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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051125 ID=TCONS_00051125|Name=TCONS_00051125|organism=Clytia hemisphaerica|type=transcript|length=805bp
AAACTGTTCTTGATTAAGGTTCCAATTCTGACAGGCATACACAAGACGAC
TTcgaacaaaacaattcaaaaacaaaactctCGTTTTCAGCTTTTaatga
aagttttgtaaaagatttgacatttgtgaaaattttgcaGATGCTAATTG
AATACGGTGAGTGATCTCCTTTTCACCAGTATAAGGCTGATTCGAATTGA
GATAAGCACCaagatatttaaaatctgacaCATTTGACAGTTGACTTTCG
CCGAGATCAATAATTGAGGATGGGTCGCGTATCTCATCTGGATGGTTGAG
TATCATCGTTTCGGTTTTTTGAGAGTTAATGGATAAACCAAATTTTGTAA
AGACTTCATTAAGCAGAACAGTAGCGCTCTGGAGACCAGTTTTTGATTGT
AGAAATAAAACTAAGTCATCAGCATAGCCACACCAAGGTAACAACGATGT
TCCTGATGAACTCGAGCCTTTCTCGCGCATTATCACCCTTTCATTTCTTG
AGATTGAATGACTATTTATGTGATACTTGTGGACAAAGAACTGGATTAAT
GGATCGTTACGGCTTTTCTCGATCATCAGGCTCATAACAAAGTCTATGTA
CAGATTGAAGAGAAAAGGGCTTTCTGGGCCACCCTGACGAACACCGGATG
TGGTTGCGAAAACTTTTCCCTCGTATAATAGAGATGTATGATGAtacaat
ttttcaagaattctGAGCAATATCGGAGATTGACTGTTGCGAAATCGTAA
GCTTATTGAATCAAATAACCATTTACGTGGGATATGATCGAACGCAGCAG
ACAAG Run BLAST on NCBI protein sequence of TCONS_00051125-protein >TCONS_00051125-protein ID=TCONS_00051125-protein|Name=TCONS_00051125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
LSAAFDHIPRKWLFDSISLRFRNSQSPILLRILEKLYHHTSLLYEGKVFA
TTSGVRQGGPESPFLFNLYIDFVMSLMIEKSRNDPLIQFFVHKYHINSHS
ISRNERVIMREKGSSSSGTSLLPWCGYADDLVLFLQSKTGLQSATVLLNE
VFTKFGLSINSQKTETMILNHPDEIRDPSSIIDLGESQLSNVSDFKYLGA
YLNSNQPYTGEKEITHRIQLASAKFSQMSNLLQNFH Run BLAST on NCBI transcript from alignment at scaffold_197:6320..7124 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051125 ID=TCONS_00051125|Name=TCONS_00051125|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at scaffold_197:6320..7124 (Clytia hemisphaerica)
CTTGTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCAA
TAAGCTTACGATTTCGCAACAGTCAATCTCCGATATTGCTCagaattctt
gaaaaattgtaTCATCATACATCTCTATTATACGAGGGAAAAGTTTTCGC
AACCACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTCA
ATCTGTACATAGACTTTGTTATGAGCCTGATGATCGAGAAAAGCCGTAAC
GATCCATTAATCCAGTTCTTTGTCCACAAGTATCACATAAATAGTCATTC
AATCTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTCGAGTTCAT
CAGGAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTTA
TTTCTACAATCAAAAACTGGTCTCCAGAGCGCTACTGTTCTGCTTAATGA
AGTCTTTACAAAATTTGGTTTATCCATTAACTCTCAAAAAACCGAAACGA
TGATACTCAACCATCCAGATGAGATACGCGACCCATCCTCAATTATTGAT
CTCGGCGAAAGTCAACTGTCAAATGtgtcagattttaaatatcttGGTGC
TTATCTCAATTCGAATCAGCCTTATACTGGTGAAAAGGAGATCACTCACC
GTATTCAATTAGCATCtgcaaaattttcacaaatgtcaaatcttttacaa
aactttcattAAAAGCTGAAAACGagagttttgtttttgaattgttttgt
tcgAAGTCGTCTTGTGTATGCCTGTCAGAATTGGAACCTTAATCAAGAAC
AGTTT Coding sequence (CDS) from alignment at scaffold_197:6320..7124 >TCONS_00051125 ID=TCONS_00051125|Name=TCONS_00051125|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_197:6320..7124 (Clytia hemisphaerica)
TTGTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCAAT
AAGCTTACGATTTCGCAACAGTCAATCTCCGATATTGCTCagaattcttg
aaaaattgtaTCATCATACATCTCTATTATACGAGGGAAAAGTTTTCGCA
ACCACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTCAA
TCTGTACATAGACTTTGTTATGAGCCTGATGATCGAGAAAAGCCGTAACG
ATCCATTAATCCAGTTCTTTGTCCACAAGTATCACATAAATAGTCATTCA
ATCTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTCGAGTTCATC
AGGAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTTAT
TTCTACAATCAAAAACTGGTCTCCAGAGCGCTACTGTTCTGCTTAATGAA
GTCTTTACAAAATTTGGTTTATCCATTAACTCTCAAAAAACCGAAACGAT
GATACTCAACCATCCAGATGAGATACGCGACCCATCCTCAATTATTGATC
TCGGCGAAAGTCAACTGTCAAATGtgtcagattttaaatatcttGGTGCT
TATCTCAATTCGAATCAGCCTTATACTGGTGAAAAGGAGATCACTCACCG
TATTCAATTAGCATCtgcaaaattttcacaaatgtcaaatcttttacaaa
actttcattAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051125-exon-scaffold_197-1491911889:6320..7124 | TCONS_00051125-exon-scaffold_197-1491911889:6320..7124 | Clytia hemisphaerica | exon |
| TCONS_00051125-exon-scaffold_197-1510915933:6320..7124 | TCONS_00051125-exon-scaffold_197-1510915933:6320..7124 | Clytia hemisphaerica | exon |
| TCONS_00051125-exon-scaffold_197-1575043694:6320..7124 | TCONS_00051125-exon-scaffold_197-1575043694:6320..7124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_197 | supercontig | scaffold_197:6320..7124 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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