TCONS_00051085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051085
Unique NameTCONS_00051085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051085 ID=TCONS_00051085|Name=TCONS_00051085|organism=Clytia hemisphaerica|type=transcript|length=310bp
CACCTTTCTTCTAACCCAAGTTGCTGTGACTGACAAAGGTTCATCTCGTT
TTTCGGATAAAAGTTCACTGAGTCTTTTATAGAAGCACTTAGTCTCTCTT
CCCATGCCGCCCATAGCGGTAAAAANGATTGGCTTTTGATGGTGTCTAGC
TGTTGACGGTTTATTTGATTTCGTTGTTTCTTGAAAGATGACTTTAGTTT
TTTGATCTCGTCATTGTCGATATCGTTCAGATGGTTTTGTGTTTTGATGT
TAGTCTGGAGCTGTTGCGTGAGCTCTTGTGAGTTGGAGAACTCTTGTTTC
GAAAGGTCGC
Run BLAST on NCBI

protein sequence of TCONS_00051085-protein

>TCONS_00051085-protein ID=TCONS_00051085-protein|Name=TCONS_00051085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
DLSKQEFSNSQELTQQLQTNIKTQNHLNDIDNDEIKKLKSSFKKQRNQIN
RQQLDTIKSQXFLPLWAAWEERLSASIKDSVNFYPKNEMNLCQSQQLGLE
ER
Run BLAST on NCBI

transcript from alignment at scaffold_193:115593..115902

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051085 ID=TCONS_00051085|Name=TCONS_00051085|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_193:115593..115902 (Clytia hemisphaerica)
GCGACCTTTCGAAACAAGAGTTCTCCAACTCACAAGAGCTCACGCAACAG
CTCCAGACTAACATCAAAACACAAAACCATCTGAACGATATCGACAATGA
CGAGATCAAAAAACTAAAGTCATCTTTCAAGAAACAACGAAATCAAATAA
ACCGTCAACAGCTAGACACCATCAAAAGCCAATCNTTTTTACCGCTATGG
GCGGCATGGGAAGAGAGACTAAGTGCTTCTATAAAAGACTCAGTGAACTT
TTATCCGAAAAACGAGATGAACCTTTGTCAGTCACAGCAACTTGGGTTAG
AAGAAAGGTG

Coding sequence (CDS) from alignment at scaffold_193:115593..115902

>TCONS_00051085 ID=TCONS_00051085|Name=TCONS_00051085|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_193:115593..115902 (Clytia hemisphaerica)
GACCTTTCGAAACAAGAGTTCTCCAACTCACAAGAGCTCACGCAACAGCT
CCAGACTAACATCAAAACACAAAACCATCTGAACGATATCGACAATGACG
AGATCAAAAAACTAAAGTCATCTTTCAAGAAACAACGAAATCAAATAAAC
CGTCAACAGCTAGACACCATCAAAAGCCAATCNTTTTTACCGCTATGGGC
GGCATGGGAAGAGAGACTAAGTGCTTCTATAAAAGACTCAGTGAACTTTT
ATCCGAAAAACGAGATGAACCTTTGTCAGTCACAGCAACTTGGGTTAGAA
GAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032378XLOC_032378Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051085-proteinTCONS_00051085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051085-exon-scaffold_193-1491911889:115593..115902TCONS_00051085-exon-scaffold_193-1491911889:115593..115902Clytia hemisphaericaexon
TCONS_00051085-exon-scaffold_193-1510915933:115593..115902TCONS_00051085-exon-scaffold_193-1510915933:115593..115902Clytia hemisphaericaexon
TCONS_00051085-exon-scaffold_193-1575043694:115593..115902TCONS_00051085-exon-scaffold_193-1575043694:115593..115902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:115593..115902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.397548	0	4.40749	3.86277	5.93069	4.64866	1.08853	1.21455	0.77119	2.56831	1.16757	0.293534	0.667718	1.78328	0.580077	0.302987	1.8662	0.880282	1.83857	1.1278	0	0	0.655369	0.33644	2.98219	6.13842	1.7138	1.01114
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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