TCONS_00051114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051114
Unique NameTCONS_00051114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051114 ID=TCONS_00051114|Name=TCONS_00051114|organism=Clytia hemisphaerica|type=transcript|length=432bp
ATTGATTTGAGTTTATTTAATAAAGTTAATTTATATTTCATGTAAACCTA
CAAATATTTTAACCATACTTTTTAGATGATCATATTCCACATTCGGATAA
CGAAAACTCTCTCACTGCAACCCCAAGATCCCCACTTATTGACATTGAGG
TTATATCCCCACAAAAAGATGTTTGTGACCGCAGTCCAGAGCGACTAGAA
GGCTCTCTTCTGACACCAAAAAGTGGCGGAAGTGTTCCTGGAGGAGCTAT
GTTCGATTCATCTGCTTCATCATTTGGGTTTTCAAATTATAGTGAATTCC
TGAATGATGACTCCCTTGGTACTTCGGTATCCCGCTCCATAAATATGGAT
CTATATCGAGATGGTTATGACCAACATCAGCTCCTTCAAGTGCAACATCA
ACCactccaacaacaacaaccaccacaacaac
Run BLAST on NCBI

transcript from alignment at scaffold_197:56786..57316+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051114 ID=TCONS_00051114|Name=TCONS_00051114|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_197:56786..57316+ (Clytia hemisphaerica)
ATTGATTTGAGTTTATTTAATAAAGTTAATTTATATTTCATGTAAACCTA
CAAATATTTTAACCATACTTTTTAGATGATCATATTCCACATTCGGATAA
CGAAAACTCTCTCACTGCAACCCCAAGATCCCCACTTATTGACATTGAGG
TTATATCCCCACAAAAAGATGTTTGTGACCGCAGTCCAGAGCGACTAGAA
GGCTCTCTTCTGACACCAAAAAGTGGCGGAAGTGTTCCTGGAGGAGCTAT
GTTCGATTCATCTGCTTCATCATTTGGGTTTTCAAATTATAGTGAATTCC
TGAATGATGACTCCCTTGGTACTTCGGTATCCCGCTCCATAAATATGGAT
CTATATCGAGATGGTTATGACCAACATCAGCTCCTTCAAGTGCAACATCA
ACCactccaacaacaacaacatcaacaaGGACAgccaccacaacaacaac
aaccaccacACCAACAACGACAACAccaacaacaacgacaacaacaacaa
ccaccacaacaacgacaaccaccacaacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032404XLOC_032404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051114-exon-scaffold_197-1491911889:56786..57205TCONS_00051114-exon-scaffold_197-1491911889:56786..57205Clytia hemisphaericaexon
TCONS_00051114-exon-scaffold_197-1510915933:56786..57205TCONS_00051114-exon-scaffold_197-1510915933:56786..57205Clytia hemisphaericaexon
TCONS_00051114-exon-scaffold_197-1575043694:56786..57205TCONS_00051114-exon-scaffold_197-1575043694:56786..57205Clytia hemisphaericaexon
TCONS_00051114-exon-scaffold_197-1491911889:57305..57316TCONS_00051114-exon-scaffold_197-1491911889:57305..57316Clytia hemisphaericaexon
TCONS_00051114-exon-scaffold_197-1510915933:57305..57316TCONS_00051114-exon-scaffold_197-1510915933:57305..57316Clytia hemisphaericaexon
TCONS_00051114-exon-scaffold_197-1575043694:57305..57316TCONS_00051114-exon-scaffold_197-1575043694:57305..57316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:56786..57316 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.31125e-06	8.32264e-07	1.57591e-06	2.84464e-07	2.19722e-08	2.22917e-06	1.31158e-06	3.57348e-07	9.50407e-08	3.51025e-09	0	0	0	0	0	0	0	7.3169e-09	0	0	6.47949e-08	2.08414e-07	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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