TCONS_00051178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051178
Unique NameTCONS_00051178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051178 ID=TCONS_00051178|Name=TCONS_00051178|organism=Clytia hemisphaerica|type=transcript|length=323bp
GAGCACTATTAATGTCGTTAATTGTtgtaaaaaaatgtcttgagaATATC
AAAGCTTGATTCGAAGACTATAaaagtcaaaagtaaagttAACATAGTAC
ATACTTTCAAGAGGGTGAGAAATCTATACAAGAGACGTTTAGGCgaagaa
tctctaaccttttcaACAAAATGGAAAAACTTTTCGTAATGGCTATTTTG
CTTATTGCAGTGATTTCTACCTCAGATGCGAAGGCTATCAGCGATAAAGA
TTTACTGGACGCATTAAACGACTTTCTGCATAGAGACgcccaaggaccca
agtcgttcgtccaaggtggagac
Run BLAST on NCBI

transcript from alignment at scaffold_2:468182..470267+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051178 ID=TCONS_00051178|Name=TCONS_00051178|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at scaffold_2:468182..470267+ (Clytia hemisphaerica)
GAGCACTATTAATGTCGTTAATTGTtgtaaaaaaatgtcttgagaATATC
AAAGCTTGATTCGAAGACTATAaaagtcaaaagtaaagttAACATAGTAC
ATACTTTCAAGAGGGTGAGAAATCTATACAAGAGACGTTTAGGCgaagaa
tctctaaccttttcaACAAAATGGAAAAACTTTTCGTAATGGCTATTTTG
CTTATTGCAGTGATTTCTACCTCAGATGCGAAGGCTATCAGCGATAAAGA
TTTACGTAAGTTGAAAAACTTTTCAGTTCTTTACTCTTTCACTCTATGTG
ACATTCTCaaactttaaaactttttaaacctGGCTATGATAGCTCTTTTC
AGTAAGTTATAGCCGAAGGCTATTAGATCTGTATCTTCTAATTAAGATTT
GAAGCCACTTAAATATTATTCAAAGCCCGAAAGGCTTAGAGAGGAATCTT
GAAACTCCCATaagcaagaaaaaatgaagcccTAAGATTTGCGCCACTTT
AGCAATGACTGATTGAATCTAGTACTGTCTTAGTTTTCATGCAGCGAATT
TTTCTATTTCTCCCCTTTTTAAATCTTAGACTAAAAAAGATTAAGGTCAT
TAAGAAGTTTAAGCAGTCCCAAGTGAACTCTAGGGAACGTGTTTGTGAAA
ACTATGTTATAGTTTACTTTAATTCTCGAGTAATACTCTGcgatttctat
ttttttcttacAGTGGACGCATTAAACGACTTTCTGCATAGAGACAtcca
aggacccaagtcgttcgtccaaggtggagacgctCAAGGACNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGTTCGGccaaggtggagac
gcccaaggacccaagtcgttcgtccaaggtggagac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032440XLOC_032440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051178-exon-scaffold_2-1491911889:468182..468436TCONS_00051178-exon-scaffold_2-1491911889:468182..468436Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1510915933:468182..468436TCONS_00051178-exon-scaffold_2-1510915933:468182..468436Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1575043694:468182..468436TCONS_00051178-exon-scaffold_2-1575043694:468182..468436Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1491911889:468895..468926TCONS_00051178-exon-scaffold_2-1491911889:468895..468926Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1510915933:468895..468926TCONS_00051178-exon-scaffold_2-1510915933:468895..468926Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1575043694:468895..468926TCONS_00051178-exon-scaffold_2-1575043694:468895..468926Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1491911889:470232..470267TCONS_00051178-exon-scaffold_2-1491911889:470232..470267Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1510915933:470232..470267TCONS_00051178-exon-scaffold_2-1510915933:470232..470267Clytia hemisphaericaexon
TCONS_00051178-exon-scaffold_2-1575043694:470232..470267TCONS_00051178-exon-scaffold_2-1575043694:470232..470267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:468182..470267 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.89359e-05	0	0	0.995934	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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