TCONS_00051072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051072
Unique NameTCONS_00051072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051072 ID=TCONS_00051072|Name=TCONS_00051072|organism=Clytia hemisphaerica|type=transcript|length=2369bp
TTGATGACTATGAATTGAAGcaaGATCAAAAAGAGGATAAATAATGTCTC
AGCAGGAAATTGTTATCAACGTAGCTGttgttaaaaacaaaattaaaaaa
gtttttacttgTGAGACTTTTCCGGAGATCCTCATTGGAGCAAAATGACG
AAGCAGAGATGAATCTTTGTCTATAGCAAATGATATATTCACGGTTAAGA
CAGTTAAGTACACTCTAACTTTTACAACAACAGAAGAAAATGTGGTTGAA
AATTCTCTGCGTTCTATGGTGGACGTTTTAATGAGAAAATCTTTGGCAAT
TCTAAAGACTCTTCCAGAAAAGGATAAAAAGATTGCACTTCACAACGAAA
TTATCAGGGATGTACAGCAAAAGCCTATCTTCGCTTCAAAATCCCAGGAT
GAAGGACACAAAATATCTAGATGGCCGTCCAGAAACAATAAACCAAGCCT
CGAGCAAGAGAAAATCAGTGGTTGAGATTCCAAAAAGTATATATACACTG
GGAATTATTCACTTGACAATCCTACATTGACACGACCGGACGACAATTAC
ATTTACCTACGGTGAAACCTTTCCCTTAAAGTACTATGTACTCTAATTTT
CGGCAACGAAAATAAACTTAAGTGACTGTCGTGACTGTACACTTTTAAAC
GTTTTTGAAGACCTGCATGGTCTTTTCAGTTGAAATAACATAGACCGTTT
CCATTAGATGAGACGATTTGCTTCCTTCAAATATTCGAGTTCTTTTTCGC
TTTTTTACAGGTTTCATAAATATAAAGGCTACCAGGATTGGaagaaatgg
agaaaaaaaacatcaccAATTGACATGAAAAGCTGTCAATCACACGCAGG
TTCAAAAAGTTGCTTTGATGGAAGTATTAGAAAAACGTGCGATTGTTTGG
CCTGAAGACTGGAAAGAAGACATTGTTGGCCTTTGTACATCATTTTCTTC
ATACAGTGATGAATTGAAAGTGGCAAATGAGAATCAACAAAACAGACAAT
CACAATTAAACCCTTCACGAGAGATTTGAAAATGTGCTAACTTTCAATAC
TGGTCTCCCGTCCCACGAGACCATgtcaacaaagatttggaaattcTATC
AAGCAAAGTGTCGGAATCAAATAAAAACGAACCTTTTCTATTGTCAGAGG
AACATTTTGATGAAACCATTCCACGATCTCGCCAATTAAAACGACTAAAG
GAAATCGCGTTAGAAGTTCCATGCATTTCTTTAAGCACTTTACTATTCAT
ACAAAAAGTTGCCCCACTGGCTAATGAAAACGAAAGAATGGACACTGTTA
CAAAAATGCTGAAAGCTGTAGAACCTGAAATCCCTATCTACCATACTCGA
GCAATGCGTAAACAGTTTCATGAAGAAGTCAAGCTCATTAGTTCAAAAAC
TCCTGCACATGTCATAAGACATATCTACAAGACATTGACTGGGGATCTAA
GTTCAGAACCAATATCCCAGGAAATTGACGAGCGTGTACAGTTAGCCATT
GAAACTGAAGATCCCGACCTGTTACTTGATCTCCGTCATCTGAGCAAAGG
AAGACCAGGGGAcacttttgatatcttttttgCAGAATTGGAGAAAATGG
TGGATGAAGTCACAGCTGCTGATGACCGGAGACATGGAGTTGTTCACATG
AGCGAGTTCTTAAGTATCCATCACTTGATTGAACAGGTGAAAAAGCGTGT
AGAAAAATTCCCTCCCAAACAACAGTAATACACGCTTTTGCCCCAACTAA
CATCCTCAAGAAAACTTCTCAGTATTACACTTGGCGCATCAAACTCAAAC
ACGCTATTCAAAGAAGACAGTTACATGCCTTCCACACAGATGCACATTGG
TGCTCCGCTCTTTACCGATACCTAAGAGAGATGTCCATCGAGAACAGGGA
GAAATGCATTTTCATCTCTTGTGATAAGGCAAAAGTTGACTTTGGTGAGC
CAGGAGCATTGGTTTCATATGGCGTACGTGGGAGAAAGAGCCCTATTTCA
ACCACATCCATGTTAGGTGCCCTCGATCATGATGTGAATCAAAAAGgcaA
ATGTCAGTGCAGCATCAGTTGCTACAATTGAATGTGGATAATCCATTTGT
TGGTGCTAGCCCTGTTGGTATAATTTCCTGTTCATGCCACGAAGATTTTT
GTTTGGAGATAAAATGTCCTTCATCCATAAGTCATTAATCGCCAACCGAT
GAAAAAACAAAGTTGCCTTACATTAAAGATTCTAAATTGAAAGACACTCA
TGGTTATTATTCCCAGTGCCAGCTACAAATGGGTATAACTGGTTTGAAAA
AATTGCTcctttttagtttaaaagtGCTACTTTTTAGTTTATACAGAACA
TGGATATCTGATAGACATT
Run BLAST on NCBI

protein sequence of TCONS_00051072-protein

>TCONS_00051072-protein ID=TCONS_00051072-protein|Name=TCONS_00051072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MDTVTKMLKAVEPEIPIYHTRAMRKQFHEEVKLISSKTPAHVIRHIYKTL
TGDLSSEPISQEIDERVQLAIETEDPDLLLDLRHLSKGRPGDTFDIFFAE
LEKMVDEVTAADDRRHGVVHMSEFLSIHHLIEQVKKRVEKFPPKQQ
Run BLAST on NCBI

transcript from alignment at scaffold_193:177326..182034-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051072 ID=TCONS_00051072|Name=TCONS_00051072|organism=Clytia hemisphaerica|type=transcript|length=4709bp|location=Sequence derived from alignment at scaffold_193:177326..182034- (Clytia hemisphaerica)
TTGATGACTATGAATTGAAGGTATGAAGATTTTCCCCCAACAAAAATGTC
TACATTAGGCCAAAGAAAAAAAGTTTTGTTTCCGGCAATCGACCAGGTGA
ACTATTTTATGAGAGTCACCGGCGCTAAAAATAGTTTGTTTTTTTTTTGG
TTGGAGTTGAGGAAAAAAATTTTTTTAACTAAAGATTCCAAACAATTAAA
CGAAAACGTTCCTGTCATCAATTAAGACCTCTTTTGTGTAAAAGAGTAAA
ATAACATGTATATAAAGAAAAGACGAAAGATTTTTTTTAATTTTTGTGAC
GTCAATAGATTTTTCCTTTCTTTTTATTTTCTTTTCTTTGTGTTTAAAAA
AATACTTTCTGTTTATATTTCACAAAGACGTTTAATCGCAGATATTTTGA
TAAAAGAGGAAGAGAGTGAAAGCATGAAGGAGTGAAAAAGAGTAAAATAA
CATGTATATAAAGAAAAGACGAAAGATTTTTTTTAATTTTTGTGACGTCA
ATAGATTTTTCCTTTCTTTTTATTTTCTTTTCTTTGTGTTTAAAAAAATA
CTTTCTGTTTATATTTCACAAAGACGTTTAATCGCAGATATTTTGATAAA
AGAGGAAGAGAGTGAAAGCATGAAGGAGTGAAAAAGAGTAAAATAACATG
TATATAAAGAAAAGACGAAAGATTTTTTTTAATTTTTGTGACGTCAATAG
ATTTTTCCTTTCTTTTTATTTTCTTTTCTTTGTGTTTAAAAAAATACTTT
CTGTTTATATTTCACAAAGACGTTTAATCGCAGATATTTTGATAAAAGAG
GAAGAGAGTGAAAGCATGAAGGAGTGAAAGTTAAAACTCCTCGCATTTGA
TTTAGGTTACTGTATTTGGAAAAAGAGTTGAAAACTTTAGCAAAGTACTC
TTGCTGGGGGTACTGTCTCTTTGATTGATGTTCTTATTATGCGTGTTATG
TCTGTTCGCAAAATTCACAGTTCTGATACTATATTTTTTAATATTTTAGC
AAGATCAAAAAGAGGATAAATAATGTCTCAGCAGGAAATTGTTATCAACG
TAGCTGTTGTTAAAAACAAAATTAAAAAAGTTTTTACTTGTGAGACTTTT
CCGGAGATCCTCATTGGAGCAAAATGACGAAGCAGAGATGAATCTTTGTC
TATAGCAAATGATATATTCACGGTTAAGACAGTTAAGTACACTCTAACTT
TTACAACAACAGAAGAAAATGTGGTTGAAAATTCTCTGCGTTCTATGGTG
GACGTTTTAATGAGAAAATCTTTGGCAATTCTAAAGACTCTTCCAGAAAA
GGATAAAAAGATTGCACTTCACAACGAAATTATCAGGGATGTACAGCAAA
AGCCTATCTTCGCTTCAAAATCCCAGGATGAAGGACACAAAATATCTAGA
TGGCCGTCCAGAAACAATAAACCAAGCCTCGAGCAAGAGAAAATCAGTGG
TTGAGATTCCAAAAAGGTAATTAAATCTGTCTAAAATGTTTTCGAAGGGC
TTTCTCAAGATCGAAAGGAAAAGGAGTGTTTTATCATTGAAAAGATCTTA
CTCAAAGAATTTCACATTTTATTTTATTTTAAAAGATTAAACATTCTATG
AAGTTTTTGCAAATTAAGGTGTATTGAATTTTTTTAAATTGAAATTAAAC
TTTCGAATCTTTCAGTATATATACACTGGGAATTATTCACTTGACAATCC
TACATTGACACGACCGGACGACAATTACATTTACCTACGGTGAAACCTTT
CCCTTAAAGTACTATGTACTCTAATTTTCGGCAACGAAAATAAACTTAAG
TGACTGTCGTGACTGTACACTTTTAAACGTTTTTGAAGACCTGCATGGTC
TTTTCAGTTGAAATAACATAGACCGTTTCCATTAGATGAGACGATTTGCT
TCCTTCAAATATTCGAGTTCTTTTTCGCTTTTTTACAGGTTTCATAAATA
TAAAGGCTACCAGGATTGGAAGAAATGGAGAAAAAAAACATCACCAATTG
ACATGAAAAGCTGTCAATCACACGCAGGTTCAAAAAGTACTTTTACACTT
TTATACTAACTTTCCTGTTTTGAAAGTGAATTTGTATTCACCCTTATTAG
TAGCTTTTTTGGACTAAAATTTCCATCTAAAGCTTGACGGAGTCTTGCTT
TTATTTCCAGGATAGCAGTTTTAGTACAGCAGTTTTTCCTAATATGTCTA
ATACTAAATAAGCATACTTGTTTCATTTTAGGTTGCTTTGATGGAAGTAT
TAGAAAAACGTGCGATTGTTTGGCCTGAAGACTGGAAAGAAGACATTGTT
GGCCTTTGTACATCATTTTCTTCATACAGTGATGAATTGAAAGTGGCAAA
TGAGAATCAACAAAACAGACAATCACAATTAAACCCTTCACGAGAGGTAA
AAACTGAGAGATTATCACTTTTTCGTTCATTAAATAAAAAACTTGAGAAA
CTTATATATCAGTATCTTTTTGAGCAGACCAGCTTTATATGCAAGAAATT
GAAAGGGTTTTTTACACAGAACTTGAGTTCTGTGACCTTTTTTATATAAA
GTTATAATTCTATTTAGATTTGAAAATGTGCTAACTTTCAATACTGGTCT
CCCGTCCCACGAGACCATGTCAACAAAGATTTGGAAATTCTATCAAGCAA
AGTGTCGGAATCAAATAAAAACGAACCTTTTCTATTGTCAGAGGAACATT
TTGATGAAACCATTCCACGATCTCGCCAATTAAAACGACTAAAGGAAATC
GCGTTAGAAGTTCCATGCATTTCTTTAAGGTAAGGAAAGGTTAAAAAGTA
TTCATTATTTTGTAACGTTTTGTTGATTTTATTGCTCTCGTATGTACCTT
TTTTTTTCTTCAAAATCCTTTGCTAAAGGTAAGTAGAGGGCAAAAAGTAA
GGAAATTAGATTTCTATGTTTTTAACTGTAGAAAAGCTTTTTGCAAACTG
AGTTGCGAGTGAACTGGTGTTTTTATTGAGTTGATATTTTTCTTTGTTAT
AAAGATCAATTTAATCTTATTCTCTTCTTTTTGTTTACACTATTGCTTGA
CGTTTCAAAACGTTTTACCTATTTTATCAACATAAGTATTTTACAGCCCT
GTATCATCAACCGTATCAAAAGAAAAAACTTCTCAGAAAGTGGGATTTCA
ACGAGACAGGGTTTAGCAAGTTAAGCTTGTTCTTGTTCTTGGCTTTGATT
ATTTTTTTTTAACATTCAAAATGTTTCAATATTGAATTTCTTTATATATA
CGATCCTGGTGGTGTGGTGGATCCAGCACTTTACTATTCATACAAAAAGT
TGCCCCACTGGCTAATGAAAACGAAAGAATGGACACTGTTACAAAAATGC
TGAAAGCTGTAGAACCTGAAATCCCTATCTACCATACTCGAGCAATGCGT
AAACAGTTTCATGAAGAAGTCAAGCTCATTAGTTCAAAAACTCCTGCACA
TGTCATAAGACATATCTACAAGACATTGACTGGGGATCTAAGTTCAGAAC
CAATATCCCAGGAAATTGACGAGCGTGTACAGTTAGCCATTGAAACTGAA
GATCCCGACCTGTTACTTGATCTCCGTCATCTGAGCAAAGGAAGACCAGG
GGACACTTTTGATATCTTTTTTGCAGAATTGGAGAAAATGGTGGATGAAG
TCACAGCTGCTGATGACCGGAGACATGGAGTTGTTCACATGAGCGAGTTC
TTAAGTATCCATCACTTGATTGAACAGGTGAAAAAGCGTGTAGAAAAATT
CCCTCCCAAACAACAGTAATACACGCTTTTGCCCCAACTAACATCCTCAA
GAAAACTTCTCAGTATTACACTTGGCGCATCAAACTCAAACACGCTATTC
AAAGAAGACAGTTACATGCCTTCCACACAGATGCACATTGGTGCTCCGCT
CTTTACCGATACCTAAGAGAGATGTCCATCGAGAACAGGGAGAAATGCAT
TTTCATCTCTTGTGATAAGGCAAAAGTTGACTTTGGTGAGCCAGGAGCAT
TGGTTTCATATGGCGTACGTGGGAGAAAGAGCCCTATTTCAACCACATCC
ATGTTAGGTGCCCTCGATCATGATGTGAATCAAAAAGGTATACATTCTTT
TTAAAGCGGCCAGAATGAATTTTGAATGATTTTTATGGTCCTTTTTAAAT
TTTAAAGGAGAGATTAAGCGATTTCGAAAATTGAGTTTAGATTCTTAAGC
TTGAAAAAGAGTAATACACCAATTCGGAAAAACGGCGCGTATTTTTGAAA
AAAGACTGGGTAAGAGTTTAGTGTGGTCGCAAAATCAAAGCATTGAAAAA
ACCTGTCATTGAAAACCCACTTATCAGTGTGGATGATATGTTGATGATGT
CGCAGTCAAAAAAGGTCTTTTTTTGAAAATTTGAAGGCAAATGTCAGTGC
AGCATCAGTTGCTACAATTGAATGTGGATAATCCATTTGTTGGTGCTAGC
CCTGTTGGTATAATTTCCTGTTCATGCCACGAAGATTTTTGTTTGGAGAT
AAAATGTCCTTCATCCATAAGTCATTAATCGCCAACCGATGAAAAAACAA
AGTTGCCTTACATTAAAGATTCTAAATTGAAAGACACTCATGGTTATTAT
TCCCAGTGCCAGCTACAAATGGGTATAACTGGTTTGAAAAAATTGCTCCT
TTTTAGTTTAAAAGTGCTACTTTTTAGTTTATACAGAACATGGATATCTG
ATAGACATT

Coding sequence (CDS) from alignment at scaffold_193:177326..182034-

>TCONS_00051072 ID=TCONS_00051072|Name=TCONS_00051072|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_193:177326..182034- (Clytia hemisphaerica)
ATGGACACTGTTACAAAAATGCTGAAAGCTGTAGAACCTGAAATCCCTAT
CTACCATACTCGAGCAATGCGTAAACAGTTTCATGAAGAAGTCAAGCTCA
TTAGTTCAAAAACTCCTGCACATGTCATAAGACATATCTACAAGACATTG
ACTGGGGATCTAAGTTCAGAACCAATATCCCAGGAAATTGACGAGCGTGT
ACAGTTAGCCATTGAAACTGAAGATCCCGACCTGTTACTTGATCTCCGTC
ATCTGAGCAAAGGAAGACCAGGGGACACTTTTGATATCTTTTTTGCAGAA
TTGGAGAAAATGGTGGATGAAGTCACAGCTGCTGATGACCGGAGACATGG
AGTTGTTCACATGAGCGAGTTCTTAAGTATCCATCACTTGATTGAACAGG
TGAAAAAGCGTGTAGAAAAATTCCCTCCCAAACAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032370XLOC_032370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051072-exon-scaffold_193-1575043694:182015..182034TCONS_00051072-exon-scaffold_193-1575043694:182015..182034Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:180569..181035TCONS_00051072-exon-scaffold_193-1575043694:180569..181035Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:179999..180369TCONS_00051072-exon-scaffold_193-1575043694:179999..180369Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:179639..179803TCONS_00051072-exon-scaffold_193-1575043694:179639..179803Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:179256..179467TCONS_00051072-exon-scaffold_193-1575043694:179256..179467Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:177948..178758TCONS_00051072-exon-scaffold_193-1575043694:177948..178758Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1575043694:177326..177648TCONS_00051072-exon-scaffold_193-1575043694:177326..177648Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:182015..182034TCONS_00051072-exon-scaffold_193-1510915933:182015..182034Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:180569..181035TCONS_00051072-exon-scaffold_193-1510915933:180569..181035Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:179999..180369TCONS_00051072-exon-scaffold_193-1510915933:179999..180369Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:179639..179803TCONS_00051072-exon-scaffold_193-1510915933:179639..179803Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:179256..179467TCONS_00051072-exon-scaffold_193-1510915933:179256..179467Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:177948..178758TCONS_00051072-exon-scaffold_193-1510915933:177948..178758Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1510915933:177326..177648TCONS_00051072-exon-scaffold_193-1510915933:177326..177648Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:182015..182034TCONS_00051072-exon-scaffold_193-1491911889:182015..182034Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:180569..181035TCONS_00051072-exon-scaffold_193-1491911889:180569..181035Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:179999..180369TCONS_00051072-exon-scaffold_193-1491911889:179999..180369Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:179639..179803TCONS_00051072-exon-scaffold_193-1491911889:179639..179803Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:179256..179467TCONS_00051072-exon-scaffold_193-1491911889:179256..179467Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:177948..178758TCONS_00051072-exon-scaffold_193-1491911889:177948..178758Clytia hemisphaericaexon
TCONS_00051072-exon-scaffold_193-1491911889:177326..177648TCONS_00051072-exon-scaffold_193-1491911889:177326..177648Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051072-proteinTCONS_00051072-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:177326..182034 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0352731	0.103335	0	0	0.0135153	0.180673	0.904779	1.49423	0.381836	0	0.421072	1.14857	0.138989	0.639661	0.875592	0.782664	1.5651	1.44424	0.914623	0.689254	0.694979	0	0.688059	0	0	0	0.000510947	0.040345	0.690635	0.852875
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top