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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051049 ID=TCONS_00051049|Name=TCONS_00051049|organism=Clytia hemisphaerica|type=transcript|length=1674bp
ATAATGTCTATCAGATATCCATGTTCTGTATAAACTAAAAAGTAGCactt
ttaaactaaaaaggAGCAATTTTTTCAAACCAGTTATACCCATTTGTAGC
TGGCACTGGGAATAATAACCATGAGTGTCTTTCAATTTAGAATCTTTAAT
GTAAGGCAACTTTGTTTTTTCATCGGTTGGCGATTAATGACTTATGGATG
AAGGACATTTTATCTCCAAACAAAAATCTTCGTGGCATGAACAGGAAATT
ATACCAACAGGGCTAGCACCAACAAATGGATTATCCACATTCAATTGTAG
CAACTGATGCTGCACTGACATTtgccttcaaattttcaaaaaaagacctT
TTTTGACTGCGACATCATCAACATATCATCCACACTGATAAGTGGGTTTT
CAATGACAGGTTTTTTCAATGCTTTGATTTTGCGACCACACTAAACTCTT
ACCcagtcttttttcaaaaatacgcGCCGTTTTTCCGAATTGGTGTATTA
CTCTTTTTCAAGCTTAAGAATCTAAACTCAATTTTCGAAATCGCTTAATC
TCtcctttaaaatttaaaaaggaccataaaaatcattcaaaattcaTTCT
GGCCGCTTTAAAAAGAATGTATACCTTTTTGATTCACATCATGATCGAGG
GCACCTAACATGGATGTGGTTGAAATAGGGCTCTTTCTCCCACGTACGCC
ATATGAAACCAATGCTCCTGGCTCACCAAAGTCAACTTTTGCCTTATCAC
AAGAGATGAAAATGCATTTCTCCCTGTTCTCGATGGACATCTCTCTTAGG
TATCGGTAAAGAGCGGAGCACCAATGTGCATCTGTGTGGAAGGCATGTAA
CTGTCTTCTTTGAATAGCGTGTTTGAGTTTGATGCGCCAAGTGTAATACT
GAGAAGTTTTCTTGAGGATGTTAGTTGGGGCAAAAGCGTGTATTACTGTT
GTTTGGGAGGGAATTTTTCTACACGCTTTTTCACCTGTTCAATCAAGTGA
TGGATACTTAAGAACTCGCTCATGTGAACAACTCCATGTCTCCGGTCATC
AGCAGCTGTGACTTCATCCACCATTTTCTCCAATTCTGcaaaaaagatat
caaaagtgTCCCCTGGTCTTCCTTTGCTCAGATGACGGAGATCAAGTAAC
AGGTCGGGATCTTCAGTTTCAATGGCTAACTGTACACGCTCGTCAATTTC
CTGGGATATTGGTTCTGAACTTAGATCCCCAGTCAATGTCTTGTAGATAT
GTCTTATGACATGTGCAGGAGTTTTTGAACTAATGAGCTTGACTTCTTCA
TGAAACTGTTTACGCATTGCTCGAGTATGGTAGATAGGGATTTCAGGTTC
TACAGCTTTCAGCATTTTTGTAACAGTGTCCATTCTTTCGTTTTCATTAG
CCAGTGGGGCAACTTTTTGTATGAATAGTAAAGTGCTGGATCCACCACAC
CACCAGGATCGTCTTAAAGAAATGCATGGAACTTCTAACGCGATTTCCTT
TAGTCGTTTTAATTGGCGAGATCGTGGAATGGTTTCATCAAAATGTTCCT
CTGACAATAGAAAAGGTTCGTTTTTATTTGATTCCGACACTTTGCTTGAT
AgaatttccaaatctttgttgacATGGTCTCGTGGGACGGGAGACCAGTA
TTGAAAGTTAGCACATTTTCAAAT Run BLAST on NCBI transcript from alignment at scaffold_193:177324..179467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051049 ID=TCONS_00051049|Name=TCONS_00051049|organism=Clytia hemisphaerica|type=transcript|length=2144bp|location=Sequence derived from alignment at scaffold_193:177324..179467+ (Clytia hemisphaerica)
ATAATGTCTATCAGATATCCATGTTCTGTATAAACTAAAAAGTAGCactt
ttaaactaaaaaggAGCAATTTTTTCAAACCAGTTATACCCATTTGTAGC
TGGCACTGGGAATAATAACCATGAGTGTCTTTCAATTTAGAATCTTTAAT
GTAAGGCAACTTTGTTTTTTCATCGGTTGGCGATTAATGACTTATGGATG
AAGGACATTTTATCTCCAAACAAAAATCTTCGTGGCATGAACAGGAAATT
ATACCAACAGGGCTAGCACCAACAAATGGATTATCCACATTCAATTGTAG
CAACTGATGCTGCACTGACATTtgccttcaaattttcaaaaaaagacctT
TTTTGACTGCGACATCATCAACATATCATCCACACTGATAAGTGGGTTTT
CAATGACAGGTTTTTTCAATGCTTTGATTTTGCGACCACACTAAACTCTT
ACCcagtcttttttcaaaaatacgcGCCGTTTTTCCGAATTGGTGTATTA
CTCTTTTTCAAGCTTAAGAATCTAAACTCAATTTTCGAAATCGCTTAATC
TCtcctttaaaatttaaaaaggaccataaaaatcattcaaaattcaTTCT
GGCCGCTTTAAAAAGAATGTATACCTTTTTGATTCACATCATGATCGAGG
GCACCTAACATGGATGTGGTTGAAATAGGGCTCTTTCTCCCACGTACGCC
ATATGAAACCAATGCTCCTGGCTCACCAAAGTCAACTTTTGCCTTATCAC
AAGAGATGAAAATGCATTTCTCCCTGTTCTCGATGGACATCTCTCTTAGG
TATCGGTAAAGAGCGGAGCACCAATGTGCATCTGTGTGGAAGGCATGTAA
CTGTCTTCTTTGAATAGCGTGTTTGAGTTTGATGCGCCAAGTGTAATACT
GAGAAGTTTTCTTGAGGATGTTAGTTGGGGCAAAAGCGTGTATTACTGTT
GTTTGGGAGGGAATTTTTCTACACGCTTTTTCACCTGTTCAATCAAGTGA
TGGATACTTAAGAACTCGCTCATGTGAACAACTCCATGTCTCCGGTCATC
AGCAGCTGTGACTTCATCCACCATTTTCTCCAATTCTGcaaaaaagatat
caaaagtgTCCCCTGGTCTTCCTTTGCTCAGATGACGGAGATCAAGTAAC
AGGTCGGGATCTTCAGTTTCAATGGCTAACTGTACACGCTCGTCAATTTC
CTGGGATATTGGTTCTGAACTTAGATCCCCAGTCAATGTCTTGTAGATAT
GTCTTATGACATGTGCAGGAGTTTTTGAACTAATGAGCTTGACTTCTTCA
TGAAACTGTTTACGCATTGCTCGAGTATGGTAGATAGGGATTTCAGGTTC
TACAGCTTTCAGCATTTTTGTAACAGTGTCCATTCTTTCGTTTTCATTAG
CCAGTGGGGCAACTTTTTGTATGAATAGTAAAGTGCTGGATCCACCACAC
CACCAGGATCGTATATATAAAGAAATTcaatattgaaacattttgaatgt
taaaaaaaaataatcaaagccAAGAACAAGAACAAGCTTAACTTGCTAAA
CCCTGTCTCGTTGAAATCCCACTTTCTGagaagttttttcttttgatacg
GTTGATGATACAGGGCTGTAAAATACTTATGTTGATAAAATAGGTAAAAC
GTTTTGAAACGTCAAGCAATAGtgtaaacaaaaagaagagAATAAGATTA
AATTGATCTTtataacaaagaaaaatatcaactcAATAAAAACACCAGTT
CACTCGCAACTCAGTTTGCAAAAAGCTTTTCTACAGTTAAAAACATAGAA
ATCTAATTTCCTTACTTTTTGCCCTCTACTTACCTTTAGCAAaggatttt
gaagaaaaaaaaaggtaCATACGAGAgcaataaaatcaacaaaacgtTAC
AAAATAATGAATACTTTTTAACCTTTCCTTACCTTAAAGAAATGCATGGA
ACTTCTAACGCGATTTCCTTTAGTCGTTTTAATTGGCGAGATCGTGGAAT
GGTTTCATCAAAATGTTCCTCTGACAATAGAAAAGGTTCGTTTTTATTTG
ATTCCGACACTTTGCTTGATAgaatttccaaatctttgttgacATGGTCT
CGTGGGACGGGAGACCAGTATTGAAAGTTAGCACATTTTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051049-exon-scaffold_193-1491911889:177324..178785 | TCONS_00051049-exon-scaffold_193-1491911889:177324..178785 | Clytia hemisphaerica | exon |
| TCONS_00051049-exon-scaffold_193-1510915933:177324..178785 | TCONS_00051049-exon-scaffold_193-1510915933:177324..178785 | Clytia hemisphaerica | exon |
| TCONS_00051049-exon-scaffold_193-1575043694:177324..178785 | TCONS_00051049-exon-scaffold_193-1575043694:177324..178785 | Clytia hemisphaerica | exon |
| TCONS_00051049-exon-scaffold_193-1491911889:179256..179467 | TCONS_00051049-exon-scaffold_193-1491911889:179256..179467 | Clytia hemisphaerica | exon |
| TCONS_00051049-exon-scaffold_193-1510915933:179256..179467 | TCONS_00051049-exon-scaffold_193-1510915933:179256..179467 | Clytia hemisphaerica | exon |
| TCONS_00051049-exon-scaffold_193-1575043694:179256..179467 | TCONS_00051049-exon-scaffold_193-1575043694:179256..179467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:177324..179467 + |
Blast
The following BLAST results are available for this feature:
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