TCONS_00051051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051051
Unique NameTCONS_00051051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051051 ID=TCONS_00051051|Name=TCONS_00051051|organism=Clytia hemisphaerica|type=transcript|length=1395bp
TAAGAATTGAGAGAAGAATGTGAGAATTTTGAAGAGATGAAATTGATGTG
GGGTGAAACATGAGCAAAGTAGTAGACTACCACAACAACCGTCATGAGGG
ATTTGATGCACAAACTTGAAAAGaAAAGGGGGAATGTAGAAATCAcgttt
gatgacatcatcaacGACGAAGCATTAAATGAGATTGAAAGTGAAGATGC
tgatttaaaagatttctttcagAAGATCGAGATTATCAAGGAAGACATTG
GCATTATTAAGATAAACATTACGAACGTTGATAAACAACAGAATGTTATT
TTGACATCAACCACCATTACCACTGAACAAGAAACAAGAGAACTATTGGA
TCAAACGATGGCTGATATCTCCAAACGATCACAAAGAACTAAACGTCTAC
TGAAAGAAATCAAGGAAGGGGTAGAAGAAGACCAAGAAAACGGAGACAAT
TCTTCACATTGCAGAATGAAAAGGTGCCAGTTTAATGCACTTTCATTGGA
GTTTATGGACAATATGACGAGATACAATGCCATCCAGGAACTTTTTcgag
caaaatcaaaaagtcgTATCAAGCGTCAGCTAAATATTACGAAAAAGACA
GAGGTCAGTGATGAAGAGCTCGAAGAAATGCTGGAAAATAAAGAACCCAT
CAACATTTTTACACAAGGCTCACAGATACAGATGATGCAAAACGAAGACT
GAAAGAAGTTGAAGATCGGCATAATGATATCATTAAACTAGAAAAGAGTG
TACAGGAATTGCACTcactttttaaagatatttcaattcttatCGATAAG
CAGGGTGATTTGATAGATCATATCGAGACGAATGTAGAAAATGCAACAGA
ATATATTGCGAGTGCCATACCGAAGATTCATGCTGCTGTTCGAtataaaa
acaaagcaaacaggAAAAAGATTATGTTGTTTGGAGTTGTTGGAAGCATC
ATACTAATTATAATCCTTGTTGTTGTTATGAAATATGCACGATAGCGAAG
ATATCAATGAGGTATACTAGAATGAATCTCCTTGGTaatggtaggatttg
aagcctaccaaatcctaccaaagttgcgcggcctagcgCAGTCCGActgt
ttttacacaaatgacagattcaaactaaaatttacacctAAATGTCGAAA
AAtacactcgaaaacaaaggagtcgctagattcaatctgtcgtcaaaaat
acggcgcatattttaacgcttcactttttcttgcctgagaaaagtTAAAG
ATACGATTATAGACCTTCGGTTTTAAACTTCATTGGAAGATACATGTTtg
tttttaagggctctgaccatagtgaatttttcataattgccgtgtttaaa
atgtgttttctgactgatgtaaccaacaaaactatggcatgttat
Run BLAST on NCBI

transcript from alignment at scaffold_193:211297..226621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051051 ID=TCONS_00051051|Name=TCONS_00051051|organism=Clytia hemisphaerica|type=transcript|length=15325bp|location=Sequence derived from alignment at scaffold_193:211297..226621+ (Clytia hemisphaerica)
TAAGAATTGAGAGAAGAATGTGAGAATTTTGAAGGTATTTCTATCCGTTT
TCGCATCCGTTTATATTTATTCGAAAGTCTAGCTTAAGAATCAAGAAGGA
AATTTAGCCAATGTTATACCTTTAGGAGGCTTATTGTGTACAGTTGTATA
TTACATTTTGGACGATTTttgtacagtggagtctccataactcgaatccG
CACGgggaacaaaaatttgttcaagttaaggaaatTGCGAGTTATGAAGT
AAGGTTTATAATGTATTGCTAACTAAAGgcacgagaaaacttgttcgagt
ttagGAGacttcgagttatagagtttcgagttaaagagactctactgtaa
taTGATTTAggagccaatcagattgctcacatttttcatgttgacgataa
gggagtggtcataaagtatctactagaggggTGGGGGGATGGaggatttt
tccaaaaatcggaaagaAATTTCGCACCCCCCTTTACCAAGCCAAATTTT
CGCACCACCCCCCCtaagaaaaatcttaaatacCCCCGCCTCGTGCAACC
TTGCCTTGTTCATAAGTTAGATCAAAGTTGCTTAAATGTGAAATTGGATT
TCAAACATCGCTTCTTGAACTTTACAATCTCATTTATATCCTTTAATTTT
TATGTTCCTTTTGGGAAATTTCATCGTTGTGAGTGTTATAGCTGAGGCGC
AACCGGTTTGCGTCGACAGAGAACATTTAAAACTTTTAACTCTCTCATTT
AGCTAAACCCTGAAAATTTATGGTCTTAAAAAGCCTATTTAAAAAATTAG
GTGACCCTAAGTGCTTCCTGTTAGCGCTTAAGTTATTGAAAATAAGACTA
AAATTTCAAGctatatttcttaaaaattgagatttttacaGCATGTAAAA
GCAAATAATAGATTATGATTGGTGTAGAGTTTTAAAACTTNTTTTGCAGC
ATGTAAAAGCAAATAATAGATTATGATTGGTGTAgagttttaaaactttc
aaaaaaggcTCTGATAAATGGTTAAAAAAGGCTTCATTTTTAAATCAACC
TGGTGAgatgtcaaaaaaaattccaacggtatatgatatgaaATGTTTTG
ACgcacaagtaaaaaaaatatttcagacaaGAAGTCTGGTCTGCAAAATA
ATTCAGCGGCCTataactcggacccagtccattttcAGACATATGTTGTG
ATGTTTTGGAAACAAACAGGTGTTCTGGAAgtgggtctgagatttaaaaC
GTTTCTTACCGACGGTAAGTACCACTGTACCAAAATTTATGTTTCTAACT
CAAAAATGCACACTTGCACCCATTATTTTGTTCACACTTTCCCANATTTA
TGATTCTAACTCAAAAATGCACACTTGCACCCATTATTATGTTCAGACTT
TCCCGGGACTATATGGCCTATTTTTGACTGTCATAAAATTTTCAGGTtag
caacaaaaaaacatcATCAAGGACTCCCATTTTACATTTCCTTGTTCGGA
AGAAAAATTTTCCCgttacatgaaaaatatgaggaaaaataattttgttg
aattttggaTCCTTTAGAGATGAAATTGATGTGGGGTGAAACATGAGCAA
AGTAGTAGACTACCACAACAACCGTCATGAGGGATTTGATGCACAAACTT
GAAAAGGTAACAATAATCTAActatagaccttatcggagtttttgatttt
tctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaaaagaa
atctcttaggaattcatcgagggaattctattgtaatatagtcgaaacaa
tcccacaatgcatcacttgtttagaaaaataaaaaactccgataaggtct
attaaatTCAAATAATAGATCTCACTATCTATGAAAGAGGTTCTTTGCTT
CGTTTATTCTAGGTATTATAAAAGAAATTCTGTGCACCGACAAAACGTTT
CTTCAATTTAGATTAAATGATCAGTTAACTCGGATGTCTTGATAGGTGtt
tcccactggaaaagttTGGCCTAAATATCGTCCACAGTAGAGCATTATAC
TCCgatttttgtctccactgaaaataatcaaataaacaaaaccTCGCTGC
AAAATTTAATGCTTTTTTGGGATGGGTCCCTATGAATTTTTGAGAAGAAA
GTTACCTGAATTTCCggccatgaaaaatatgaaaatatcaatctccatcg
agtttcagtcctttatttttacccccccccctcccacTGACTAAAAAATC
CTActtggtctgtgagaagggggtgtgtataataaaaataaaaggtcTTA
CTGTTGACCGATTTATGATAAGTTTttggttttttcaaaatagatctAAT
GCAAATGCAATTCAAAATGTTATTGCTCAGTATTTAACAATTTTGGGTAC
AGTACCTAATAAGCGTCCTCACCCATGCGTCCAAAATCATTTTCCACTCT
TAACTTTCTTATTCAACTAATAAGACATTTTcgcgagggggggggggttg
gcaAAAGAATTATTGGCCAAAGGCTAACGTTATATTCAACTTTCGAAAGA
AATTCATGTGGGTTGCGTGCTAGAAAAGTTGTCATGTATCCTAAGGTTTG
GTCCCCTACTATAATCACCCCTATTAGTTTGCAAACGACAATTACTTCTG
ATTCTTTGGCACTAGACTCATAgcgtttaaaattttcacataGGATAGGA
TTAttgtttcaaagaattttaagttttgagtttttttatctaGCTTGTAT
ATTCATTAGGTACCCGagggtacacatttttttttggttttcagaAAAGG
GGGAATGTAGAAATCAcgtttgatgacatcatcaacGACGAAGCATTAAA
TGAGATTGAAAGTGAAGATGCtgatttaaaagatttctttcagAAGGTAA
TCTAaatattagcctggatatcacCCAGTTGTAAACATAGATTTGTAAAG
CCCGAACGAAGGGCTAGATATAAAGCTTTTGCTGAAaggtgtgccgtggt
taggcaggaaatcctacctaagtcacgtgacattacaataaaatttcagc
gATTGACCAATGAGAAGCTTCGCGGGcctttcgaaaacaatagcaacaat
attttttccgatattcactttttttttgcctgctaTGGCTTAAAacccga
catctagccctttagGCTTTACAAATCTATGGTTGTAAACTGCTTTCTTA
TAGGTTTTGGTTTAagttgatatcgtttgcttacttcatcaatttcaagc
aatttgacattgaaatgacatgaatgtggagcaatattggttagaaaaaa
ggaaagaagaacAATTTTTGGTTTATTTTAGCACAGAAGGAGGCATCGGC
CTGATAtaaaactaaaacctttaattttgatattttttgagtcgacaaat
GTTCAGTTCGAGACTATCACAacataaaattttccaaatatggGTTCTTA
AGCAGTTCATACGTTGAAATTCTCATTGCTTTTtctaataaaagtcaaaa
gcTAAATGGAGGGAAGAGACTTACTGTTTTCCTTTCGTGTAACCACCAGA
TCGAGATTATCAAGGAAGACATTGGCATTATTAAGATAAACATTACGAAC
GTTGATAAACAACAGAATGTTATTTTGACATCAACCACCATTACCACTGA
ACAAGAAACAAGAGAACTATTGGATCAAACGATGGCTGATATCTCCAAAC
GATCACAAAGAACTAAACGTCTACTGAAAGGTAAAAAATGGATTGATTTc
acattgttttttttaagaaacacacttttaagaaacatgaggctcagaat
gcctaaaaactaagaaacatctaagaaacatgctgaggctgagaatgaga
aaacaacattttttaattcggttttttaaagaactttccaatccagcctt
ccatgaggctgattatgtcaaaaagtttagaaacatgtaagaaacatttc
aggctcaaaatgccgatttcttaagaaacattgaggctgcttggtaaaac
taatttcttaaagaaaaaacgtgttttgcttttaagcattttattaagtt
ttgagagaAACTATTACCTAAACACCATATGGTCCATGGTCCCCATCTCA
ATTCCTCAATATTTCTCGCCCGTTCGTCACTTTTCTCTATCATTCCTCAG
TGTTCCAAACTCATTCCTCAGTGTTTCTAACTCATTCATCTGTGTTCCCA
GCTCATTCCTCTGTGTTCCTAACTCATTCCTCTGTGTTTCTAACTCATTC
CCCAGTGTTCCTAACCCATTCATCAGTGTTCCAAACTCATTCCTCTGTGT
TTCTAACCCATTCCTTTGTCTTTCTAACTCATTCCTCAGTGTTCCTAACC
CATTCCCCAGTGTTCCTAACTCATTCCCCAGTGTTCCTAACTCATTCCTA
AGTGTTCCTAACTCATTCATCAGTGTTCCTAGCCCATCCCTCATTGTTCC
TAACCCATTCCCCAGTGTTCCTAACTCATCCCCCAGTGTTCCTAACTCAT
TCCTCAGTGCTCCTAATCCATTCCCCAGTGTTCCAAACTCATTCCTCAGT
GTTTCTAACTCATTCATTTGTGTTCCCAACTCATTCCTCTGTGTTCCTAA
CTCATTCCTCTGTGTTTCTAACTCATTCCCCAGTGTTTCTAACCCATTCA
TCTGTGTTTCTAACTCATTCCTCTGTGTTTCTAACTCATTCCTCAGTGTT
CCTAACCCATTCCCCAGTGTTTCTAACTCATTCCTAAGTGTTCCTAACTC
ATTCCTCAGTGTTTCTAACTCATTCATCAGTGTTCCTAGCCCATCCCTCA
TTGTTCCTAACCCATTCCCCAGTGTTCCTAACTCATTCCCCAGTGCTCCT
AACTCATTCCTCAGTGTTCCTAATCCATTCACCAGTGTTCCTAACTCATT
CCTATATGTTCATAACTCATCCCTCTGTGTTTCTCAATCATTCCTCATTG
TTCCTAACTCATTCCTCTGTGTTTCTAACTAATTCTTCAGTGTTTCTAGC
CCATTCCCCAGTGTTCCTAACTCATTCCTATGTGTTCCTAACTCATTCCT
CTGTGTTCCTAACTCATTCTTCAGTATTCCAAACTCAATTCTCAGTGTTC
CTAACTCATTCCTCAGTGTTCCTAACCCATTCCCCAGTGTTCCTAACTCA
TTCCTCTGTGTTCCTAACTCATTCTTCAGTATTCCAAACTCAATTCTCAG
TGTTCCTAACTCATTCCTCAGTGTTCCTAAGTCATCAGAGCTGCTTATTC
ATTCCATTTTAAACGTCCTTTTACTATTCCTCAAGAATGGACATAAATTC
TTCTAAAAGCGCCCAAAACCGGTTCCTCGGGAATGAGCTATATTTAGTGA
TTATAGTTAACCCTTAGTTAACTAATCTAAACATattcaaaataaacatt
ttttaaccttgtTCTAAGTTATTAGTGTTATTAGTGTTAATTATAATACT
CATCTTATTTCATTTCCAAAGAAATCAAGGAAGGGGTAGAAGAAGACCAA
GAAAACGGAGACAATTCTTCACATTGCAGAATGAAAAGGTGCCAGGTAAA
AGAAAATacatatacacgcttttttttataagaatatcttctaccTTAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNccttctagatcaggagatataagcccttaa
agtttgaactagcgatttttaaaaaaaaacttagaaaaaaggaccctggc
actcaaagggttaagggaactattttttgcgggaactaatttttgcggtt
cgcagttcaagatttaatatttaatatttgcgggaacttaaagggataat
cagatggtttgagatattttgcctatagatagcttctaggattttaggaa
aaatttctaaattttttggtgtacttattttcctaactaAAGTTATACCA
CTTTGAAATGTTGaacttttgcttgaaaacaatagaaaaaagtgtgaaaa
gaCCCTGAAAAGTCCCATTTTTCGAGATTTCAAATTGGCATAACTTGAGT
TAAGAAAATaaatacaccgaaaaatttagaggtttttcctaaaatcctag
aagctatctgcaggcaaaatatctcagaccatctgattatccctttaatt
tTGTGGATTTCTCACTTGAAAGAGAATTAGAGGCGTGCTGTGAATTAttt
agctgggagacccgtctactctgttcgtgtgatttcggagtatagcattt
agttaaaaggaataaaaatatagaaataacagagtagcccagagtagccg
ggtatttttgtagatgccaaatctggtcgcagaattctattggctgtcaa
acaattgttgaaatcacgtgatattattgttttgattggaagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNttatcaacggcttttttggcacgaaattcaaagcaaatgta
aacaaattcaaactgggtcaaaaataccatactctcaatgagtagcttct
gatgggacttttgcttttatgtggtgtaagtttgaatagggagtatggat
ctccagactatgaattattcgacctttgtttttcgcatttgaaacatttt
gcgggaacttaattttacggtttgggcctaaatccgcaaaaaccgcaaaa
tttagttcccgcaaaaattagtcaCCTTAAggtataagaatatcagggtg
ataattggccaaatcgtaagaataccctaagaataacctctagggtgagt
ttcacagaatttactaagaatacagtcattttgtatttggttaatagaaa
aaaactgcttcctttgttagacttaactttgaggcagaaatgtaatttag
ctcaaaatgttcattcaaaagtctgaaaaagcaagaatacgttaagaata
tttcaccctcaaatttggcaatttcttaagaatacttgaccctcatccaa
agtacactattcttataaaaaaagcgtgtataccaGGATATACCAGACCA
GGGGGGTTCTTGAACAGAAAGGGAGCCGGGGATGTgctgctggtcagggt
acctttctCACCCCAATGAGTTCCAGGGAAGGGTCGAAAAAAACCAacat
agaaaaatcagtccctcgtagagCATCTTTTCGGGAGAATATGGGGaaaa
tttgtataattttgggaaaaaggtgaacaattttgagaaaattttggtat
TCAGTCCCATTAAGGGtaattttttcgcaaatttggttagaattttcaaa
aaccaaGTTCGCGGAACATCCCCGTCCGTCAGCAAAGGTAGCACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACCTTAAggtataagaatatcaggg
tgataattggccaaatcgtaagaataccctaagaataacctctagggtga
gtttcacagaatttactaagaatacagtcattttgtatttggttaataga
aaaaaactgcttcctttgttagacttaactttgaggcagaaatgtaattt
agctcaaaatgttcattcaaaagtctgaaaaagcaagaatacgttaagaa
tatttcaccctcaaatttggcaatttcttaagaatacttgaccctcatcc
aaagtacactattcttataaaaaaagcgtgtataccaGGATATACCAGAC
CAGGGGGGTTCTTGAACAGAAAGGGAGCCGGGGATGTgctgctggtcagg
gtacctttctCACCCCAATGAGTTCCAGGGAAGGGTCGAAAAAACCAaca
tagaaaaatcagtccctcgtagagCATCTTTTCGGGAGAATATGGGGaaa
atttgtataattttgggaaaaaggtgaacaattttgagaaaattttggta
tTCAGTCCCATTAAGGGtaattttttcgcaaatttggttagaattttcaa
aaaccaaGTTCGCGGAACATCCCCGTCCGTCAGCAAAGGTAGCACTTCCG
AGATACCGGACAATTCAGCTCTCTGGATAACCCCGAAAAAGATAGTCCAA
TAATATTGCGTTTTCTACAAGTGGAGCATacccatatacaaaaatttCTT
GACATCCAACCCAGTCTAAATGTGGCATCTGATTTCAACGTAACGactgg
aaatattttttctattcaCTTCAGTTTAATGCACTTTCATTGGAGTTTAT
GGACAATATGACGAGATACAATGCCATCCAGGAACTTTTTcgagcaaaat
caaaaagtcgTATCAAGCGTCAGCTAAATATTAGTGAGTTTTTTTTATCC
TGAAGCTTCATAATTCAATCACTTAGAAATTTCAACATTATGCTGTCAGA
TATACCTCGAAAAGGGTCTTAAAGTTTAAGAAACAGTCCTCGTAGGAAAA
TTGCAATAGGAAAAAATTGCTGCCGAGCTGGAACAAAacatgttgtttca
acgttcatctatgTTCCAGTTGGGCATTTATGGTGGAGAAAAAGAATTAA
CATACCAGATGTCGCCACAATAATTTCTCAAATCGGTATCGATCGCACAT
CTTGACCTTcttacacgttttctttattCTTGTTTTCAGCGAAAAAGACA
GAGGTCAGTGATGAAGAGCTCGAAGAAATGCTGGAAAATAAAGAACCCAT
CAACATTTTTACACAAGGCGTAAGCAACTTTTagcaaaataatattttcc
aaATTAAGTGGAAGTGTACTCGAAAAttagaattgtttttttctaGATGG
GTCATTCCATTAAATTTCTGTTGTTTGAGGGAAGAGGGGGATTTGAGCGA
GCTTTTTCAATTCGAAACATTTCTTGGATACGTGTTggccccccccctga
aaaatggcaaaaattgcaaaaaaaaaccttggaaaattcttttcatacat
gaaagtgacggtggacgaactaaagTCAGTCTTTTACCCTACTGGAAATA
GAATGACCCAATAAAACACCCCTTTTCATTAACAATAATCTTATAAAATA
ATCACATAGAGGCCAATACTTAAAAAACAATCTCAGCCTAATATTTTAGG
AATGGTCAACCCAAGGCCATTTTTCGCCAACAAATGAAGTAACCCAACAT
ACTACCTTCAAGAAGCCTGAAAATTACAATACAAATAAGAATAACCGACC
CCCAGCCAAAGTTTTCACTGatctaaaatataacaaataacatgctgaat
ggacctacctgatgatgagaatcagataaaaataggacaaatagcaagag
agtaagaaagtgtaGTGAGTAGtcccaaaaataaaataaaaacaaataaa
gcaATTTCACACTTAGTccaaaaaccccatttttagagactttttggccc
aagtttgcccaacaaaaaaattcaaaatcgggctccgtcactttttggga
attgccattttgcatcaccgtgcaaaaaatcagaaaaaaactaatgagcc
aatcccgagaaacgaacgaacggacgaacgaacggacggacgaacgaacg
aacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaa
cgaacgaacgaacgaacgaacgaacgaacgaacatcggttaatttacAAT
TCtacccaccggggtaggtccaaaatttACGATTCTAGAGTTCTATTCTC
TTCCATTTAGATAGTCACAGATACAGATGATGCAAAACGAAGACTGAAAG
AAGTTGAAGATCGGCATAATGATATCATTAAACTAGAAAAGAGTGTACAG
GTCGGTATCTAGCTTGTCACTTAAacgaaaaccgtttttttttaatttgg
ttcAGTGGAAAAATACTTGCTAACTAGCCAGCCTCATCTCAAATGAACCC
TATGcttaagaaaaaaatgataatgTAATGTGATTTTTCATCTATATCAT
ACTCTACATATTCAAATGGTTATAAAAGCATGTAATCTGTTATAGATGCT
CCTCAGGAGttttaaaaattaagaaaactcAAGGAAATCTTTGCTCGCGT
GGGAGAAAAAAAgtcgttcttttgttttgaatttgatgGTCCAAAGAAAG
TGTCGAAAGTACTCTCGGGAATATACCTAACAAacagggggtttggaata
agcgggttgggtggaaaaattctcaaaacttaataagcgggttgggtgga
aaaattctcaaaacttaataagcggcgGGGCGGATggaggttggaataaa
aatatcctgggtgggaaattttcgaaaaattaattagcaagGGGAGGCTC
ATTAGGTAGCCGAGAGTATAGGCGCATATCCAGGAATAAATTTAGAATAT
GACAATAAGAGCAAACTTAGAGCTTTTTTCGCTAATTTTAAATAATCTTC
ACTCACCGTGTTATGAATTTTGATCTCATTCTTTTACGAATTTATATCAG
ACGATTTCAGCAATGTCGGTCATCTATCTTCATGTAGAGGAAGTGGAGGA
Agcaaatactttaggcgtacaaactttcacgagcagaaactttcatgaat
ttgaggaaaaaatgtttttcgcgagcatataCTTTCGCAAATcattggat
aaaaatgagaatttccCCGAATTTCCGAATAAAAATTGCCTTAAcagtga
aaaatatttcttaaatccGCTACAGACGGTTGCTCTCCGtctttaaaaag
gcattaaagaATAATAATATGCCGAAAATTGGATATTTACTACGATTTCG
AGGTTTTACCtatagatttccaatttttttgagaatttttctcaagcata
aaatttcgcgaattgccctgttaagaattttcaaagacatttactttcgc
gaaaaagacCAATATTCGCGAAAAtagcgaaagtttctgctcacgaaagt
ttgtacgtctaAAGTATACTCTTATCAATTAACCCAAACATGAATAGGGG
TTGAGTAGTTCTAGCAGGGTGGTATGATGTCAAATTTATGTACATCTGTG
ACCACGAGTACAATTATTTCAAACATTTGACGTCATTCAATCTTGGTAAA
CTTACGCAATCTATAGCTTTGTCCCACATCATATATATGATGGCAACTGG
AAAATCCCTGAAAGAGAAGAAATAGATATTTAGATTGAAATTTTATGCAT
TTCTTATCTTTTTTACAGGAATTGCACTcactttttaaagatatttcaat
tcttatCGATAAGCAGGTAAGCAGTATATTATTACTTAGGCTTCATGACG
ATAATTCGAGTTGTTGCCCATTTCGATGATTCCCTGAGGGGAAGCAATTT
TGACTCGAACACACAAACTGACACTACTAGTCTGCTACCGCAATCGGAGG
CGAACCGAatgtaggggagggcgccacttattctccctggattgctccac
ttaccctcgatccttctcttaattgccgAGTATCAAGCTGAGAGAAACCA
AGTACCATATTTGTACGAATCTTTGGTATGAGCAGGCAGAGGATTGAACC
CATAACCTtgtgcaccgtagccggatgctcttcCACTACACTACGGTTGC
TATTCTATTAATATCCTACCCGTATCAAACTTCTGAGGTACACGCTTTTc
attagcctatactagacgtcacccgcgttttttctacacAATTAatgtct
attcatgatatgcaccactgcaatgtcttctaacattataTCAGGGaacc
aatagctgattggttgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGTTTTT
ATAGAACTGAATTCTgaagttcataaaaaaattacatatacaAACAATAT
GAGGGTCCTCAAGATTATTgcagtcaatcagtcaatcacGGTTAGGTATG
AATTCTCCACCCCTAGTTTTTGAATTCAGGATgtgtattatattattttc
atttgcgTAGTTGTAAaactttgcatacaattcaatccCACTGTGGACTG
AGACAACGAGATTGAGCCTATGGACACTGATCAAATTACAACATGGGATT
TACagttaaatgacatttttttgtaTGGAACTCTTGGAATTCaagattgc
aaaataaatttcaaaacagacaaaataattttttgtatcaACAAGAATTT
CTATTTGGCATTTGGTGGGATTATTTGTAATATATTTGTAGGTATATATG
TATTATCTTTAAAATGtaatttatggaaaatattttatgacttcaaatat
taaaaaaaaaaaatttgaaagaagatcTTTCTCATCACTCTATACTGCCC
TCTTTACACACTTTTCTTGTTATACAAAGTACAGTAATAgataaaactct
caaattttttttgctcttttgctgtttgcttttcattaaatatttatatg
gtttctcttttatttggtctttttattattatacagagaaaaaaaccatt
ttgttTAAATTACTGTACTGAAAATTAATGGTTTTTATGAGAGAAAGCAA
AGGACACACTTTTCATACTAATTCTGACTAAAATTTAATGTAAACCTGAT
AAAAAGGTTCAGTTTTTGCATGGTACCCTCAAAATCCTAGATCCGCCCCT
GATTCCTCAGCTTCTTCTTTGCTAAATCTGTTTATTTTTCCAGTCTTATA
GTCTCAGATTTGCTCAGATCCATAGGCCGCctaactgaaaacgaaagtga
aatctaccattttgaaaaatttatccctaCACGCCAATTCGACCGCGTCC
GCGGAATGTGGCTAATATCATGAATTCCACTTTGCAActgtttcgaatgt
ttttcgttttcgggctctaagttcgattttttgacgtcacttttagcTTT
CGAAGCTCCTGAAGTAGCGAAAAGTTTTCATAGCAGTGTTTGTTTTCGAT
TTCAGGGTGATTTGATAGATCATATCGAGACGAATGTAGAAAATGCAACA
GAATATATTGCGAGTGCCATACCGAAGATTCATGCTGCTGTTCGAtataa
aaacaaagcaaacaggGTACAATGTAGCTGCATGTAGTAATAATTCTATA
TCTGTATTTTGCTACTGATAGATaacaatttgatttattttgtacCTTTT
ACTTCCAAGTTATGTATGTTGATCTTTTAAATACGCATTATAAGCATTTT
ATAAGTATTTTCTCGTTGCCAGCTAAAACATTAAAAgcaaaatattataa
ttttcgACTTAGTTTTGTGGATGACCCCTCAATCTACGAGAAATTTAATC
CCAGTTCATGATATTcacgacgtaatgttttctacggaaagaccccggtt
gtTGCCAGAAGTGGCAAATTtgatacaacttttgtctagtttaaatctGC
CACTANTACTTTTtcattccccccccccctcggttgaagaaaatttcgaa
ttcaaatcatttggttcggacctttatttcaaacatgaaattcaatgttt
attaagaaactttcttatttccttgatgcgtataagaagcgtaaaagtcg
acaaaaaaaacaagcaaaaaagagctatgaaaattttttctctgcgtacg
tacattttcctttgacccctcccctccccctgtacgcaagcatacgcttt
tgagaagacccccctcccccttagtgcgaacgtactatgtggacggcccc
ttaacGTGTAATGCCTTAAAGCCTTAAAGGAACTAACCTTGTGcccattt
tgaaatatttagaaGAAAGAATTTACGAAAATTTCATTTGAGCTCGTCCA
CGGAGTTTTCAGAATTCGCAAGGACTGTATTTTGCTACTGATAGATaaca
atttgatttattttgtacCTTTTACTTCCAAGTTATGTATGTTGATCTTT
TAAATACGCATTATAAGCATTTTATAAGTATTTTCTCGTTGCCAGCTAAA
ACATTAAAAgcaaaatattataattttcgACTTAGTTTTGTGGATGACCC
CTCAATCTACGAGAAATTTAATCCCAGTTCATGATATTcacgacgtaatg
ttttctacggaaagaccccggttgtTGCCAGAAGTGGCAAATTtgataca
acttttgtctagtttaaatctgccactactggctaaaaccggggtatttc
catAGAAAacgttacgtcatgaatataatGAATATAGTAAAAGAAAATGT
ATTTATGTTTTGTTATATCTGGTTATATTTCTCTTTCTTAATAGAAAAAG
ATTATGTTGTTTGGAGTTGTTGGAAGCATCATACTAATTATAATCCTTGT
TGTTGTTATGAAATATGCACGATAGCGAAGATATCAATGAGGTATACTAG
AATGAATCTCCTTGGTaatggtaggatttgaagcctaccaaatcctacca
aagttgcgcggcctagcgCAGTCCGActgtttttacacaaatgacagatt
caaactaaaatttacacctAAATGTCGAAAAAtacactcgaaaacaaagg
agtcgctagattcaatctgtcgtcaaaaatacggcgcatattttaacgct
tcactttttcttgcctgagaaaagtTAAAGATACGATTATAGACCTTCGG
TTTTAAACTTCATTGGAAGATACATGTTtgtttttaagggctctgaccat
agtgaatttttcataattgccgtgtttaaaatgtgttttctgactgatgt
aaccaacaaaactatggcatgttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032359XLOC_032359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051051-exon-scaffold_193-1491911889:211297..211330TCONS_00051051-exon-scaffold_193-1491911889:211297..211330Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:211297..211330TCONS_00051051-exon-scaffold_193-1510915933:211297..211330Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:211297..211330TCONS_00051051-exon-scaffold_193-1575043694:211297..211330Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:212864..212952TCONS_00051051-exon-scaffold_193-1491911889:212864..212952Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:212864..212952TCONS_00051051-exon-scaffold_193-1510915933:212864..212952Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:212864..212952TCONS_00051051-exon-scaffold_193-1575043694:212864..212952Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:214091..214192TCONS_00051051-exon-scaffold_193-1491911889:214091..214192Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:214091..214192TCONS_00051051-exon-scaffold_193-1510915933:214091..214192Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:214091..214192TCONS_00051051-exon-scaffold_193-1575043694:214091..214192Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:214846..215026TCONS_00051051-exon-scaffold_193-1491911889:214846..215026Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:214846..215026TCONS_00051051-exon-scaffold_193-1510915933:214846..215026Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:214846..215026TCONS_00051051-exon-scaffold_193-1575043694:214846..215026Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:216768..216841TCONS_00051051-exon-scaffold_193-1491911889:216768..216841Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:216768..216841TCONS_00051051-exon-scaffold_193-1510915933:216768..216841Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:216768..216841TCONS_00051051-exon-scaffold_193-1575043694:216768..216841Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:219621..219729TCONS_00051051-exon-scaffold_193-1491911889:219621..219729Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:219621..219729TCONS_00051051-exon-scaffold_193-1510915933:219621..219729Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:219621..219729TCONS_00051051-exon-scaffold_193-1575043694:219621..219729Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:220036..220115TCONS_00051051-exon-scaffold_193-1491911889:220036..220115Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:220036..220115TCONS_00051051-exon-scaffold_193-1510915933:220036..220115Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:220036..220115TCONS_00051051-exon-scaffold_193-1575043694:220036..220115Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:221111..221196TCONS_00051051-exon-scaffold_193-1491911889:221111..221196Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:221111..221196TCONS_00051051-exon-scaffold_193-1510915933:221111..221196Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:221111..221196TCONS_00051051-exon-scaffold_193-1575043694:221111..221196Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:222565..222612TCONS_00051051-exon-scaffold_193-1491911889:222565..222612Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:222565..222612TCONS_00051051-exon-scaffold_193-1510915933:222565..222612Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:222565..222612TCONS_00051051-exon-scaffold_193-1575043694:222565..222612Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:224852..224962TCONS_00051051-exon-scaffold_193-1491911889:224852..224962Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:224852..224962TCONS_00051051-exon-scaffold_193-1510915933:224852..224962Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:224852..224962TCONS_00051051-exon-scaffold_193-1575043694:224852..224962Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1491911889:226141..226621TCONS_00051051-exon-scaffold_193-1491911889:226141..226621Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1510915933:226141..226621TCONS_00051051-exon-scaffold_193-1510915933:226141..226621Clytia hemisphaericaexon
TCONS_00051051-exon-scaffold_193-1575043694:226141..226621TCONS_00051051-exon-scaffold_193-1575043694:226141..226621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:211297..226621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.15578	0.119607	0.150832	0	0	0.0807108	0.238156	0	0.208905	0	0	9.43009e-07	0	0	0	0	0.438297	0.651556	0	0	0	0	0.279586	0.00239008	0	0.838658	0.425158	0.190691	0.193508
Blast
[Close]
BLAST of TCONS_00051051 vs. Swiss-Prot (Human)
Match: STX1A (Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-30
Identity = 41/87 (47.13%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  669 LTDTDDAKRRLKEVEDRHNDIIKLEKSVQELHSLFKDISILIDKQGDLIDHIETNVENATEYIASAIPKIHAAVRYKNKANRKKIML 929
            + D+  +K+ L E+E RH++IIKLE S++ELH +F D+++L++ QG++ID IE NVE+A +Y+  A+     AV+Y++KA RKKIM+
Sbjct:  182 IMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI 268

HSP 2 Score: 58.151 bits (139), Expect = 3.410e-30
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  358 MADISKRSQRTKRLLKEIKEGVEEDQENGDNSSHCRMKRCQFNALSLEFMDNMTRYNAIQELFRAKSKSRIKRQLNITKKT 600
            M+DI K + + +  LK I++ +E+++    +S+  R+++ Q + LS +F++ M+ YNA Q  +R + K RI+RQL IT +T
Sbjct:   79 MSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRT 159
The following BLAST results are available for this feature:
BLAST of TCONS_00051051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1A3.410e-3047.13Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1[more]
back to top