TCONS_00051106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051106
Unique NameTCONS_00051106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051106 ID=TCONS_00051106|Name=TCONS_00051106|organism=Clytia hemisphaerica|type=transcript|length=561bp
CAAAGAAAACAGAGATTGATGGAATTGTATGGATATAATGGGTCTCGCTT
ATTAAAATATAGATATACAGATATAAGATTATTGTGAACATTAGTCCAGC
TTTTAAAGGATGGCCTAGGCTATGATCTCCTTTGGACAATACCATCAACT
ATGGTTTGATTAAGTTAATTGACTTTATTCtattaaacaaacaaacagta
tttatagcaaaaagaattgtGTTTGTCATGGCACAAAAACTTACAACTGA
TGCATTCTCAAGTTTCTGGAAATTGTGCAAAAGATTATCAAATGAAAGCA
GTTACAAGTTGAAGACATCTTTAATTAAAGAATATATCACAAAGAAATCT
GATAACTCAGGAAAGTATCAAGGCAACCTTTACTTGTTGGCCAAATTTCT
GCTACCtggaaaagaaaagagaatCTATAATGTAAAAGACAAACAGTTGC
TGAAATATTTCAGCCAgATTTTCAAAACAGATTTAAAGTCAATGACAGAA
CATCTTGAAAAACAGggaGTTGTTTCAGATACTGTGATGGATTTCTTTAG
TAAAAGCCATA
Run BLAST on NCBI

protein sequence of TCONS_00051106-protein

>TCONS_00051106-protein ID=TCONS_00051106-protein|Name=TCONS_00051106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MAQKLTTDAFSSFWKLCKRLSNESSYKLKTSLIKEYITKKSDNSGKYQGN
LYLLAKFLLPGKEKRIYNVKDKQLLKYFSQIFKTDLKSMTEHLEKQGVVS
DTVMDFFSKSH
Run BLAST on NCBI

transcript from alignment at scaffold_195:3..2196+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051106 ID=TCONS_00051106|Name=TCONS_00051106|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_195:3..2196+ (Clytia hemisphaerica)
CAAAGAAAACAGAGATTGATGGAATTGTATGGATATAATGGGTCTCGCTT
ATTAAAATATAGATATACAGATATAAGATTATTGTGAACATTAGTCCAGC
TTTTAAAGGATGGCCTAGGCTATGATCTCCTTTGGACAATACCATCAACT
ATGGTTTGATTAAGTTAATTGACTTTATTCtattaaacaaacaaacagta
tttatagcaaaaagaattgtGTTTGTCATGGCACAAAAACTTACAACTGA
TGCATTCTCAAGTTTCTGGAAATTGTGCAAAAGATTATCAAATGAAAGCA
GTTACAAGTTGAAGACATCTTTAATTAAAGAATATATCACAAAGAAATCT
GATAACTCAGGTAACGCAATAATTATCCAAGTAAAggaatttcttttaaa
tttatcCTTTATTTTTGGTATTCATTATGTACGTAACTTGAAAAAACACA
GATCAAAATCACAGGATATATATGTAAACTTTGATGTATGAGACATCtgt
aattttatatcatttattTTAGTATGACCTAAGACGTTACTAGTGTTATA
TAAAAgtaaatgattttaaaaattgatatttattttaaaactacCTTAGG
AAAGTATCAAGGCAACCTTTACTTGTTGGCCAAATTTCTGCTACCtggaa
aagaaaagagaatCTATAATGTAAAAGACAAACAGTTGCTGAAATATTTC
AGCCAggtttgttaaaatatttttatcgccgatccaaaaaatatctgcaa
tctgattggttaaaaagagtacaatatatcttgtattttacatgtacaaa
atataaattgatgaacagatgttgttgcattgtagcggtagaagcaatct
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNcacaaaaagtgcattttttgggtcaccgatataT
TAgctatcagacatttgctcgtacaatatggaaatatttcactcgttccg
gattttctgtatattttcctcgcctaaaggctcggaaaatattgtacgga
aaaatctcggcactcgtaaaatatttctcatattgtactcgtaACTGTTC
AATAACTATTACTTATAGNttcgattcccctaccccttagctttccaaaa
atgtataacaagtgcttctaacaaaacagtcaagcgattccaaaaaatcg
aacaaaattccccctactagaAGGCCTAAATTATGTGGAAACAAACTGAA
TGTGATTTGTGTGAGATCTTAGGCTTGGATGTTAAAGTTGTCGTTCTTAT
AGTTTTAAACCTTTTTTGCTATTAAGGTGGAATATGCATTTGGTTGACAA
GGAAGAAGAGCCCCAAGACTGTTCAATTGAGTAGGTGAGCTGCAAAAGAA
AGAAATCTGGTGGTCTGGTGGATTGTCTTTGGGGTGAAAATTGACTAGAA
TTACAAATTTTATGCAATAAAAACTACTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaaaagagtacaatatatct
tgtattttacatgtacaaaatataaattgatgaacagatgttgttgcatt
gtagcggtagaagcaatctaacatcactttgctacaaaagtgccctgtgc
ttttttccaacacaaaagtGCAACTGNattgtagcggtagaagcaatcta
acatcactttgctacaaaagtgccctgtgcttttttccaacacaaaagtG
CAACTGTGTCGGATAactattatatattttttagatttatcagaattaat
tAAGAGCATTTTCTAAATAGATTTGGCAAATATTATATAAGATggtgaat
atttttcaataactTTTTAAAGACCCTCACAATTTTATGATTGTAATCCT
GTTTTCTATACCTAGATTTTCAAAACAGATTTAAAGTCAATGACAGAACA
TCTTGAAAAACAGGTTTGTTTGTTATTCCAGCTTTAATTTTGTATTAATT
TCTGTATTTTACCAACATTGTGGTATGGTCGTGTTGAGATTTTCTATTAT
TTCTTTTTATCTATttatttactttctttttttgtttttttatttcaggg
aGTTGTTTCAGATACTGTGATGGATTTCTTTAGTAAAAGCCATA

Coding sequence (CDS) from alignment at scaffold_195:3..2196+

>TCONS_00051106 ID=TCONS_00051106|Name=TCONS_00051106|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_195:3..2196+ (Clytia hemisphaerica)
ATGGCACAAAAACTTACAACTGATGCATTCTCAAGTTTCTGGAAATTGTG
CAAAAGATTATCAAATGAAAGCAGTTACAAGTTGAAGACATCTTTAATTA
AAGAATATATCACAAAGAAATCTGATAACTCAGGAAAGTATCAAGGCAAC
CTTTACTTGTTGGCCAAATTTCTGCTACCtggaaaagaaaagagaatCTA
TAATGTAAAAGACAAACAGTTGCTGAAATATTTCAGCCAgATTTTCAAAA
CAGATTTAAAGTCAATGACAGAACATCTTGAAAAACAGggaGTTGTTTCA
GATACTGTGATGGATTTCTTTAGTAAAAGCCATATGGCACAAAAACTTAC
AACTGATGCATTCTCAAGTTTCTGGAAATTGTGCAAAAGATTATCAAATG
AAAGCAGTTACAAGTTGAAGACATCTTTAATTAAAGAATATATCACAAAG
AAATCTGATAACTCAGGAAAGTATCAAGGCAACCTTTACTTGTTGGCCAA
ATTTCTGCTACCtggaaaagaaaagagaatCTATAATGTAAAAGACAAAC
AGTTGCTGAAATATTTCAGCCAgATTTTCAAAACAGATTTAAAGTCAATG
ACAGAACATCTTGAAAAACAGggaGTTGTTTCAGATACTGTGATGGATTT
CTTTAGTAAAAGCCATATGGCACAAAAACTTACAACTGATGCATTCTCAA
GTTTCTGGAAATTGTGCAAAAGATTATCAAATGAAAGCAGTTACAAGTTG
AAGACATCTTTAATTAAAGAATATATCACAAAGAAATCTGATAACTCAGG
AAAGTATCAAGGCAACCTTTACTTGTTGGCCAAATTTCTGCTACCtggaa
aagaaaagagaatCTATAATGTAAAAGACAAACAGTTGCTGAAATATTTC
AGCCAgATTTTCAAAACAGATTTAAAGTCAATGACAGAACATCTTGAAAA
ACAGggaGTTGTTTCAGATACTGTGATGGATTTCTTTAGTAAAAGCCATA
TGGCACAAAAACTTACAACTGATGCATTCTCAAGTTTCTGGAAATTGTGC
AAAAGATTATCAAATGAAAGCAGTTACAAGTTGAAGACATCTTTAATTAA
AGAATATATCACAAAGAAATCTGATAACTCAGGAAAGTATCAAGGCAACC
TTTACTTGTTGGCCAAATTTCTGCTACCtggaaaagaaaagagaatCTAT
AATGTAAAAGACAAACAGTTGCTGAAATATTTCAGCCAgATTTTCAAAAC
AGATTTAAAGTCAATGACAGAACATCTTGAAAAACAGggaGTTGTTTCAG
ATACTGTGATGGATTTCTTTAGTAAAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032398XLOC_032398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051106-exon-scaffold_195-1491911889:3..362TCONS_00051106-exon-scaffold_195-1491911889:3..362Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1510915933:3..362TCONS_00051106-exon-scaffold_195-1510915933:3..362Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1575043694:3..362TCONS_00051106-exon-scaffold_195-1575043694:3..362Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1491911889:602..708TCONS_00051106-exon-scaffold_195-1491911889:602..708Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1510915933:602..708TCONS_00051106-exon-scaffold_195-1510915933:602..708Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1575043694:602..708TCONS_00051106-exon-scaffold_195-1575043694:602..708Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1491911889:1968..2015TCONS_00051106-exon-scaffold_195-1491911889:1968..2015Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1510915933:1968..2015TCONS_00051106-exon-scaffold_195-1510915933:1968..2015Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1575043694:1968..2015TCONS_00051106-exon-scaffold_195-1575043694:1968..2015Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1491911889:2151..2196TCONS_00051106-exon-scaffold_195-1491911889:2151..2196Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1510915933:2151..2196TCONS_00051106-exon-scaffold_195-1510915933:2151..2196Clytia hemisphaericaexon
TCONS_00051106-exon-scaffold_195-1575043694:2151..2196TCONS_00051106-exon-scaffold_195-1575043694:2151..2196Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051106-proteinTCONS_00051106-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_195supercontigscaffold_195:3..2196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.47417	5.11083	6.39064	10.0482	15.6308	8.91466	15.5496	14.4361	10.0221	10.3099	16.1338	9.19612	11.1272	7.37898	6.69607	9.15128	7.5662	9.53878	5.46419	8.0723	13.0581	14.2596	13.0586	17.7557	6.49276	12.3619	15.6168	12.5369	15.9971	18.2361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012308DNA_ligase_ATP-dep_N
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0003677 DNA binding
molecular_function GO:0003910 DNA ligase (ATP) activity
Blast
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BLAST of TCONS_00051106 vs. Swiss-Prot (Human)
Match: DNLI3 (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.132e-18
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  264 FWKLCKRLSNESSYKLKTSLIKEYITKKSDNSGKYQGNLYLLAKFLLPGKEKRIYNVKDKQLLKYFSQIFKTDLKSMTEHLEKQGVVSDTVMDFFSKS 557
            F KLC  +++  SY  KT +I++++ K S   G + G++YL  K LLPG  K +YN+ DKQ++K FS+IF  +   M   LE QG VS+T+  FF +S
Sbjct:  266 FRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDG-FHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLE-QGDVSETIRVFFEQS 361
The following BLAST results are available for this feature:
BLAST of TCONS_00051106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI38.132e-1842.86DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2[more]
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