TCONS_00051113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051113
Unique NameTCONS_00051113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051113 ID=TCONS_00051113|Name=TCONS_00051113|organism=Clytia hemisphaerica|type=transcript|length=429bp
ATTGATTTGAGTTTATTTAATAAAGTTAATTTATATTTCATGTAAACCTA
CAAATATTTTAACCATACTTTTTAGATGATCATATTCCACATTCGGATAA
CGAAAACTCTCTCACTGCAACCCCAAGATCCCCACTTATTGACATTGAGG
TTATATCCCCACAAAAAGATGTTTGTGACCGCAGTCCAGAGCGACTAGAA
GGCTCTCTTCTGACACCAAAAAGTGGCGGAAGTGTTCCTGGAGGAGCTAT
GTTCGATTCATCTGCTTCATCATTTGGGTTTTCAAATTATAGTGAATTCC
TGAATGATGACTCCCTTGGTACTTCGGTATCCCGCTCCATAAATATGGAT
CTATATCGAGATGGTTATGACCAACATCAGCTCCTTCAAGTGCAACATCA
ACCactccaacaacaacaaccaccacaac
Run BLAST on NCBI

transcript from alignment at scaffold_197:56786..57295+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051113 ID=TCONS_00051113|Name=TCONS_00051113|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_197:56786..57295+ (Clytia hemisphaerica)
ATTGATTTGAGTTTATTTAATAAAGTTAATTTATATTTCATGTAAACCTA
CAAATATTTTAACCATACTTTTTAGATGATCATATTCCACATTCGGATAA
CGAAAACTCTCTCACTGCAACCCCAAGATCCCCACTTATTGACATTGAGG
TTATATCCCCACAAAAAGATGTTTGTGACCGCAGTCCAGAGCGACTAGAA
GGCTCTCTTCTGACACCAAAAAGTGGCGGAAGTGTTCCTGGAGGAGCTAT
GTTCGATTCATCTGCTTCATCATTTGGGTTTTCAAATTATAGTGAATTCC
TGAATGATGACTCCCTTGGTACTTCGGTATCCCGCTCCATAAATATGGAT
CTATATCGAGATGGTTATGACCAACATCAGCTCCTTCAAGTGCAACATCA
ACCactccaacaacaacaacatcaacaaGGACAgccaccacaacaacaac
aaccaccacACCAACAACGACAACAccaacaacaacgacaacaacaacaa
ccaccacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032404XLOC_032404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051113-exon-scaffold_197-1491911889:56786..57205TCONS_00051113-exon-scaffold_197-1491911889:56786..57205Clytia hemisphaericaexon
TCONS_00051113-exon-scaffold_197-1510915933:56786..57205TCONS_00051113-exon-scaffold_197-1510915933:56786..57205Clytia hemisphaericaexon
TCONS_00051113-exon-scaffold_197-1575043694:56786..57205TCONS_00051113-exon-scaffold_197-1575043694:56786..57205Clytia hemisphaericaexon
TCONS_00051113-exon-scaffold_197-1491911889:57287..57295TCONS_00051113-exon-scaffold_197-1491911889:57287..57295Clytia hemisphaericaexon
TCONS_00051113-exon-scaffold_197-1510915933:57287..57295TCONS_00051113-exon-scaffold_197-1510915933:57287..57295Clytia hemisphaericaexon
TCONS_00051113-exon-scaffold_197-1575043694:57287..57295TCONS_00051113-exon-scaffold_197-1575043694:57287..57295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:56786..57295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	26.0966	24.9181	14.7203	19.9921	12.7739	18.6841	11.7634	9.34379	11.7976	8.57632	0.18314	0	0	0	0	0	0	0.228154	0	0	3.11653	9.88951	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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