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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051062 ID=TCONS_00051062|Name=TCONS_00051062|organism=Clytia hemisphaerica|type=transcript|length=600bp
GTGAAATTAGATTTGTTTCACGCAGTGCAGCGGTTGGTAAAAACAATCAG
TAAACGGCACCCTTACTGTCAGGACATGTGCAAAGAGTTGACACTCGTCT
TTCGAGACATCAATGATACTGGTGATGAACGATCAAAGCCAACCCCACCA
CcaaatcaaattataaaaaacatggaGACATTCCTCACAACCTGGGAGAA
TGTCGAATTCAAAGGCTGGAAAGTCTTGACCAGCAAGTTCCTAAAACATT
GGGATAATTTAAAAGTGCATGTCGATCTTGGATGTTTATCTGGTATTCCT
GTAGGCCACGGAACCAACAAGAACGAAAACCTTCACCGGCAAATGCGGAT
CTTATTGCCAAGAAATAGACTTGGTGTCGACACAGCGGAGGCACTTTTTA
ACTCGCTATTTTATTACCACAACGAgagaaagaaaacgaaaatagGCACA
AAGGGACAACAAGTCAATATCAAACACGTCTGGCCTATCTGGCAATTTGC
TAAAGAAGAGCATCATTTCGGGATTTCCGATGCTCCTGTCAATAACAACA
TCGACTTCGACGAACCGTTTCTTATCGATTCACTCTACATGCATGACGAT Run BLAST on NCBI protein sequence of TCONS_00051062-protein >TCONS_00051062-protein ID=TCONS_00051062-protein|Name=TCONS_00051062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
VKLDLFHAVQRLVKTISKRHPYCQDMCKELTLVFRDINDTGDERSKPTPP
PNQIIKNMETFLTTWENVEFKGWKVLTSKFLKHWDNLKVHVDLGCLSGIP
VGHGTNKNENLHRQMRILLPRNRLGVDTAEALFNSLFYYHNERKKTKIGT
KGQQVNIKHVWPIWQFAKEEHHFGISDAPVNNNIDFDEPFLIDSLYMHDD Run BLAST on NCBI transcript from alignment at scaffold_193:342044..343255+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051062 ID=TCONS_00051062|Name=TCONS_00051062|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_193:342044..343255+ (Clytia hemisphaerica)
GTGAAATTAGATTTGTTTCACGCAGTGCAGCGGTTGGTAAAAACAATCAG
TAAACGGCACCCTTACTGTCAGGACATGTGCAAAGAGTTGACACTCGTCT
TTCGAGACATCAATGATACTGGTGATGAACGATCAAAGCCAACCCCACCA
CcaaatcaaattataaaaaacatggaGACATTCCTCACAACCTGGGAGAA
TGTCGAATTCAAAGGCTGGAAAGTCTTGACCAGCAAGTTCCTAAAACATT
GGGATAATTTAAAAGTGCATGTCGATCTTGGATGTTTATCTGGTATTCCT
GTAGGTATGTAAATTGCCACCCCTGCCTCAGCTACCCGGTGGTGTTTTAA
AGCCCAACGAGGTGATTGTCTTCGTAAAGAGGGAGGAGACACTCATATCT
TCAAGCAAGAAACAGTACACAATATGGGGGCATGTGTATTTTACTTAAaa
acatctactttataagaatcaaaggcATAACCCTTGAAAGACTGCCATAA
ACCGTTCGGTAACtatttcttacaaagtaaacgaGGAACAgcttataagc
aactactttgTAAGAATCCACGCGTAAACTCTTAAGGCTATTAAAAGTAg
gctatttttgaaaattttaaatgggACCTAAGTCAGACTATAATCATCAA
AAATTGTTAGGAAAAAATCACTATTTCATATTCAAGTTTATAAATATGTC
GATAGTCAAATTGTTATCTGACAACACCTGCTCTAGAAGAGAGGGAGTTG
TTCTTCCGATTCTATGATATTTATCGGTGCTTTATAAGTGCTTTTCACGG
AAGGCAGATCCTTTCTGGGCCCCAGCAATTTTATTGTTCAAACCATTTGA
GCGGAGGACACTTATTAGGGACTCTAGAGTTCAGaggttttattttcttt
ttattttgaatcacAGGCCACGGAACCAACAAGAACGAAAACCTTCACCG
GCAAATGCGGATCTTATTGCCAAGAAATAGACTTGGTGTCGACACAGCGG
AGGCACTTTTTAACTCGCTATTTTATTACCACAACGAgagaaagaaaacg
aaaatagGCACAAAGGGACAACAAGTCAATATCAAACACGTCTGGCCTAT
CTGGCAATTTGCTAAAGAAGAGCATCATTTCGGGATTTCCGATGCTCCTG
TCAATAACAACATCGACTTCGACGAACCGTTTCTTATCGATTCACTCTAC
ATGCATGACGAT Coding sequence (CDS) from alignment at scaffold_193:342044..343255+ >TCONS_00051062 ID=TCONS_00051062|Name=TCONS_00051062|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_193:342044..343255+ (Clytia hemisphaerica)
GTGAAATTAGATTTGTTTCACGCAGTGCAGCGGTTGGTAAAAACAATCAG
TAAACGGCACCCTTACTGTCAGGACATGTGCAAAGAGTTGACACTCGTCT
TTCGAGACATCAATGATACTGGTGATGAACGATCAAAGCCAACCCCACCA
CcaaatcaaattataaaaaacatggaGACATTCCTCACAACCTGGGAGAA
TGTCGAATTCAAAGGCTGGAAAGTCTTGACCAGCAAGTTCCTAAAACATT
GGGATAATTTAAAAGTGCATGTCGATCTTGGATGTTTATCTGGTATTCCT
GTAGGCCACGGAACCAACAAGAACGAAAACCTTCACCGGCAAATGCGGAT
CTTATTGCCAAGAAATAGACTTGGTGTCGACACAGCGGAGGCACTTTTTA
ACTCGCTATTTTATTACCACAACGAgagaaagaaaacgaaaatagGCACA
AAGGGACAACAAGTCAATATCAAACACGTCTGGCCTATCTGGCAATTTGC
TAAAGAAGAGCATCATTTCGGGATTTCCGATGCTCCTGTCAATAACAACA
TCGACTTCGACGAACCGTTTCTTATCGATTCACTCTACATGCATGACGAT
GTGAAATTAGATTTGTTTCACGCAGTGCAGCGGTTGGTAAAAACAATCAG
TAAACGGCACCCTTACTGTCAGGACATGTGCAAAGAGTTGACACTCGTCT
TTCGAGACATCAATGATACTGGTGATGAACGATCAAAGCCAACCCCACCA
CcaaatcaaattataaaaaacatggaGACATTCCTCACAACCTGGGAGAA
TGTCGAATTCAAAGGCTGGAAAGTCTTGACCAGCAAGTTCCTAAAACATT
GGGATAATTTAAAAGTGCATGTCGATCTTGGATGTTTATCTGGTATTCCT
GTAGGCCACGGAACCAACAAGAACGAAAACCTTCACCGGCAAATGCGGAT
CTTATTGCCAAGAAATAGACTTGGTGTCGACACAGCGGAGGCACTTTTTA
ACTCGCTATTTTATTACCACAACGAgagaaagaaaacgaaaatagGCACA
AAGGGACAACAAGTCAATATCAAACACGTCTGGCCTATCTGGCAATTTGC
TAAAGAAGAGCATCATTTCGGGATTTCCGATGCTCCTGTCAATAACAACA
TCGACTTCGACGAACCGTTTCTTATCGATTCACTCTACATGCATGACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051062-exon-scaffold_193-1491911889:342044..342347 | TCONS_00051062-exon-scaffold_193-1491911889:342044..342347 | Clytia hemisphaerica | exon |
| TCONS_00051062-exon-scaffold_193-1510915933:342044..342347 | TCONS_00051062-exon-scaffold_193-1510915933:342044..342347 | Clytia hemisphaerica | exon |
| TCONS_00051062-exon-scaffold_193-1575043694:342044..342347 | TCONS_00051062-exon-scaffold_193-1575043694:342044..342347 | Clytia hemisphaerica | exon |
| TCONS_00051062-exon-scaffold_193-1491911889:342960..343255 | TCONS_00051062-exon-scaffold_193-1491911889:342960..343255 | Clytia hemisphaerica | exon |
| TCONS_00051062-exon-scaffold_193-1510915933:342960..343255 | TCONS_00051062-exon-scaffold_193-1510915933:342960..343255 | Clytia hemisphaerica | exon |
| TCONS_00051062-exon-scaffold_193-1575043694:342960..343255 | TCONS_00051062-exon-scaffold_193-1575043694:342960..343255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:342044..343255 + |
Blast
The following BLAST results are available for this feature:
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