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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051058 ID=TCONS_00051058|Name=TCONS_00051058|organism=Clytia hemisphaerica|type=transcript|length=2597bpRun BLAST on NCBI protein sequence of TCONS_00051058-protein >TCONS_00051058-protein ID=TCONS_00051058-protein|Name=TCONS_00051058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp MSQSDQSMSNNTDGSSMVFSNINTKDDMIHINNARKEHHNNTEDCTTLVNRun BLAST on NCBI transcript from alignment at scaffold_193:278670..288712+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051058 ID=TCONS_00051058|Name=TCONS_00051058|organism=Clytia hemisphaerica|type=transcript|length=10043bp|location=Sequence derived from alignment at scaffold_193:278670..288712+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_193:278670..288712+ >TCONS_00051058 ID=TCONS_00051058|Name=TCONS_00051058|organism=Clytia hemisphaerica|type=CDS|length=15363bp|location=Sequence derived from alignment at scaffold_193:278670..288712+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051058 vs. Swiss-Prot (Human)
Match: S22AD (Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 4.501e-41 Identity = 140/545 (25.69%), Postives = 237/545 (43.49%), Query Frame = 3
Query: 564 EFLKNVGQLGRFQALTMLICALLLFVPSMQALVMVFTAHSPPWSC----------DIFGQTQFSDTLNKTTTCNDTKAIFYEGQSG-----------FNKRCGYERTNWVYRLPKSHSIVSEFDLVCDHESLVYLSNSCLFFGQILGGFVVGWLSDRFGRKKPLFTCSTLLCIVSFVSSYSANIYTLMFCRXXXXXXXXXXXXXXXXXXXXXXXXKYRAFAGLMVWNAWTTGICLMSLQSYYIANWRTLMKVITAPYIILNLGFLFVPESIRWYHSKGRIDDALSVLRNVSKWNKRTFPEKKTLEPFYKNNKIEE-----GTYLDLLTKKHCLK-TLILFFTWFTGDCVYYGISLAFSDLSGHRHRDFVLISLPEIFANLLAIYAVGRIGRKKTTIIGFAVTAIGLMTLGTLMYNDVHYQSLDIVV-----GMIGKCFGIIAYCSNQILSVESYPTNIRSQAMGLFYVFSQLGGALAPWIAKGLLRYHVTLPLFVLGVFPIIASILALSLKETKGKDIDQ--QEADEGILENNEQSL-NKNETHC 2093
+ L +G GRFQ +++ +L F+ VF P C ++ Q ++ T + + + FN+ + W Y + S+ +EF+LVCD + L + S G ++G + G L DR GRK + L ++ +++ + M R V+G S + + E VG +R A ++ ++ G +++ +Y NWR L TAP ++L F +PES RW ++GR+D+A+ +++ + N+R L P N + E G LDL K TLI+F WF YYG+SL D + ++ E+ A +I+ + R GRK + +G + LG LM + + D+ V ++GK A+ + + S E +PT +R MGL +FS++GG L P + L YH LP+ + G PI+A +L L ET G+ + Q+ + G + +S+ ++ ET
Sbjct: 6 QVLAEIGDFGRFQIQLLILLCVLNFLSPFYFFAHVFMVLDEPHHCAVAWVKNHTFNLSAAEQLVLSVPLDTAGHPEPCLMFRPPPANASLQDILSHRFNETQPCD-MGWEYPENRLPSLKNEFNLVCDRKHLKDTTQSVFMAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLIGLATAFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAGLAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQKAASVNRR------KLSPELMNQLVPEKTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLGYYGLSLQVGDFGLDVYLTQLIFGAVEVPARCSSIFMMQRFGRKWSQ--------LGTLVLGGLMCIIIIFIPADLPVVVTMLAVVGKMATAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILTPLVIL-LGEYHAALPMLIYGSLPIVAGLLCTLLPETHGQGLKDTLQDLELGPHPRSPKSVPSEKETEA 534 The following BLAST results are available for this feature:
BLAST of TCONS_00051058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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