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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051121 ID=TCONS_00051121|Name=TCONS_00051121|organism=Clytia hemisphaerica|type=transcript|length=389bp
CTGTGCCTTAAAGTAtgcttaaagactttttttGTGAAGAGCTTTTAAAT
AGTATGTACAATTTCGCTTTAGCGTAAAATGCTGAAACATTTAGTGGCTG
GGAAGGCTGCGAGAAGAGCAGTGTTAATTTCGCTCGATGCTCTAATGTCG
CGTGGGCTACAATCCAAATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAG
TTTCAAGGAGACGAAACATTGCAAATGTATAATTGATGCTTTGAAGCAAA
AATACCCCGTCGACCTTGACCGAATGATAGGGGATGTCAggggcggtgcg
acacccctgcaaaacatgcactcgCAGGGTATGCTCCAGAGTCTtttttt
gtcgcagcttgtttttagcctacccgagttgtttttccg Run BLAST on NCBI protein sequence of TCONS_00051121-protein >TCONS_00051121-protein ID=TCONS_00051121-protein|Name=TCONS_00051121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MLKHLVAGKAARRAVLISLDALMSRGLQSKFSKAGKAGKKSFKETKHCKC
IIDALKQKYPVDLDRMIGDVRGGATPLQNMHSQGMLQSLFLSQLVFSLPE
LFF Run BLAST on NCBI transcript from alignment at scaffold_197:115313..116763- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051121 ID=TCONS_00051121|Name=TCONS_00051121|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_197:115313..116763- (Clytia hemisphaerica)
CTGTGCCTTAAAGTATGCTTAAAGACTTTTTTTGTGAAGAGCTTTTAAAT
AGTATGTACAATTTCGCTTTAGCGTAAAATGCTGAAACATTTAGTGGCTG
GGAAGGCTGCGAGAAGAGCAGTGTTAATTTCGCTCGATGCTCTAATGTCG
CGTGGGCTACAATCCAAATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAG
TTTCAAGGAGACGAAACATTGCAAATGTATAATTGGTATGTGAATTTTTT
TGACTATATTGTACAACCATAGAATTACTACAGTAATAAATAATGAAATA
ATATCAAACTTTCCCGAGCAGAAACTTTTGCGATTTTCGCAAATTTGGCC
CTTTTCGAAAGTAAATGTTTTACAAAATTCTAGGAAGGTCCATTCGCGAA
AGAAATTGAAAATCTCTAAAACTTCAAACTTTGAATAAAATGTACCTTTT
ATGGCACTTTTTAGCATGCTAAAAGACTAAGAAGTAGAAGTATTTGTGCT
CCTAAACCATTCTAAGCAAATTTACCACCCGGACATAATTTTGACAATGA
GTAGATATACTGAACGCATCATAAGCCCTTTGGATAGTAAAGGGGAAACT
ATAGACTGCTTTAGACTATTGATGATTTTTCGCCAACCCCGGACAATATT
TAGCAAAAAATTCGTCCCCTGTGGGAAAAATATCCTGGAATTTCAGCCCC
TTAGAAATTGACTTCGATTTTATCCCCATTCGGAATTCATTGTTTAGAAA
TTTCACATCAAAATGGGCTTTTCCAGAAATAGTCCGTGCCCTCCCTGTTG
AGGATATCGGATATCCAGGGGGTTAACGATTTTTGTTCAAAAGTGGATAC
CCAGGGGTTTAAATATCTACAAGGGAGTGAATATCCAGGGGGTAAAGTGT
CTTTTCAAGTAAAAATACGATATCCAGGAGCAAGCATCTTTATAAGAGAG
GATATCCAGGGAGTTGAGCATATTTTTAAGAGTGGATATCCGCAACAGTG
GGGGTAAAAAATTTTTCTGGAAAAGCCCAATCATTCCCGCTGGATTTTTT
AACCTGAAACCTGGTCGATTTTTATCCCCACTGTAGGGTAAAGTTTCAAC
GGGGCTGTGAGACAGGGGTGTCTAACAGGGGTGTCTAAAATGTATGTGTT
AATAAGGAGAAAATACCTTGTAATTTGTGAGTATAATTTTTGATGGGAAA
AGATTGAAAACATAAGTTGCTCCATACTTTCAGGGTGGAAACTATTTTAC
ACCATCAATGATTTATCTTTCAATATCATTTTTTTCAATTTTTACAGATG
CTTTGAAGCAAAAATACCCCGTCGACCTTGACCGAATGATAGGGGATGTC
AGGGGCGGTGCGACACCCCTGCAAAACATGCACTCGCAGGGTATGCTCCA
GAGTCTTTTTTTGTCGCAGCTTGTTTTTAGCCTACCCGAGTTGTTTTTCC
G Coding sequence (CDS) from alignment at scaffold_197:115313..116763- >TCONS_00051121 ID=TCONS_00051121|Name=TCONS_00051121|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_197:115313..116763- (Clytia hemisphaerica)
ATGCTTTGAAGCAAAAATACCCCGTCGACCTTGACCGAATGATAGGGGAT
GTCAGGGGCGGTGCGACACCCCTGCAAAACATGCACTCGCAGGGTATGCT
CCAGAGTCTTTTTTTGTCGCAGCTTGTTTTTAGCCTACCCGAGTTGTTTT
TCATGCTGAAACATTTAGTGGCTGGGAAGGCTGCGAGAAGAGCAGTGTTA
ATTTCGCTCGATGCTCTAATGTCGCGTGGGCTACAATCCAAATTTTCAAA
GGCTGGGAAGGCGGGGAAGAAAAGTTTCAAGGAGACGAAACATTGCAAAT
GTATAATTGATGCTTTGAAGCAAAAATACCCCGTCGACCTTGACCGAATG
ATAGGGGATGTCAGGGGCGGTGCGACACCCCTGCAAAACATGCACTCGCA
GGGTATGCTCCAGAGTCTTTTTTTGTCGCAGCTTGTTTTTAGCCTACCCG
AGTTGTTTTTCATGCTGAAACATTTAGTGGCTGGGAAGGCTGCGAGAAGA
GCAGTGTTAATTTCGCTCGATGCTCTAATGTCGCGTGGGCTACAATCCAA
ATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAGTTTCAAGGAGACGAAAC
ATTGCAAATGTATAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051121-exon-scaffold_197-1575043694:116529..116763 | TCONS_00051121-exon-scaffold_197-1575043694:116529..116763 | Clytia hemisphaerica | exon |
| TCONS_00051121-exon-scaffold_197-1575043694:115313..115466 | TCONS_00051121-exon-scaffold_197-1575043694:115313..115466 | Clytia hemisphaerica | exon |
| TCONS_00051121-exon-scaffold_197-1510915933:116529..116763 | TCONS_00051121-exon-scaffold_197-1510915933:116529..116763 | Clytia hemisphaerica | exon |
| TCONS_00051121-exon-scaffold_197-1510915933:115313..115466 | TCONS_00051121-exon-scaffold_197-1510915933:115313..115466 | Clytia hemisphaerica | exon |
| TCONS_00051121-exon-scaffold_197-1491911889:116529..116763 | TCONS_00051121-exon-scaffold_197-1491911889:116529..116763 | Clytia hemisphaerica | exon |
| TCONS_00051121-exon-scaffold_197-1491911889:115313..115466 | TCONS_00051121-exon-scaffold_197-1491911889:115313..115466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_197 | supercontig | scaffold_197:115313..116763 - |
Blast
The following BLAST results are available for this feature:
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