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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051064 ID=TCONS_00051064|Name=TCONS_00051064|organism=Clytia hemisphaerica|type=transcript|length=2098bp
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TggaagcttaaaaagctctatcaaACGGTGAAGAAACATTTGCAACAAGC
ATcttcGCCAAAGATCTAATGGAATCCCTGGAAAAAATGATTACTCCAGT
CTTGAATCAAGACCATATCAAGGCGCTTGAAGTGTTTGATATGGGGGAGC
TAGTGAAACTTAATTGTGGAACAAGGATTGGAGATCGTATTCAATTTACA
AGAGATGAAGGGGAGTACGAAGAATATGGTGTCATCCAATGCAAAAAGTT
TATGTCATCCGTTTGCAAAATGCCCAGCTTAGAAGAATTCGGCATCAATT
TAGACCCTAGGCTAAGtTCCAAATACATGCGTCAGTTGAAAGATGCAGTC
CGTTTGGCAGTTTGGGATGGCCTCGTTCCAATGTTTGGTGTGAGTGTTAA
AGATGTTGAATCTATCTCTAAAATAGAAGATGAGCTTTCTTTCGATCTCC
AATTCAACCTTACATTCAAAAATGGAGAAGAAAAGGAAGTCAAATTGAAC
GAGCAATTGGTCTATGAGAGCTTTTATAATAATGAAAGCCTTTACAAAGT
TGCAGAAAAGCCAGTATGTGCGATGATCGACATTGCTCTGGCAAAAGGTG
GACCTGAAAGCATAGCAGAATCGTACTATGCATGTATGCGTGGCCAGCAA
CAGGCTGGTGGTCAAAGCAACGACACATTAAGCTTGAGAACCAAGTTATC
GTGGTGTCTCCCATCCTTTGAAAACTGTCAAAACGGGGGCTTACAGCGTC
CCCCAGTCCCCCCTGAACAAAAAACGCCTACGGCGTTTTACACGCCTCGC
CGCCAGCAATTATATACCCTTGCCATACCATTAAAGTTTTCACAAAACAC
CTTCTGCGTCAAATTTCGCCGATTCCATACTggttggtatcttcgttgcg
tcacagcgaaaggtttgtttttattttagtttgtatctttgaaagacccc
atcggatttaggcagcgctgtcggatttaggacctctcatggaatgattt
ttttgtcatgttGTCCATACACGGTTCAGCGTATTTGAGTAAACGCTTTT
ACGACAAGGATCATAGATACGCCATCGAATATTGGGTGATTGCGGTCAGT
AACATTTGTTGAGGAGGTATGCTGCGAAGAACAGACACATTATTTATTAT
TGGACCTTTAttgaagtttttgacttttctaaaaaagcgatgcattgtgg
gattgtttcaagTGTATTACAAATAGGAACTTAGGAACTCTTAGGaactc
ctcgagggaattctattgtaatacacatcgcttttttagaaaaatcaaaa
acttcaatAAAGGTCTATTATTCAACACGACATAAGAAAAACTTTCCCAT
CAAGATTCAATATTAATATTATGTAGCTACGTATAATATAATGCAACACA
AGAAGGGGGcaaattgtgaatgttttggtgGTACATGGGATGTTTTGTGT
GTGACAAAACATGTTAAAGCAGCAATCAGAAAatacacttccattttatt
tttaatttttttattaagtcagtagtagaaaatttcaaattcactgctgc
tggtggtcattattcagttcaaacactttaaataatttccaaataaaata
agctctttcacagcattttCCTCATAATTCTTGAACATGTTACTGGCAAA
ATGAAATGCATCCGTAGAGGTTCGCTTTTTTGATTGCATGGATGTATGAA
AACTAGTAGTGAATTTATAAATtagtgatatttttgtaaaaatggatttt
attcTTTACCACTTTTAGTCATAACATCCTAAACTATCAAAAAGTCCA Run BLAST on NCBI transcript from alignment at scaffold_193:46818..49744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051064 ID=TCONS_00051064|Name=TCONS_00051064|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at scaffold_193:46818..49744- (Clytia hemisphaerica)
CAGCTGTTCCATGCGTAATATTGTGATTTCTTGAAGTGCTTGTCTTGTGG
TTAACCTTTAATTGTTACTATCAACATCAAATTTTCAGGTTTGCGAGCTC
ATCCTTTGATCAATGGACAAAGATTCACAAAAGTTACGGCAGCTACGTCA
GTGCATTCAATCTTCAACAGAAAGAATGATAATACGTGGCAGTACATGAT
CATGGGTTCGGATTTTGTGATCGATCTACTAGCCATCATAGTCATAATGA
AACCTTTGCGCACATTGATATTGCTTGTTCAGTCGCTGGACTGCCCAGTC
TGGAAGCTTAAAAAGCTCTATCAAACGGTGAAGAAACATTTGCAACAAGC
ATGTAAGAGTTATTCTGTAATTTCTTTCCAATTCTTTAAATTTCGACATC
TATTTAAAATTATAACATTGTTTAGGCCTACTTTAGACAGTAGACTCTCT
GCTGACTTTCGTCAAAATTGAGGGAAGGCAAGGCAGAAAGTCGGCCGTCT
AAACTAGAGCTTAGTTACATATCTTTCATAGTCAGGCTGTAAACATCGTT
TTTGTAGCATCATCATTCCTTATAAAGCTTGAAGACTGCTTTAGATAAAA
CGGATGTCTTTTTTTAGCTTCAAAATATGACAAAACAACGTACCCTACCC
TTTTCAAACACAAAAATTCCCTTGAGCCTGGAAAAACGTTGCAAGATGTG
ACTTTGATGGAAGGCTGGTTGGTAAACACGTCCCAGGGGAGAAGTGGTGT
TAAATGGTACATAAGAAACAAAACTGAGATCAAACGGGATCATTTACGGT
AGATACTATTGTTTAAACATTTTATATAAGTAACCAAAGTTTGTGTATTT
TTTCTAATCAACTATGTTACCCACTTATAGACAAATCTCAAACTTGACAC
AGCCAGATTTATCAACATACCTCTAAAATACTGACTATTGACTATAATTA
TAATATATTCATTTCATTTCTTTTTTTCAGCTTCGCCAAAGATCTAATGG
AATCCCTGGAAAAAATGATTACTCCAGTCTTGAATCAAGACCATATCAAG
GCGCTTGAAGTGTTTGATATGGGGGAGCTAGTGAAACTTAATTGTGGAAC
AAGGATTGGAGATCGTATTCAATTTACAAGAGATGAAGGGGAGTACGAAG
AATATGGTGTCATCCAATGCAAAAAGTTTATGTCATCCGTTTGCAAAATG
CCCAGCTTAGAAGAATTCGGCATCAATTTAGACCCTAGGCTAAGGTATTT
GATTCCTCCTATATTTATTGTCTTGACAGGTGTTTGATCAATCAACGACT
GATTATAGTAAGTATGAGGGTATGAGGGGACTGGTAGTATTTTTAAGATA
CATTGGTAATATTATCAAATGAAAATGTTTTAGTCATATCATGATAATAT
AGAAATAGGTACAAGATCTAAAAATATGAAAATGATTTTTTACAGTTCCA
AATACATGCGTCAGTTGAAAGATGCAGTCCGTTTGGCAGTTTGGGATGGC
CTCGTTCCAATGTTTGGTGTGAGTGTTAAAGATGTTGAATCTATCTCTAA
AATAGAAGATGAGCTTTCTTTCGATCTCCAATTCAACCTTACATTCAAAA
ATGGAGAAGAAAAGGAAGTCAAATTGAACGAGCAATTGGTCTATGAGAGC
TTTTATAATAATGAAAGCCTTTACAAAGTTGCAGAAAAGCCAGTATGTGC
GATGATCGACATTGCTCTGGCAAAAGGTGGACCTGAAAGCATAGCAGAAT
CGTACTATGCATGTATGCGTGGCCAGCAACAGGCTGGTGGTCAAAGCAAC
GACACATTAAGCTTGAGAACCAAGTTATCGTGGTGTCTCCCATCCTTTGA
AAACTGTCAAAACGGGGGCTTACAGCGTCCCCCAGTCCCCCCTGAACAAA
AAACGCCTACGGCGTTTTACACGCCTCGCCGCCAGCAATTATATACCCTT
GCCATACCATTAAAGTTTTCACAAAACACCTTCTGCGTCAAATTTCGCCG
ATTCCATACTGGTTGGTATCTTCGTTGCGTCACAGCGAAAGGTTTGTTTT
TATTTTAGTTTGTATCTTTGAAAGACCCCATCGGATTTAGGCAGCGCTGT
CGGATTTAGGACCTCTCATGGAATGATTTTTTTGTCATGTTGTCCATACA
CGGTTCAGCGTATTTGAGTAAACGCTTTTACGACAAGGATCATAGATACG
CCATCGAATATTGGGTGATTGCGGTCAGTAACATTTGTTGAGGAGGTATG
CTGCGAAGAACAGACACATTATTTATTATTGGACCTTTATTGAAGTTTTT
GACTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCAAGTGTATTACA
AATAGGAACTTAGGAACTCTTAGGAACTCCTCGAGGGAATTCTATTGTAA
TACACATCGCTTTTTTAGAAAAATCAAAAACTTCAATAAAGGTCTATTAT
TCAACACGACATAAGAAAAACTTTCCCATCAAGATTCAATATTAATATTA
TGTAGCTACGTATAATATAATGCAACACAAGAAGGGGGCAAATTGTGAAT
GTTTTGGTGGTACATGGGATGTTTTGTGTGTGACAAAACATGTTAAAGCA
GCAATCAGAAAATACACTTCCATTTTATTTTTAATTTTTTTATTAAGTCA
GTAGTAGAAAATTTCAAATTCACTGCTGCTGGTGGTCATTATTCAGTTCA
AACACTTTAAATAATTTCCAAATAAAATAAGCTCTTTCACAGCATTTTCC
TCATAATTCTTGAACATGTTACTGGCAAAATGAAATGCATCCGTAGAGGT
TCGCTTTTTTGATTGCATGGATGTATGAAAACTAGTAGTGAATTTATAAA
TTAGTGATATTTTTGTAAAAATGGATTTTATTCTTTACCACTTTTAGTCA
TAACATCCTAAACTATCAAAAAGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051064-exon-scaffold_193-1575043694:49393..49744 | TCONS_00051064-exon-scaffold_193-1575043694:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1575043694:48501..48764 | TCONS_00051064-exon-scaffold_193-1575043694:48501..48764 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1575043694:46818..48299 | TCONS_00051064-exon-scaffold_193-1575043694:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1510915933:49393..49744 | TCONS_00051064-exon-scaffold_193-1510915933:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1510915933:48501..48764 | TCONS_00051064-exon-scaffold_193-1510915933:48501..48764 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1510915933:46818..48299 | TCONS_00051064-exon-scaffold_193-1510915933:46818..48299 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1491911889:49393..49744 | TCONS_00051064-exon-scaffold_193-1491911889:49393..49744 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1491911889:48501..48764 | TCONS_00051064-exon-scaffold_193-1491911889:48501..48764 | Clytia hemisphaerica | exon |
| TCONS_00051064-exon-scaffold_193-1491911889:46818..48299 | TCONS_00051064-exon-scaffold_193-1491911889:46818..48299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:46818..49744 - |
Blast
The following BLAST results are available for this feature:
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