAATATGAAGAATTTACAGACCAGATTCGATCGTGTCTGGCTG
CCGGTAAGGAAGTTTCTGATGAATATGCGAGTGATATTCCTGATGAAAGA
TATTTGTACGATCGTATGGAATCGATTCTAAACACTAAATATACTTATCC
TGTGATATCACAACCTGAAGCCAAAACAAACTCTGAGACCATGATAAGTG
ATTCGGAAAATCAGGTTGATCAACCTTTGATTGAGAAATGCAAAGTTTTC
TTACCTGATCATGTTTGGCTGCGAATCTTCGAACATCTTCCCGCCAGTGA
TTGTCGTCATTTAACGAAAGCGTTTCCAGAGCTTGTAACCATTTATAAGA
TGATGTTAAAACGAGCTGTTTTTGTTCCAGAGTTATGTCACCATAACGGT
GTATCAACTGAATTTACGTTTAAGAAttcaacaaaaattgaaaaagattt
accaaAAGCTGCGTTGTTGAGTACGATCTACAGCCTGATATTGCTTGGTA
ATGTTGATCGAGATTTGCACTATTTGATTTTGTTTCATCCAGAACTGAAA
ACAGCTGAGGAAATTGCATTGGAAGAAATCCTGCATTGTGTGTTCACCTA
TTCGCCCTTACCTGATGGTGATGTGTTTCTCGTGCGGCAACAAGACGCGG
ACGAACGTAAACCGCTTCGCGATTTATTTCACAGCGTCGACCGGAGATTT
ATGTCTGCAAATTATGCAATGGAGTATTTTGGTATTGACGTACACTCAGA
GcgaaaatgttgttttgaaattaCAAAAGAATATGATGATGTTGATCTGA
GTCAATATGAAGACCAGTCAAGGACACGGCAACAATTATTATATAAAGAC
TGTGAGAGGGACTTACAAGTGAAAGGTGTACAACGCATGTTCACAAGATG
GGATAATTgctttctattgtttaaaaacgAGAAAGATCGTAATGGTGAAT
CTGTAGAAAGAAAGCATTACGAGTTTAGTATGGGACTGGCTCCCAAAGAG
ACGCTTTTGGCCATCCAGCGCCAACAAGTTCTAAGTAAATCGCATCATGA
GGAAGACGCGGACTTTCTTGCGTTTCCTTTCGAATTTGTTGAACGCCAAC
GAGGAATGGCAAAGAATTGTCCAAGCGCGTTGGTTGTccgaaaattagaa
aaatctgTCCAAATCGAACGCCGTGATTATTGTGTTTGCTTTCCTGGGGA
TGAGGAGATTTCCTGGAAATTGAGTAACAATTGTTCCACGTATGTATTCA
ATCGTTTCATTTTAAGAAATGGTCTCCTTGAAAAGTACGAAATTGAGGAA
GATGATTCATGGCCTGATCCTGATTCTGAATCGAGCGACAGCGAAAGAAG
CGACGATGAtagtgaaaatgaagaagataataatccaataaaaaagaatt
cttCATTTGATGGGTTTAGTCATTGTCAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051036-exon-scaffold_192-1491911889:37666..40579 | TCONS_00051036-exon-scaffold_192-1491911889:37666..40579 | Clytia hemisphaerica | exon |
| TCONS_00051036-exon-scaffold_192-1510915933:37666..40579 | TCONS_00051036-exon-scaffold_192-1510915933:37666..40579 | Clytia hemisphaerica | exon |
| TCONS_00051036-exon-scaffold_192-1575043694:37666..40579 | TCONS_00051036-exon-scaffold_192-1575043694:37666..40579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_192 | supercontig | scaffold_192:37666..40579 . |
Blast
The following BLAST results are available for this feature:
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