TCONS_00051161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051161
Unique NameTCONS_00051161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051161 ID=TCONS_00051161|Name=TCONS_00051161|organism=Clytia hemisphaerica|type=transcript|length=722bp
AAAAGATACCCCTCCATTTGTTCAATTAGTGTCCAAAGTCGAAATTCACG
CTAAGTGGGTTATCACGCCAACTAAGTACCACACTTTATGTTAGAGACAC
ATTTTCAATATAATATGTTGCCGGCACTCAgtaatatattgcctgacaca
AAATATagcgtagtgtatgtagccctttaagGTGATACCGGGTTAGTCAG
AAATAAGTtacatgtttttgttttttgtattttttagtaTGGGCTGAGCC
TGCATGTgattatttttttgacaattccgagtctaaaatgttcttattgg
cGTCCTTCTAATTAATTCACTTACACGCTTTGTTTATAAGAATGgcgttt
ttccatttcatcatttcTNCTAATTAATTCACTTACACGCTTTGTTTATA
AGAATGgcgtttttccatttcatcatttcttaaattttaagaGGAAATTC
TTAGGCTAGAATCAAGATTCAACCATAGAGATTCAACCTAGATTTATCAA
GAAATACACACCTGTGGAGCATAAAATTGCACTTTTGTGAAATAATTGAG
CCTAACTGGGGGATAATTagcaatttacagttaaaaaatgCTCTATAAAT
GgcattcttaggtttcGCTGCCAAATTCtgtgatggtgatattcttaatt
tttcggtcATTTCcatcatgaacattcttataaagtcttataaaataaaa
aagctgcGCTGCGGTCGTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_199:156121..156842

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051161 ID=TCONS_00051161|Name=TCONS_00051161|organism=Clytia hemisphaerica|type=transcript|length=722bp|location=Sequence derived from alignment at scaffold_199:156121..156842 (Clytia hemisphaerica)
AAAAACGACCGCAGCgcagcttttttattttataagactttataagaatg
ttcatgatgGAAATgaccgaaaaattaagaatatcaccatcacaGAATTT
GGCAGCgaaacctaagaatgcCATTTATAGAGcattttttaactgtaaat
tgctAATTATCCCCCAGTTAGGCTCAATTATTTCACAAAAGTGCAATTTT
ATGCTCCACAGGTGTGTATTTCTTGATAAATCTAGGTTGAATCTCTATGG
TTGAATCTTGATTCTAGCCTAAGAATTTCCtcttaaaatttaagaaatga
tgaaatggaaaaacgcCATTCTTATAAACAAAGCGTGTAAGTGAATTAAT
TAGNAgaaatgatgaaatggaaaaacgcCATTCTTATAAACAAAGCGTGT
AAGTGAATTAATTAGAAGGACgccaataagaacattttagactcggaatt
gtcaaaaaaataatcACATGCAGGCTCAGCCCAtactaaaaaatacaaaa
aacaaaaacatgtaACTTATTTCTGACTAACCCGGTATCACcttaaaggg
ctacatacactacgctATATTTtgtgtcaggcaatatattacTGAGTGCC
GGCAACATATTATATTGAAAATGTGTCTCTAACATAAAGTGTGGTACTTA
GTTGGCGTGATAACCCACTTAGCGTGAATTTCGACTTTGGACACTAATTG
AACAAATGGAGGGGTATCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032429XLOC_032429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051161-exon-scaffold_199-1491911889:156121..156842TCONS_00051161-exon-scaffold_199-1491911889:156121..156842Clytia hemisphaericaexon
TCONS_00051161-exon-scaffold_199-1510915933:156121..156842TCONS_00051161-exon-scaffold_199-1510915933:156121..156842Clytia hemisphaericaexon
TCONS_00051161-exon-scaffold_199-1575043694:156121..156842TCONS_00051161-exon-scaffold_199-1575043694:156121..156842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_199supercontigscaffold_199:156121..156842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0691574	0	0.626428	0.612862	0	0	0	0.083239	0	0	0	0	0.183978	0.0955313	0.0392699	0	0	0	1.3968	0.76929	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top