TCONS_00051088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051088
Unique NameTCONS_00051088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051088 ID=TCONS_00051088|Name=TCONS_00051088|organism=Clytia hemisphaerica|type=transcript|length=524bp
GTAAGATATATGCTATACCAAAATAAAAATCTACATTAAAACTAGATTAT
TAAAAGATGCAGGATAAAAGGTAAGAACAAGGACCTTTTATTACCAAACG
TAGAGGATTTGATTTGTGCATTGTAAGATTATGACCATAAAAACGTGAAT
CAAGTTCCTACTTCAAGCAAAATCCTAGAATTCGAAGCAAAGTTTTCACA
GAAAATTCAGGAGAAATCTCTCCAATCTTGGGGCTTACAAATATAAACAA
TGTATACAATAGAGAATAAAATACCTCagtgaaaaaagataaaaagctAA
TCATACTGTCATAATAAATGAagaaagtttttcactttttgccATCTTTC
TCGTCTTTTTCAATAACCAAAAATGGTTTTAAATTGCACAGAGCACTACA
CACTTTCACAATATCATCACAATGATGTAGGATTGTGATTGGCATGACAG
TTTTTAAAATTCTGAATGTCTTTATGCGATTAATGGCTCTCTCAACATGA
ATACGAAGGTTTGCTACTTCCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_193:137198..137721

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051088 ID=TCONS_00051088|Name=TCONS_00051088|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at scaffold_193:137198..137721 (Clytia hemisphaerica)
AAAGGAAGTAGCAAACCTTCGTATTCATGTTGAGAGAGCCATTAATCGCA
TAAAGACATTCAGAATTTTAAAAACTGTCATGCCAATCACAATCCTACAT
CATTGTGATGATATTGTGAAAGTGTGTAGTGCTCTGTGCAATTTAAAACC
ATTTTTGGTTATTGAAAAAGACGAGAAAGATggcaaaaagtgaaaaactt
tctTCATTTATTATGACAGTATGATTagctttttatcttttttcactGAG
GTATTTTATTCTCTATTGTATACATTGTTTATATTTGTAAGCCCCAAGAT
TGGAGAGATTTCTCCTGAATTTTCTGTGAAAACTTTGCTTCGAATTCTAG
GATTTTGCTTGAAGTAGGAACTTGATTCACGTTTTTATGGTCATAATCTT
ACAATGCACAAATCAAATCCTCTACGTTTGGTAATAAAAGGTCCTTGTTC
TTACCTTTTATCCTGCATCTTTTAATAATCTAGTTTTAATGTAGATTTTT
ATTTTGGTATAGCATATATCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032381XLOC_032381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051088-exon-scaffold_193-1491911889:137198..137721TCONS_00051088-exon-scaffold_193-1491911889:137198..137721Clytia hemisphaericaexon
TCONS_00051088-exon-scaffold_193-1510915933:137198..137721TCONS_00051088-exon-scaffold_193-1510915933:137198..137721Clytia hemisphaericaexon
TCONS_00051088-exon-scaffold_193-1575043694:137198..137721TCONS_00051088-exon-scaffold_193-1575043694:137198..137721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:137198..137721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225256	0	0	0	2.12639	0.240043	0	1.22005	0.189818	0.705363	0.228214	0.300038	0.14981	0.388949	1.08721	1.44128	1.26824	1.21324	0.359177	0.876991	1.41563	0.796727	0.645684	0.234808	0	0.107921	2.00766	1.31854	1.25008	0.254727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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