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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051105 ID=TCONS_00051105|Name=TCONS_00051105|organism=Clytia hemisphaerica|type=transcript|length=1333bpRun BLAST on NCBI protein sequence of TCONS_00051105-protein >TCONS_00051105-protein ID=TCONS_00051105-protein|Name=TCONS_00051105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp MGGEKDILIPPVKGYRPRCFFDININNVSVGRIILELFADICPKTCENFRRun BLAST on NCBI transcript from alignment at scaffold_194:402..23492+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051105 ID=TCONS_00051105|Name=TCONS_00051105|organism=Clytia hemisphaerica|type=transcript|length=23091bp|location=Sequence derived from alignment at scaffold_194:402..23492+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_194:402..23492+ >TCONS_00051105 ID=TCONS_00051105|Name=TCONS_00051105|organism=Clytia hemisphaerica|type=CDS|length=7020bp|location=Sequence derived from alignment at scaffold_194:402..23492+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051105 vs. Swiss-Prot (Human)
Match: PPIG (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2) HSP 1 Score: 243.817 bits (621), Expect = 6.221e-72 Identity = 117/176 (66.48%), Postives = 143/176 (81.25%), Query Frame = 3
Query: 405 VKGYRPRCFFDININNVSVGRIILELFADICPKTCENFRALCTGEKGDGKTTLKPLHYKRTVFHRIVAGFIIQXXXXXXXXXXXXESIYGGTFKDESFEVEHNQPYLLSMANRGPNTNGSQFFITLAPAPHLDKVHCVFGRVLSGQEIVRDMENQKVNDNHTPYAEIRVTHCGELV 932
+K RPRCFFDI INN GR++ ELF+D+CPKTCENFR LCTGEKG GK+T KPLHYK +FHR+V F++QGGDFS G+G GGESIYGG F+DESF V+HN+ +LLSMANRG +TNGSQFFIT P PHLD H VFG+V+SGQE+VR++ENQK + P+AE+R+ CGEL+
Sbjct: 3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178 The following BLAST results are available for this feature:
BLAST of TCONS_00051105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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