TCONS_00051103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051103
Unique NameTCONS_00051103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051103 ID=TCONS_00051103|Name=TCONS_00051103|organism=Clytia hemisphaerica|type=transcript|length=362bp
AACAGATTTGAAGCAAAAACCTTCGCAAGCTCTACAATTCCTATCTGGAA
TAACCTACCCAGGGAATGCCGTGATGCTGAATCGATTGTATCTTTCAAGA
GTAGAGCAAGAAAACATTTCTTCACCTAATTCTCCAATAatttaaaatcc
aattttcCTGTTCCTTTTTGTTACTGTTCTTGTTCTGTTCGTagtggccc
ttcgtggaaacaattcttgAGCTGTCTAAAAGCTCTAGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCGTagtggcccttcgtggaaacaattc
ttgAGCTGTCTAAAAGCTCTAGAATTTTTCGGAGCCAGCCACTTAAAACA
ttcgttattatt
Run BLAST on NCBI

transcript from alignment at scaffold_193:345627..345988

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051103 ID=TCONS_00051103|Name=TCONS_00051103|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_193:345627..345988 (Clytia hemisphaerica)
aataataacgaaTGTTTTAAGTGGCTGGCTCCGAAAAATTCTAGAGCTTT
TAGACAGCTcaagaattgtttccacgaagggccactACGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCTAGAGCTTTTAGACAGCTcaagaat
tgtttccacgaagggccactACGAACAGAACAAGAACAGTAACAAAAAGG
AACAGgaaaattggattttaaatTATTGGAGAATTAGGTGAAGAAATGTT
TTCTTGCTCTACTCTTGAAAGATACAATCGATTCAGCATCACGGCATTCC
CTGGGTAGGTTATTCCAGATAGGAATTGTAGAGCTTGCGAAGGTTTTTGC
TTCAAATCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032396XLOC_032396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051103-exon-scaffold_193-1491911889:345627..345988TCONS_00051103-exon-scaffold_193-1491911889:345627..345988Clytia hemisphaericaexon
TCONS_00051103-exon-scaffold_193-1510915933:345627..345988TCONS_00051103-exon-scaffold_193-1510915933:345627..345988Clytia hemisphaericaexon
TCONS_00051103-exon-scaffold_193-1575043694:345627..345988TCONS_00051103-exon-scaffold_193-1575043694:345627..345988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:345627..345988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39128	0.924917	2.4419	2.46047	2.00877	0.315239	1.78871	1.72525	1.85152	2.99841	1.07253	1.38988	2.46746	2.21631	0.878407	1.40284	0.174072	0.89209	1.23247	0	1.12098	1.31226	0.26587	2.17543	1.94903	2.34821	2.71952	1.51107	3.0041	2.78723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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