TCONS_00051122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051122
Unique NameTCONS_00051122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051122 ID=TCONS_00051122|Name=TCONS_00051122|organism=Clytia hemisphaerica|type=transcript|length=658bp
GTTTATCAAAACATAAGTTTTCTGAGATTAATGAGGAGGATTTAGACATC
TTGATAAGACTTGTTGAAGAATTCCCTCATTGTGGAGAGGTAATGCTAAG
AGAATTATTAAAGGAAAGAAGCATCAAAATTACCAGACAAACTTTGCGAG
ACAGCTTGAACCGGATTGACGAAAATGGTAGTCTAAAGATGAGGAAGAAA
AAGAGTTTACACCGTAGAGTTTACAGTGTACAGGGACCAAATCATTTGTG
GCATCTGGATACAAACCATAAACTTGTAAGGTGGAATTTTATCATAACTG
GTATAGTTGACGGTTTTAGTCGTTTACCTGTAGGTTTGTATTGCACCAAT
AACAACAAGGCTTTAACTATTTTGAGTTGCTTTCAAGCTTCTGTTGAAGA
GTATGGTTTGCCCAGCAGAGTGCGTGCGGACAAAgggaaagaaaatgttt
tggtGGCTGATTATATGATCGAGAGAAGAGGGGTTGGTAGGAAAAGTATG
ATTACTGGAAAGAGTACTCATAATCAGAGAGTTGAAAGATTGTGGCGCGA
TGTGTATACTGGTGTTCTCTCTTATTTTTCTAACATTTTCACTTACTTAG
AGGATCAAGATGTCTTAGATTCAACTAATATCCTGCATCTCACTGCATTA
CATCATNN
Run BLAST on NCBI

protein sequence of TCONS_00051122-protein

>TCONS_00051122-protein ID=TCONS_00051122-protein|Name=TCONS_00051122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
LSKHKFSEINEEDLDILIRLVEEFPHCGEVMLRELLKERSIKITRQTLRD
SLNRIDENGSLKMRKKKSLHRRVYSVQGPNHLWHLDTNHKLVRWNFIITG
IVDGFSRLPVGLYCTNNNKALTILSCFQASVEEYGLPSRVRADKGKENVL
VADYMIERRGVGRKSMITGKSTHNQRVERLWRDVYTGVLSYFSNIFTYLE
DQDVLDSTNILHLTALHH
Run BLAST on NCBI

transcript from alignment at scaffold_197:1981..2638

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051122 ID=TCONS_00051122|Name=TCONS_00051122|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at scaffold_197:1981..2638 (Clytia hemisphaerica)
NNATGATGTAATGCAGTGAGATGCAGGATATTAGTTGAATCTAAGACATC
TTGATCCTCTAAGTAAGTGAAAATGTTAGAAAAATAAGAGAGAACACCAG
TATACACATCGCGCCACAATCTTTCAACTCTCTGATTATGAGTACTCTTT
CCAGTAATCATACTTTTCCTACCAACCCCTCTTCTCTCGATCATATAATC
AGCCaccaaaacattttctttcccTTTGTCCGCACGCACTCTGCTGGGCA
AACCATACTCTTCAACAGAAGCTTGAAAGCAACTCAAAATAGTTAAAGCC
TTGTTGTTATTGGTGCAATACAAACCTACAGGTAAACGACTAAAACCGTC
AACTATACCAGTTATGATAAAATTCCACCTTACAAGTTTATGGTTTGTAT
CCAGATGCCACAAATGATTTGGTCCCTGTACACTGTAAACTCTACGGTGT
AAACTCTTTTTCTTCCTCATCTTTAGACTACCATTTTCGTCAATCCGGTT
CAAGCTGTCTCGCAAAGTTTGTCTGGTAATTTTGATGCTTCTTTCCTTTA
ATAATTCTCTTAGCATTACCTCTCCACAATGAGGGAATTCTTCAACAAGT
CTTATCAAGATGTCTAAATCCTCCTCATTAATCTCAGAAAACTTATGTTT
TGATAAAC

Coding sequence (CDS) from alignment at scaffold_197:1981..2638

>TCONS_00051122 ID=TCONS_00051122|Name=TCONS_00051122|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_197:1981..2638 (Clytia hemisphaerica)
ATGATGTAATGCAGTGAGATGCAGGATATTAGTTGAATCTAAGACATCTT
GATCCTCTAAGTAAGTGAAAATGTTAGAAAAATAAGAGAGAACACCAGTA
TACACATCGCGCCACAATCTTTCAACTCTCTGATTATGAGTACTCTTTCC
AGTAATCATACTTTTCCTACCAACCCCTCTTCTCTCGATCATATAATCAG
CCaccaaaacattttctttcccTTTGTCCGCACGCACTCTGCTGGGCAAA
CCATACTCTTCAACAGAAGCTTGAAAGCAACTCAAAATAGTTAAAGCCTT
GTTGTTATTGGTGCAATACAAACCTACAGGTAAACGACTAAAACCGTCAA
CTATACCAGTTATGATAAAATTCCACCTTACAAGTTTATGGTTTGTATCC
AGATGCCACAAATGATTTGGTCCCTGTACACTGTAAACTCTACGGTGTAA
ACTCTTTTTCTTCCTCATCTTTAGACTACCATTTTCGTCAATCCGGTTCA
AGCTGTCTCGCAAAGTTTGTCTGGTAATTTTGATGCTTCTTTCCTTTAAT
AATTCTCTTAGCATTACCTCTCCACAATGAGGGAATTCTTCAACAAGTCT
TATCAAGATGTCTAAATCCTCCTCATTAATCTCAGAAAACTTATGTTTTG
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032409XLOC_032409Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051122-proteinTCONS_00051122-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051122-exon-scaffold_197-1491911889:1981..2638TCONS_00051122-exon-scaffold_197-1491911889:1981..2638Clytia hemisphaericaexon
TCONS_00051122-exon-scaffold_197-1510915933:1981..2638TCONS_00051122-exon-scaffold_197-1510915933:1981..2638Clytia hemisphaericaexon
TCONS_00051122-exon-scaffold_197-1575043694:1981..2638TCONS_00051122-exon-scaffold_197-1575043694:1981..2638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:1981..2638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36945	3.21832	3.44344	2.29938	23.6358	17.9321	12.523	12.0812	3.48189	6.41223	7.80136	4.19351	4.08001	4.05745	2.39489	4.6409	4.51886	5.82165	6.00676	3.88889	3.81247	5.17441	2.84079	3.56493	15.0384	11.887	12.3787	7.28031	5.39276	6.12548
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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