TCONS_00051047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051047
Unique NameTCONS_00051047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051047 ID=TCONS_00051047|Name=TCONS_00051047|organism=Clytia hemisphaerica|type=transcript|length=639bp
CTTCGGACTTCAACAGACGATATCAAAAATGCATGTGCAAAAATTTCTGC
AATTTGTGGAATACCAGCCGAAAAGTCTAGGAAAGTCATCCAAATTGTAG
CAAAAGAACTGTATCATCACGACCTTTACCTATAACCTGAAGAACAACTC
TTTGGTGAGGATGGAACTGTGACTGAAGATAGTTCTAACAAAAAACAAAT
ACCTGTTACAGCTGctgatttgaaaaattacatTTACGTTATACCATCTG
AACAATCACTGATTATAAGCAAGTTCAAGCAAGTGGAATGGAACTAGAAG
CTGCAACTGCTCTCTTTAATAAAGGAGCTGTTAAATCTACAGTTCATTAT
GATACAACTAGCAGAAGTTCCATAGATGGTGACTGGCCAAGCATTATATT
GAAATTGTCAGATGGTAGCGAATACAGGCTAAGGCCACTCTTTTTTGCAT
TTGAGGACCGTGAACAGATTACTGAATTGTTTTTGGAAACATTTAGAAGA
TTGGCTGCTGCTATTAGTGTATACAAACAAAAGGAAATCCAAGCAAAGGA
GTTGTGGGAAAAAGTGGATGCCCTCATGACAGATAGTGTATCAAAGAACT
TAGGGATCGAAGATACAATTCCTGAAGCACTTGGCTCGA
Run BLAST on NCBI

protein sequence of TCONS_00051047-protein

>TCONS_00051047-protein ID=TCONS_00051047-protein|Name=TCONS_00051047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MELEAATALFNKGAVKSTVHYDTTSRSSIDGDWPSIILKLSDGSEYRLRP
LFFAFEDREQITELFLETFRRLAAAISVYKQKEIQAKELWEKVDALMTDS
VSKNLGIEDTIPEALGS
Run BLAST on NCBI

transcript from alignment at scaffold_193:159974..160766+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051047 ID=TCONS_00051047|Name=TCONS_00051047|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at scaffold_193:159974..160766+ (Clytia hemisphaerica)
CTTCGGACTTCAACAGACGATATCAAAAATGCATGTGCAAAAATTTCTGC
AATTTGTGGAATACCAGCCGAAAAGTCTAGGAAAGTCATCCAAATTGTAG
CAAAAGAACTGTATCATCACGACCTTTACCTATAACCTGAAGAACAACTC
TTTGGTGAGGATGGAACTGTGACTGAAGATAGTTCTAACAAAAAACAAAT
ACCTGTTACAGCTGctgatttgaaaaattacatTTACGTTATACCATCTG
AACAATCACTGATTATAAGCAAGTTCAAGCAAGTGGAATGGAACTAGAAG
CTGCAACTGCTCTCTTTAATAAAGGTATTACTTTGCTATTACTCATAAAT
TTGTTGATGCagctcataattttttttaattgcagGATATAGTACATGCA
CATTGTAGCAAACTTTTCCTCTGTTCTGAAAATAGCAATTTTTGATTGTC
GCAACTATGAAACTTCTTCATTTTACAGGAGCTGTTAAATCTACAGTTCA
TTATGATACAACTAGCAGAAGTTCCATAGATGGTGACTGGCCAAGCATTA
TATTGAAATTGTCAGATGGTAGCGAATACAGGCTAAGGCCACTCTTTTTT
GCATTTGAGGACCGTGAACAGATTACTGAATTGTTTTTGGAAACATTTAG
AAGATTGGCTGCTGCTATTAGTGTATACAAACAAAAGGAAATCCAAGCAA
AGGAGTTGTGGGAAAAAGTGGATGCCCTCATGACAGATAGTGTATCAAAG
AACTTAGGGATCGAAGATACAATTCCTGAAGCACTTGGCTCGA

Coding sequence (CDS) from alignment at scaffold_193:159974..160766+

>TCONS_00051047 ID=TCONS_00051047|Name=TCONS_00051047|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_193:159974..160766+ (Clytia hemisphaerica)
ATGGAACTAGAAGCTGCAACTGCTCTCTTTAATAAAGGAGCTGTTAAATC
TACAGTTCATTATGATACAACTAGCAGAAGTTCCATAGATGGTGACTGGC
CAAGCATTATATTGAAATTGTCAGATGGTAGCGAATACAGGCTAAGGCCA
CTCTTTTTTGCATTTGAGGACCGTGAACAGATTACTGAATTGTTTTTGGA
AACATTTAGAAGATTGGCTGCTGCTATTAGTGTATACAAACAAAAGGAAA
TCCAAGCAAAGGAGTTGTGGGAAAAAGTGGATGCCCTCATGACAGATAGT
GTATCAAAGAACTTAGGGATCGAAGATACAATTCCTGAAGCACTTGGCTC
GATGGAACTAGAAGCTGCAACTGCTCTCTTTAATAAAGGAGCTGTTAAAT
CTACAGTTCATTATGATACAACTAGCAGAAGTTCCATAGATGGTGACTGG
CCAAGCATTATATTGAAATTGTCAGATGGTAGCGAATACAGGCTAAGGCC
ACTCTTTTTTGCATTTGAGGACCGTGAACAGATTACTGAATTGTTTTTGG
AAACATTTAGAAGATTGGCTGCTGCTATTAGTGTATACAAACAAAAGGAA
ATCCAAGCAAAGGAGTTGTGGGAAAAAGTGGATGCCCTCATGACAGATAG
TGTATCAAAGAACTTAGGGATCGAAGATACAATTCCTGAAGCACTTGGCT
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032356XLOC_032356Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051047-proteinTCONS_00051047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051047-exon-scaffold_193-1491911889:159974..160297TCONS_00051047-exon-scaffold_193-1491911889:159974..160297Clytia hemisphaericaexon
TCONS_00051047-exon-scaffold_193-1510915933:159974..160297TCONS_00051047-exon-scaffold_193-1510915933:159974..160297Clytia hemisphaericaexon
TCONS_00051047-exon-scaffold_193-1575043694:159974..160297TCONS_00051047-exon-scaffold_193-1575043694:159974..160297Clytia hemisphaericaexon
TCONS_00051047-exon-scaffold_193-1491911889:160452..160766TCONS_00051047-exon-scaffold_193-1491911889:160452..160766Clytia hemisphaericaexon
TCONS_00051047-exon-scaffold_193-1510915933:160452..160766TCONS_00051047-exon-scaffold_193-1510915933:160452..160766Clytia hemisphaericaexon
TCONS_00051047-exon-scaffold_193-1575043694:160452..160766TCONS_00051047-exon-scaffold_193-1575043694:160452..160766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:159974..160766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0825064	0	0	0.18279	0.111264	0	0	0	0	0.25836	0	0.219795	0.21949	0.170957	0.14055	0.0502771	0.247749	0	0	0	0	0	0	0.0860053	0.0885834	0.158117	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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