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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051044 ID=TCONS_00051044|Name=TCONS_00051044|organism=Clytia hemisphaerica|type=transcript|length=1116bp
CAACAGATCAAGCAGCTTTTAACATGGACATGGAAGGATTTGATGGTAAA
AGTGTCGAAGAAGTTACCAACTGGCTAACGATGAAGTTTAATCCAGCTAT
GGCTCAAAAGTTCAATGTTAATGGTATTGATGGTGATAATCTCAAGGAGA
TCATCACTTGTAAGGAACATCAATTCCGAATGCTTGAGATGGCTGGCATA
AGCCTAAAGGAAATTTTGGCATTCAGAAAAGCATTTAAAAGTCATCAACC
TCAGTCCACCAATGAATCAAACCCATCTACACCAGATTTGCAAACAATGg
aagatttttttaataaaaaccaacgTTCCGTCATATGTAGCGAATCAAAA
CGGTACTGGCCAAAAGGACCTCTACCAACATTCACCACACCTGAAGACGG
GGTGAGTTGAACAAGTTAGCTGAAGAGCTCAAACTGAATCCTAATGTTGG
ccctttaaaagtttctgagatAAAAAGCTAACTTTTGTCACACATGATAT
CGAAAAGACGAAAACTGCGAACCAAAAAAAACGAAGAGAGCACCCCTGGT
ACAAATTCAAGTCCACCAAATTCATCCATTCTCATCACAGCAAAGATAAA
GGCAATGAGACGTAAACGATGATGAAAATGCTCAGGTACTCCATTGAGTT
GGATCGAGTTATGTattactaaagtctgttcaaaaaaaattggcagttCG
CACATTTTCATTCATTGCTCTCGAAAGAGACAagatatattgaaaaataa
tacctCCTTGGAAAGATAATTCTGAGCGGAATATTTTGAggctttaaaat
cttttaaaaactttgaaaatgaagatgaaaaattaagaagaaaaaaataa
acattttatctACATGAACCGTAAATcatgtgcccaagttcaggaattgc
cataaagccattatggtaataaccgggagggcacattgctatacaatGTA
TCTACATGaataaaaatctttaatttacgtttttctaaaacttcgcagat
ttcaaatatgtattcAGAAGTTTTATATCTGTCTAATACCGAAAGTTCCA
CTTTGGAGGGCAGGAATTTTTGACCCAAGAcagcggcggatctgaggggg
ttcaaatggttcagct Run BLAST on NCBI transcript from alignment at scaffold_193:85734..91115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051044 ID=TCONS_00051044|Name=TCONS_00051044|organism=Clytia hemisphaerica|type=transcript|length=5382bp|location=Sequence derived from alignment at scaffold_193:85734..91115+ (Clytia hemisphaerica)
CAACAGATCAAGCAGCTTTTAACATGGACATGGAAGGATTTGATGGTAAA
AGTGTCGAAGAAGTTACCAACTGGCTAACGATGAAGTTTAATCCAGCTAT
GGCTCAAAAGTTCAATGGTATATCAAGCTAAATTTATATTTCATTTATCT
ATTAGTTCCTTAGCTTATCttgattcttttaataaagattttctttGACA
CACAGGACACACAATTTGCGTCTAAAAGCGAAGTGAGATATTTTTAGCAA
GAAGGAAGAATTGGATCCCTTCCTGTTTTGTGTTTATGCATCAGGCTGAT
GGAGACTTGATCCCCTCCTGTCTTGATGTTAATGATCTCATGAGCGCCGC
ATTTGGAATATTAATCACTGGTGCTTGCGAAACTCAGCTAAAGGGAAAAT
TTAGAGATTGGAATATACTTGTTACATGGGCGTAGCTATAGCACAGCTTC
TCAAGCTCAAGTGGTGATTTAAAAAGTTTGGCCGCATGTCTGACTGAAAC
TAGGATGGACGTAAGTCCCGACTTTTCACTGTTGAGTTATGAGGGTATAT
TCTTTCCATAGATCAGATTCTTTGAATAAAGACAAGCTTTTCTCTTGTGC
TATTTTTGACAGTCAATGTTTGTTGACATACTGCAATTGATGGAATTTCC
TGACCGACACATATGTGTTTGCATGGGCATTAAGGAAAACATTGTTTAGG
GATCAAGGGTGATTTTTTACCGTTGATTCATAGCTTCTACGCCCCTACAT
TTAGTgggggtcttgggttttgatgaaccaaaagcaagggggtGTTAGNA
CCGTTGATTCATAGCTTCTACCCCCCCTACATTTAGTgggggtcttgggt
tttgaggaaccaaaagcaagggggtgttaaaagtatgactttcctagggg
gttgccagttaagggggggggtcttcttacctaaggggggtcttccttga
attatgcgaaatttcaatcattttatttatactgattttctaagggggtg
tgaaattttaaataaatttcctaaggggggttagcacttaaggggggggg
gtcctcttacctaaggggggtcttgacccctctagaaactatgtgATTGT
GTATAGATTGGAATTGATGGATGGTAAAAGAGGATTACTGTCTACACATC
TCGATAGAATTGTATGCCTAGTTTGGATTGAATGATATACCTTGGGGATT
AATATTTGTGGGAATTTATTTAACTATGCTTCTTAATTAGCATTGGTTAT
ACCTGATGATACCTGAGGTACCTTGAGCTCCCCCAATAAATGTCTGTACA
TCCTGGGGGTGGAGATATGGTCTAAGggtaggaaaatggtcaaaattgga
GGGGGTTTTTACTCTGTTATAGAGCAGATTTGCCAATAGTTTAGTACTCT
GGCGCTGGCTCAAAGTCTTGACAGGTTGTGATAttcttttattctaaatg
gaAGGCTCAagcatagcctggatatccgagctcaaaattttagaaaNAag
catagcctggatatccaagctcaaaattttagaaaaaataagttttacct
cagccagacaaagttctaaaattatagagcttggttcacctagaaatcgg
gtgaacccctgttgagggattttcctgcatgaatcccatggctgcaaata
aatatatgcacataatgacatgcataatttcaagatggtaccccagcagt
gataaatcaatttagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttg
taaaataggcagtcgaactctattagctttaaagctagtacagatttgta
cacatttttcgactttaaagaatatatacattaacattagatgagaatgc
agacaatctaggtaaaccagaccgtaaacataagaaatatcaaaatcaaa
aagaagtttacgggctggatatccaggctagctcAAGCAACGCACTCTGA
ACTTATCTCATTGATAAGAATCATTTCAATCTCCTTTTCATTTTACCATA
TTAACCCAGTTATTGACTTTTACATCTTTTTCGCCTGGGTGACTTGCAGA
AAAATAGTACAATGTCCCATCCGCAACAAAAGCTCCATTTATGAGATATC
AAGATCTTGGAACTAGAGGACCCCCATNCAATGTCCCATCTGGGAACTAG
AGGACccccatttttgttttgttgtgacATATTAAATGGTTTCTTGAGTT
AAAGACATTTATTGCCTTTAAATGatctattttgaattttttaattggTA
AAAACTAATACGGTCCAAAAATTTGTCCCGTCCGCAACGGCACAAAAGTc
ttaatttctctttttttgagaCAAATTTAATGTTCTAACTGTATCAAGCC
AATGAACTATAGGGAACCACATGCTTTTTGCAGCAGtatcatttttcttg
actttacATGTACCGGCTATGagtgaaaaactttttgtcctGTCCGCAAC
AAAGTGTCTCGTCCGTAACATTTTTCTCAAGATTAGGGctgtaacaaaaa
aaaatctataacaATCCAAAGAAGGCTATTTAGTAGGGTTCACAAAAATG
TGAAGTTCTTAGAAATTGCATTTGCCAAAGTTGAGTTATAGGTCCTCAAA
AAGTGCCTGATGCTGACGcaacatttttaatttcatttttcatatcctCT
GGCAGTAAGGATAACAAAAATGCAAgctggaaaatgtttttgataaatta
tCAAACAGTAAAGTTGATCATCTTTTTAAAAGCCTTATTTTCCGTtcaca
ttttcaaagaaaacctCCTCTTGAAAGATTTGGGTATATATCTTTTATAT
CAgaaaaaatgactgtttaaAAGCTTGCCCTTATCAAGATTGATCAGAAA
CAACAAGATTTGATATGACTACATACCCCTAGAGATTTCTCCAAAGCCTC
AAAGTTGGAAAATTGACAAATCAAAAAGTGGGCCACATAACCAGACCAAT
ACTTATTTATAAGCTGCTTTCTTTTTCAGTTAATGGTATTGATGGTGATA
ATCTCAAGGAGATCATCACTTGTAAGGAACATCAATTCCGAATGCTTGAG
ATGGCTGGCATAAGCCTAAAGGAAATTTTGGCATTCAGAAAAGCATTTAA
AAGTCATCAACCTCAGTCCACCAATGAATCAAACCCATCTACACCAGATT
TGCAAACAATGgaagatttttttaataaaaaccagTGAGTCAATTTTCCT
TATGTAGGTACATTTATAAAAGTGCCTTACCTATGCTAAAGgaataattt
tttgttgttaTTTAAAGAATTTACAAATACATAAAAACAGCTATCAAAAA
CCTAAACGTTCTACCATATAAAAATATGTTAATGGGTTTACTACAGTTTA
ATGTGAATTTAGACTTTTTGCAGAGTATTCAAGTTTGACCTGGTAATAAG
GAGAACAATACTTTTGTGTTTATTTGATTTGCGaattactttaaattttc
agacgTTCCGTCATATGTAGCGAATCAAAACGGTACTGGCCAAAAGGACC
TCTACCAACATTCACCACACCTGAAGACGGGGTGAGTTGAACAAGTTAGC
TGAAGAGCTCAAACTGAATCCTAATGTTGGccctttaaaagtttctgaga
tAAAAAGCTAACTTTTGTCACACATGATATCGAAAAGACGAAAACTGCGA
ACCAAAAAAAACGAAGAGGTATTTTCATTACTTTTAACTTATTGTTTTTA
ATGATACAGTTCacaaagaaattgaagaagCTTTTACTTGGGTCACGCAA
GGCGCATTGTAAACAGCTAGACCTGAGCAGGCCTGAGTtatatttttcac
ttaaaacctataaattgaaactttatttttgtCTCTGACCAAATattatt
agaaaaataatttttttcaaagttttcactAATTTTCTGTATTCCTTTTT
CAAGAGCACCCCTGGTACAAATTCAAGTCCACCAAATTCATCCATTCTCA
TCACAGCAAAGATAAAGGCAATGAGACGTAAACGATGATGAAAATGCTCA
GGTACTCCATTGAGTTGGATCGAGTTATGTattactaaagtctgttcaaa
aaaaattggcagttCGCACATTTTCATTCATTGCTCTCGAAAGAGACAag
atatattgaaaaataatacctCCTTGGAAAGATAATTCTGAGCGGAATAT
TTTGAggctttaaaatcttttaaaaactttgaaaatgaagatgaaaaatt
aagaagaaaaaaataaacattttatctACATGAACCGTAAATcatgtgcc
caagttcaggaattgccataaagccattatggtaataaccgggagggcac
attgctatacaatGTATCTACATGaataaaaatctttaatttacgttttt
ctaaaacttcgcagatttcaaatatgtattcAGAAGTTTTATATCTGTCT
AATACCGAAAGTTCCACTTTGGAGGGCAGGAATTTTTGACCCAAGAcagc
ggcggatctgagggggttcaaatggttcagct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051044-exon-scaffold_193-1491911889:85734..85850 | TCONS_00051044-exon-scaffold_193-1491911889:85734..85850 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1510915933:85734..85850 | TCONS_00051044-exon-scaffold_193-1510915933:85734..85850 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1575043694:85734..85850 | TCONS_00051044-exon-scaffold_193-1575043694:85734..85850 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1491911889:89613..89817 | TCONS_00051044-exon-scaffold_193-1491911889:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1510915933:89613..89817 | TCONS_00051044-exon-scaffold_193-1510915933:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1575043694:89613..89817 | TCONS_00051044-exon-scaffold_193-1575043694:89613..89817 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1491911889:90086..90301 | TCONS_00051044-exon-scaffold_193-1491911889:90086..90301 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1510915933:90086..90301 | TCONS_00051044-exon-scaffold_193-1510915933:90086..90301 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1575043694:90086..90301 | TCONS_00051044-exon-scaffold_193-1575043694:90086..90301 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1491911889:90538..91115 | TCONS_00051044-exon-scaffold_193-1491911889:90538..91115 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1510915933:90538..91115 | TCONS_00051044-exon-scaffold_193-1510915933:90538..91115 | Clytia hemisphaerica | exon |
| TCONS_00051044-exon-scaffold_193-1575043694:90538..91115 | TCONS_00051044-exon-scaffold_193-1575043694:90538..91115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:85734..91115 + |
Blast
The following BLAST results are available for this feature:
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