TCONS_00051215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051215
Unique NameTCONS_00051215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051215 ID=TCONS_00051215|Name=TCONS_00051215|organism=Clytia hemisphaerica|type=transcript|length=1658bp
CTCAAACTAAAGTAGGATCAAAAGGGCGGCCTTAGTAGCGGTAAGCGGGA
AACAAAACAAATCGGTGTTTTGATcggaaatttcgaaattttgttggtaa
tttttatctgattttgtgCACATTCAACCTGCAAATTTCCTGACGTTCAA
ATCGATATTTTTTAGAATGGCATCTGCATATCGAAAAGGGGCCTTGatga
ataaaaagaaagGACCTAAACCAGAGCTGACAGAAGAACAAAAACAAGAG
ATTCGAGAAGCATTTGATTTGTTTGATTCTGATGGTTCAGGAACTATTGA
TGCCAAAGAGTTGAAGGTAGCAATGAGAGCATTAGGATTCGATCCCAAGA
AAGAGGAGATTAAAAAGATGATATCAGACATTGATAAGGATGGATCAGGC
ACTATTGACTTCAATGAATTCCTTGTCATGATGACCTctaaaatgAGTGA
AAAAGATTCGAAAGAAGAAATCTTGAAAGCTTTCAGATTGTTTGATGACG
ATAACACTGGACGAATTTCGTTCAAGAATTTGAAAAGGGTAGCAAAAGAA
TTAGGTGAAAATTTAACGGATGAAGAACTACAGGAAATGATCGACGAAGC
GGATCGAGACGGAGATGgtgaaataaacgaaaatgaattTCTTCGTGTCA
TGAAGAAAACGTCGTTATATTGATAGTGAACATGTTGTAGTGACGAAGGG
GATAAAATAGGCTAGTTTAATAATATATTGTATAtcaatagtgtagatag
tgtaatATTTATGGCCTAGAGAATTAGCGAGTATAAACAATCTAGATAAA
GATATTGTTAATAATGAAATTCCAAGTCATCATTAAAGGTCATCCACACA
AAATCAATCTTCGAAGTATGTTGGTTAACAATACTCGACAAAATGGTTTA
CGGACCGTAATGTActaagaaaacaattttttgtcatATTATGAATAAAT
TTCCTTCTGTAAACGATTTTCCTTTATTGTTCGGAATATTGCAAATGAGA
CTGGCAATATATTGAGGACACCCTATCAATATAATGTGATCACTTTTCAA
TTTGCCGTCACTCACAAATATATTAAGGACCTTTAGCATCTAGGACGGCG
ACTTCAATGAGGACGTAAAGTAAATCTTGAAATCAAATAGcaaattttat
tcaattttacatATATTTAATATCATATGGACAAAGCTTAATTCAGTCAA
GATTATGTAAAATAATACCTAGCTGCGATCCTTATATCAATCCCCCTAAG
GAATTTCTTTCTGTACAATCTTGCCGTTATTAGATGCTAAAAGTCCCTAT
TGTGTAGTGTATAGTAGCTCTTATTAAGTGCTTCAGGCTTCAGGCTATGG
TTGAGTATATGGTTAGTTTCTCGTCATCGACAGGGTTGaatacattttgt
tttgttttttattttttattttcactacAGAATGTTCTTTTTAAcgataa
atttatcaaaaaatatgatggtatagatttgtaaatattttttaagtttc
cagtaatcagaaaaattttggtttgttttcaaattgagaaagacatttat
ttttaaacatattttttgTTCTGTCCAGATTTGATATTGAGCAGATGTTC
TATGTTCTGCTAGTCTGATAACATTTTTCTGTTGAATTTTCAAATCGTTT
AATTCaaa
Run BLAST on NCBI

protein sequence of TCONS_00051215-protein

>TCONS_00051215-protein ID=TCONS_00051215-protein|Name=TCONS_00051215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MASAYRKGALMNKKKGPKPELTEEQKQEIREAFDLFDSDGSGTIDAKELK
VAMRALGFDPKKEEIKKMISDIDKDGSGTIDFNEFLVMMTSKMSEKDSKE
EILKAFRLFDDDNTGRISFKNLKRVAKELGENLTDEELQEMIDEADRDGD
GEINENEFLRVMKKTSLY
Run BLAST on NCBI

transcript from alignment at scaffold_20:101238..109931+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051215 ID=TCONS_00051215|Name=TCONS_00051215|organism=Clytia hemisphaerica|type=transcript|length=8694bp|location=Sequence derived from alignment at scaffold_20:101238..109931+ (Clytia hemisphaerica)
CTCAAACTAAAGTAGGATCAAAAGGGCGGCCTTAGTAGCGGTAAGCGGGA
AACAAAACAAATCGGTGTTTTGATcggaaatttcgaaattttgttggtaa
tttttatctgattttgtgCACATTCAACCTGCAAATTTCCTGACGTTCAA
ATCGATATTTTTTAGAATGGTAAGCTTATTCATATTTttactagccgtat
tgtataagggttgcgaagcgatctagactccacctcaattcgcaagttgc
tagcaaaataagagactctctaaaaatccctcttctaataaagccgctat
agagacagggtcgtgtaagagccttaatgctcccaaacacattacataat
ccacggcggcacaacacccgccgctgcccgcgcatcgctcttttgttttc
cttctagttattctagtgtaaatggtgccttaatataATCGAACGATATg
cgtcgaacgatcgaacatttttattcgaatcacgaatcgtccgtcgaaat
catcacaaaacataaaaataaaacaaaaacaaaaatgtacaaagatggct
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCT
Tattttttgatacttgatacttgctgttaaaagtcaagggatgatgaaga
tcctttctgtcaccgttcaaactatttttttttcatttaacagcaaaata
aacattaaaaaccgaagaaccactgcttagattgcttagatgtgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNttatatagcaaattttatagcaaatttt
cgcttgggatagaagttaaaggtacgtgcacaatatagcaaaactgcttc
gctcataaattcgcttcgcaataataTCTTGTTATGCTCAAAACTAGTCG
TACTTTTTTATAAgggttgaaatttttcaaaatgttgtggCCCAAACTTT
GCAACACATCCATCCTCACACTtaagagtcccctgcccagttggcgaccg
gtctagttggcgaccgaatgtctttgaacccagaaaagtcatacaaaaac
aaacctctgaagaatttcttttgatagttatctgccttgacctattaccc
gtagagtcccctgcccagttggtgACCGGTCTAGttagttggcgaccgaa
cgtctttgaacccagaaaagtcatacaaaaacaaacctctgaagaatttc
ttttggtagttaccgtaacttggtctaatgtcgacacccctcctctaatt
ccaacaccctttttatcagctgaaatttatagaaaggttgaaactatttt
tctttgctttatagtggtcagagaggaataatcctttttcaatcattgat
tcaagctttcatattattcctttctttaaagaagggtgtcagaattagac
gagggatgtcgatattagaccaacttacggtatctgccttgacctatttc
cagtacgtactgtgtaaaaaaagttCCAGAAAAGAACaagtagaatccga
aagatctTTGTGCACGACACGGAAGCACAAGAAAAAACCAACTACCTgtg
gaaaaaaattagatttgattTTGGGGGTGCTAGAAAAATATGTCCCATCC
GAAATCActtgtcccgtccgaaatcataaattttatatcTCTTTTAGCTT
AAAGCCGGTTGATTTATTTTCCTTCCATAGAGTGTCCGGGGGCAAGTTTA
TGGTAAAAAAGAAGCTCTTGATTTATAATAAGTCTAAGTAAATGCATATA
TCTAGGCCTTAAAAGGTGATGTCAAGGTACATTTCCATGAAATATAGGCT
ATAGACTTTCATAAAAAAGCAGAGtgatgtttaaaaaattaactttattt
ttcatgatttcggacgggacacggTACAGATTCAGCGCAAATCGCccgac
catagatttataaagcctgaagggctagatggcgtgctttaagcttttcc
aagcaaaaaaaagtgaatatcgcaaaaaatattgctgccattgttttcga
aaacctgcaaGGCTTctgatttcctacctaacctcggcacacttttcagc
aaaagcaatctatctagcccttcgggctttataaatataTGGCCACGACC
ACAATGTGGACCCTCCTTGTCTTTCAGTCgttttgatttcttctttgatt
tttttattatggTCGGATAAATCATGTGAAACAGTCACGAAAGACACCGC
CTTAAACGCCCCCGtaatatatttttgaataattttttcaaaaagatagt
ATCACTTTAACAAAGATTTCACATAATTAGCATAGCGAGCGCTATCGTAA
TTATATCGCGGATATCTTGCTCCAAAACCGGAAGACCGGAAGTACAATGG
AATCTTCTGAGGTTCCGGAGCTTGAAAAAAACGACACGGGTGTTTCCGGA
GCGTCGGGAGGGTCCTGTAGCTAGTGACTCCAAAGTCACGCAACTTTTGC
TGGCACCAAatcaaatgtttcattttttggTAAACTTTGACAGTCTAATA
AGCTTAATATCGGGATtggaaactaggctagtcttacctcttttatcttt
cccttaacaacaatacaatgctgacaaaagttgacaacacattgacaagt
aatccctgagagaagtttatatctaaatctgtaacaaaaacaaaagtggt
ctcgCCTACTGATCAGCTAGTGGAAGCACCTCAAttttaagcatgttcaa
agttcacaataaaacgactttctttttatgAGAGAGAGAGTAATGAGAGA
GTAATCCGTCCCATGCAGTGGGAATCGGcctagaaaaatatataaaaaaa
tatatatatataatccCTAGGAAATCATTGCGCTATGgttgacaaataaa
aaaaaattaaaaaaaaaagaaaaaaaaagaacaatattaTATACCAGAAA
GACTAGANGGAATCGGcctagaaaaatatataaaaaaacataggTATATA
TAATCCCTAGGAAATCATTGCGCTATGgttgacaaataaaaaaaaaagaa
taccaTTATATACCAGAAAGATTAGAAGTCCAGATCACAAAGCATACAAT
TCCACCATAATTTATCATTAGCCAGATCAAACCAATTATCATTGGGAACA
TTAGCCTTTTCAAAGATTTAAACAGACCCCTTCCATATGTAAATTTTGGG
GCACCTTTTGGACGTTTAGATACAACCCAACAAGAAAGCATTTTGCGTGG
CAAACGATCAAAGCTCATTCTTGCAACATGGCCAGCCCATGCCAATTGGC
GTCGAGTGATATAACAATCAATAGATTTTAAACCAAGTCTCTCAAGTAAA
CTTTCTGTAGATATTCTGTGTTTTCGAACATGTAACATGTTTGCGCGAGA
CATTGCTCGTACGCATCTACGATGAAATAATCTCaataaatcaaacaatc
tttcgGTAAGACTCCATGTTTCCGAGCcgtataaaacaatagaaagaata
AGAGTCTCATATACGACTGCCTTAACTTTTGGTGAGACACGAGAATTAGC
AAAAATACACGATCTAAGGGCGCCAAAAGCATTACTTCCACGATTTAATC
TTGATACAACATCAATCTCGTCATCTGTGTCTCTCGATAAGAACGAACCG
AGGTAGCAAAAACTATCTGTGACAGGGATAAATTTTCCATCTCCAAACTT
TATGGGATCTAGGTTTGGTGGGTCAACATTTGGGTTCGGCCCAGAGACAT
GTAGAATCTCTGTTTTTGAGGGTTTTTCTGGTTGCGAATCGTCTCCAGCG
TGGACCTCCATTACAAAGGATAAGAAGTGATTAAATAGAGGAGGGATGTA
AATTTCTACGTCTTGTCTCGACGTAAATAAAGCGGCAGTGTCATCTGCAT
ATTTTGAATCTGGTACGGCAAAATCAGTCCCTNTATATCCCAAAGGATAA
GAAGTGATTAAATAGAGGAGGGATGTAAATTTCTACGTCTTGTCTCGACG
TAAATAAAGCGGCAGTGTCATCTGCATATTTTGAATCTGGTACGGCAAAA
TCAGTCCCTTTGGCATTGTATCTCCTACCGGTCATGCGAAAGTCATTTTT
TGTACGAAAGATGCACAAGGGTCGATCATAACGCTTACGCCATGTGATCA
TAATGGCTGCAATATACATAACGAATAGCACGGGACCTAaaatgtcttct
ttttattacggaaaccaaacgagtgttaagataaaatgacatatactttt
taacaactttttctacgtcatttttttgaagcctcttcgtaggagaatgt
gtcatggcagattaaaaagacaatcagaaaatgaaagcttctttgttttt
cattttcgtatttatggggaagaatgaaacttttagaagatgctttattc
gatatgaggattcccatttccgtaaaATCACGATTTCCCATGATGGACAC
TATTTTTGTTTGTTACAAACAGagtggaaaaaatcttttgtctatcagtg
cTCCCGAGGTTACCTATTTAATTTGTCTTTGAAATTAATTAGATTATAAT
TAGTTTTTAGTGTTTGTACAGCAGTGTTTTTTTGCAGTCCAACATAGGTT
GAGTTTTTCAAACCTCAGTGTTATACCCTCTTAATTCTGCTCCACAACAA
CTGAAAAAACCTTCTATAAAAGCTTAACATTGAttgcttttgattttgat
attcttttctCTAGGCATCTGCATATCGAAAAGGGGCCTTGatgaataaa
aagaaaggtATGACCATTTTATCTAGTGCTGCAACTAGGGTATTGGCCAA
ATGCAATTAATCAAAGATTTACCGTACTTTCCTATATAACAATCCAATAG
TTCCCTTTTTAACAATCCAAAAGCATCAAAATCGTAAAAATTCAGATATT
GCTGTGGTAAAGCCACTTTTTTGCGAGTTTGGCGCTTTTGATTATTAAGG
GAACTTGGATTGTTATAGATAAGTGCGGTATTATATCTCGATCAGAATTA
TAAAACTTGCTTGTGTTACATCATTTATTGTTGCACATGTTATGTTAAAT
ATTTTATAGAAAAGCAGGTATATACAGACTCTTGACAGTTTTAGTTTTTG
GATAAACCATATGCAAAGAATGGTGTTCCTGGCTTAGAATTCTGCAAAAA
TCTGTTATTTGCTGACCACCTATGNTGCAAAGAATGGTGTTCCTGGCTTA
GAATTCTGCAAAAGTCTGTTATTTGCTGACCAcctataaaatttgaaaag
taatatATAAAAATCTTTTACAGGACCTAAACCAGAGCTGACAGAAGAAC
AAAAACAAGAGATTCGAGAAGCATTTGATTTGTTTGATTCTGATGGTTCA
GGAACTATTGATGCCAAAGAGTTGAAGGTTtgtttgattaaatttaaaat
gcGTTTGTTCTCATTGGATTTTGcagatagaaaagaaaaaaattattaaa
gaggATCTACTCAGGgattaatatttttgtttgttaaCTGTTGTTAAAAA
AGTGTAAGTCTTCATGCATACTTCTAAATGGATAATTGAAAACGACGATG
ACCCGTTCCTCACATATTTTGCTTAGTATTTTGAATCTAATCTTGAAGTC
CAGATCCTGCACGCCTGTAGAATTGCcagaaaattgcattttaaaaTACA
cttatattttctgatttttgtgtTATAGGTAGCAATGAGAGCATTAGGAT
TCGATCCCAAGAAAGAGGAGATTAAAAAGATGATATCAGACATTGATAAG
GATGGATCAGGCACTATTGACTTCAATGAATTCCTTGTCATGATGACCTc
taaaatggtatttttttgGTTAGATATTTGTACATTAAAAATCACCATTG
TACTACAAATAATTTTGCACCAGTTTGCACTCGctttttattttggtgat
tTGCCTGGCCAGTGTAGTGATAAAAAATTTGTTTACTTAAGGGAATTTAA
TTCCCTATCCTTGCAGATCCTGGATGATTTTCGAAATCTTTTTGTCCCCT
AAAAGTCAACTTTCTACTGCAGAAAGGTTTCTCTCATCCCATGAATTGAT
TTTAAATCGCCCCCATTGATCCACGAGGAAAAAACACAAGCAGACTGCTT
AAAATCAcataaaattattattaaatcTTATTTCAGAGTGAAAAAGATTC
GAAAGAAGAAATCTTGAAAGCTTTCAGATTGTTTGATGACGATAACACTG
TAAGCTTCTTTTGCCTTTACTCACCTGTCTTATCCTATCCTtgtacacct
tttcgaccgtagtcaggCGCGTgctactttattatttaatttaccaccct
aaactcgagcCAATCCTTttcttacacttttttctattgtctttaggtgc
tataaaaagactgggacggttttagggtggtaaaacgaacaaaaaaatgc
ctgcgcggtaattggcggctacggtcaaaaaggtgtattatattTTCGTA
AAGAATATTTGCAAGCTGATTACATCATATAGTccaatattatttttaaa
taaattatgAATTTGCTTCAGGGACGAATTTCGTTCAAGAATTTGAAAAG
GGTAGCAAAAGAATTAGGTGAAAATTTAACGGATGAAGAACTACAGGTAG
GCTtgataaaaagaatcaaatataCTAATGTACTGTATACGTAATGTATA
CTAAATGTCGAAGAATCGTATATTAATGAAAAGAAAGTATGAAAATAGTA
ATTTTTGTTTCCTGTAAAAACTCGCCTTGCTAGTTGTTCATTATTTTACC
ATCTAGCATTTCGAAGTTTTTTGAATGTCAGGAAGTTAGGATTCTATCTT
TGTACCctctttcattttatgcttttctTAAAATGTTATACGGCCGGTGC
TAAAATAATTTCTTGTGGATCGTATTCTGTTACTGGTGGTTATCTCTGGA
AATCACTAGATAGATAGTTTCTCGCcatcaaaacttttgaatttggaCTA
CAACTGGAGTACTACTACGCGCTAAATTTTTAGACTGCTACTTCAGTAGA
ACTAGTATTCTTACAATCaactttcttgaatttcttaCACATTATACATG
ACGTTTAAAAGGAACAAATTGCTTCCTACaattgaaagtttttattttca
atgtttttttctcctaCAGGAAATGATCGACGAAGCGGATCGAGACGGAG
ATGgtgaaataaacgaaaatgaattTCTTCGTGTCATGAAGAAAACGTCG
TTATATTGATAGTGAACATGTTGTAGTGACGAAGGGGATAAAATAGGCTA
GTTTAATAATATATTGTATAtcaatagtgtagatagtgtaatATTTATGG
CCTAGAGAATTAGCGAGTATAAACAATCTAGATAAAGATATTGTTAATAA
TGAAATTCCAAGTCATCATTAAAGGTCATCCACACAAAATCAATCTTCGA
AGTATGTTGGTTAACAATACTCGACAAAATGGTTTACGGACCGTAATGTA
ctaagaaaacaattttttgtcatATTATGAATAAATTTCCTTCTGTAAAC
GATTTTCCTTTATTGTTCGGAATATTGCAAATGAGACTGGCAATATATTG
AGGACACCCTATCAATATAATGTGATCACTTTTCAATTTGCCGTCACTCA
CAAATATATTAAGGACCTTTAGCATCTAGGACGGCGACTTCAATGAGGAC
GTAAAGTAAATCTTGAAATCAAATAGcaaattttattcaattttacatAT
ATTTAATATCATATGGACAAAGCTTAATTCAGTCAAGATTATGTAAAATA
ATACCTAGCTGCGATCCTTATATCAATCCCCCTAAGGAATTTCTTTCTGT
ACAATCTTGCCGTTATTAGATGCTAAAAGTCCCTATTGTGTAGTGTATAG
TAGCTCTTATTAAGTGCTTCAGGCTTCAGGCTATGGTTGAGTATATGGTT
AGTTTCTCGTCATCGACAGGGTTGaatacattttgttttgttttttattt
tttattttcactacAGAATGTTCTTTTTAAcgataaatttatcaaaaaat
atgatggtatagatttgtaaatattttttaagtttccagtaatcagaaaa
attttggtttgttttcaaattgagaaagacatttatttttaaacatattt
tttgTTCTGTCCAGATTTGATATTGAGCAGATGTTCTATGTTCTGCTAGT
CTGATAACATTTTTCTGTTGAATTTTCAAATCGTTTAATTCaaa

Coding sequence (CDS) from alignment at scaffold_20:101238..109931+

>TCONS_00051215 ID=TCONS_00051215|Name=TCONS_00051215|organism=Clytia hemisphaerica|type=CDS|length=3549bp|location=Sequence derived from alignment at scaffold_20:101238..109931+ (Clytia hemisphaerica)
ATGGCATCTGCATATCGAAAAGGGGCCTTGatgaataaaaagaaagGACC
TAAACCAGAGCTGACAGAAGAACAAAAACAAGAGATTCGAGAAGCATTTG
ATTTGTTTGATTCTGATGGTTCAGGAACTATTGATGCCAAAGAGTTGAAG
GTAGCAATGAGAGCATTAGGATTCGATCCCAAGAAAGAGGAGATTAAAAA
GATGATATCAGACATTGATAAGGATGGATCAGGCACTATTGACTTCAATG
AATTCCTTGTCATGATGACCTctaaaatgAGTGAAAAAGATTCGAAAGAA
GAAATCTTGAAAGCTTTCAGATTGTTTGATGACGATAACACTGGACGAAT
TTCGTTCAAGAATTTGAAAAGGGTAGCAAAAGAATTAGGTGAAAATTTAA
CGGATGAAGAACTACAGGAAATGATCGACGAAGCGGATCGAGACGGAGAT
GgtgaaataaacgaaaatgaattTCTTCGTGTCATGAAGAAAACGTCGTT
ATATTGAATGGCATCTGCATATCGAAAAGGGGCCTTGatgaataaaaaga
aagGACCTAAACCAGAGCTGACAGAAGAACAAAAACAAGAGATTCGAGAA
GCATTTGATTTGTTTGATTCTGATGGTTCAGGAACTATTGATGCCAAAGA
GTTGAAGGTAGCAATGAGAGCATTAGGATTCGATCCCAAGAAAGAGGAGA
TTAAAAAGATGATATCAGACATTGATAAGGATGGATCAGGCACTATTGAC
TTCAATGAATTCCTTGTCATGATGACCTctaaaatgAGTGAAAAAGATTC
GAAAGAAGAAATCTTGAAAGCTTTCAGATTGTTTGATGACGATAACACTG
GACGAATTTCGTTCAAGAATTTGAAAAGGGTAGCAAAAGAATTAGGTGAA
AATTTAACGGATGAAGAACTACAGGAAATGATCGACGAAGCGGATCGAGA
CGGAGATGgtgaaataaacgaaaatgaattTCTTCGTGTCATGAAGAAAA
CGTCGTTATATTGAATGGCATCTGCATATCGAAAAGGGGCCTTGatgaat
aaaaagaaagGACCTAAACCAGAGCTGACAGAAGAACAAAAACAAGAGAT
TCGAGAAGCATTTGATTTGTTTGATTCTGATGGTTCAGGAACTATTGATG
CCAAAGAGTTGAAGGTAGCAATGAGAGCATTAGGATTCGATCCCAAGAAA
GAGGAGATTAAAAAGATGATATCAGACATTGATAAGGATGGATCAGGCAC
TATTGACTTCAATGAATTCCTTGTCATGATGACCTctaaaatgAGTGAAA
AAGATTCGAAAGAAGAAATCTTGAAAGCTTTCAGATTGTTTGATGACGAT
AACACTGGACGAATTTCGTTCAAGAATTTGAAAAGGGTAGCAAAAGAATT
AGGTGAAAATTTAACGGATGAAGAACTACAGGAAATGATCGACGAAGCGG
ATCGAGACGGAGATGgtgaaataaacgaaaatgaattTCTTCGTGTCATG
AAGAAAACGTCGTTATATTGAATGGCATCTGCATATCGAAAAGGGGCCTT
GatgaataaaaagaaagGACCTAAACCAGAGCTGACAGAAGAACAAAAAC
AAGAGATTCGAGAAGCATTTGATTTGTTTGATTCTGATGGTTCAGGAACT
ATTGATGCCAAAGAGTTGAAGGTAGCAATGAGAGCATTAGGATTCGATCC
CAAGAAAGAGGAGATTAAAAAGATGATATCAGACATTGATAAGGATGGAT
CAGGCACTATTGACTTCAATGAATTCCTTGTCATGATGACCTctaaaatg
AGTGAAAAAGATTCGAAAGAAGAAATCTTGAAAGCTTTCAGATTGTTTGA
TGACGATAACACTGGACGAATTTCGTTCAAGAATTTGAAAAGGGTAGCAA
AAGAATTAGGTGAAAATTTAACGGATGAAGAACTACAGGAAATGATCGAC
GAAGCGGATCGAGACGGAGATGgtgaaataaacgaaaatgaattTCTTCG
TGTCATGAAGAAAACGTCGTTATATTGAATGGCATCTGCATATCGAAAAG
GGGCCTTGatgaataaaaagaaagGACCTAAACCAGAGCTGACAGAAGAA
CAAAAACAAGAGATTCGAGAAGCATTTGATTTGTTTGATTCTGATGGTTC
AGGAACTATTGATGCCAAAGAGTTGAAGGTAGCAATGAGAGCATTAGGAT
TCGATCCCAAGAAAGAGGAGATTAAAAAGATGATATCAGACATTGATAAG
GATGGATCAGGCACTATTGACTTCAATGAATTCCTTGTCATGATGACCTc
taaaatgAGTGAAAAAGATTCGAAAGAAGAAATCTTGAAAGCTTTCAGAT
TGTTTGATGACGATAACACTGGACGAATTTCGTTCAAGAATTTGAAAAGG
GTAGCAAAAGAATTAGGTGAAAATTTAACGGATGAAGAACTACAGGAAAT
GATCGACGAAGCGGATCGAGACGGAGATGgtgaaataaacgaaaatgaat
tTCTTCGTGTCATGAAGAAAACGTCGTTATATTGAATGGCATCTGCATAT
CGAAAAGGGGCCTTGatgaataaaaagaaagGACCTAAACCAGAGCTGAC
AGAAGAACAAAAACAAGAGATTCGAGAAGCATTTGATTTGTTTGATTCTG
ATGGTTCAGGAACTATTGATGCCAAAGAGTTGAAGGTAGCAATGAGAGCA
TTAGGATTCGATCCCAAGAAAGAGGAGATTAAAAAGATGATATCAGACAT
TGATAAGGATGGATCAGGCACTATTGACTTCAATGAATTCCTTGTCATGA
TGACCTctaaaatgAGTGAAAAAGATTCGAAAGAAGAAATCTTGAAAGCT
TTCAGATTGTTTGATGACGATAACACTGGACGAATTTCGTTCAAGAATTT
GAAAAGGGTAGCAAAAGAATTAGGTGAAAATTTAACGGATGAAGAACTAC
AGGAAATGATCGACGAAGCGGATCGAGACGGAGATGgtgaaataaacgaa
aatgaattTCTTCGTGTCATGAAGAAAACGTCGTTATATTGAATGGCATC
TGCATATCGAAAAGGGGCCTTGatgaataaaaagaaagGACCTAAACCAG
AGCTGACAGAAGAACAAAAACAAGAGATTCGAGAAGCATTTGATTTGTTT
GATTCTGATGGTTCAGGAACTATTGATGCCAAAGAGTTGAAGGTAGCAAT
GAGAGCATTAGGATTCGATCCCAAGAAAGAGGAGATTAAAAAGATGATAT
CAGACATTGATAAGGATGGATCAGGCACTATTGACTTCAATGAATTCCTT
GTCATGATGACCTctaaaatgAGTGAAAAAGATTCGAAAGAAGAAATCTT
GAAAGCTTTCAGATTGTTTGATGACGATAACACTGGACGAATTTCGTTCA
AGAATTTGAAAAGGGTAGCAAAAGAATTAGGTGAAAATTTAACGGATGAA
GAACTACAGGAAATGATCGACGAAGCGGATCGAGACGGAGATGgtgaaat
aaacgaaaatgaattTCTTCGTGTCATGAAGAAAACGTCGTTATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032464XLOC_032464Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051215-proteinTCONS_00051215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051215-exon-scaffold_20-1491911889:101238..101406TCONS_00051215-exon-scaffold_20-1491911889:101238..101406Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:101238..101406TCONS_00051215-exon-scaffold_20-1510915933:101238..101406Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:101238..101406TCONS_00051215-exon-scaffold_20-1575043694:101238..101406Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:106452..106494TCONS_00051215-exon-scaffold_20-1491911889:106452..106494Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:106452..106494TCONS_00051215-exon-scaffold_20-1510915933:106452..106494Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:106452..106494TCONS_00051215-exon-scaffold_20-1575043694:106452..106494Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:107011..107114TCONS_00051215-exon-scaffold_20-1491911889:107011..107114Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:107011..107114TCONS_00051215-exon-scaffold_20-1510915933:107011..107114Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:107011..107114TCONS_00051215-exon-scaffold_20-1575043694:107011..107114Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:107416..107544TCONS_00051215-exon-scaffold_20-1491911889:107416..107544Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:107416..107544TCONS_00051215-exon-scaffold_20-1510915933:107416..107544Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:107416..107544TCONS_00051215-exon-scaffold_20-1575043694:107416..107544Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:107874..107936TCONS_00051215-exon-scaffold_20-1491911889:107874..107936Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:107874..107936TCONS_00051215-exon-scaffold_20-1510915933:107874..107936Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:107874..107936TCONS_00051215-exon-scaffold_20-1575043694:107874..107936Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:108259..108333TCONS_00051215-exon-scaffold_20-1491911889:108259..108333Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:108259..108333TCONS_00051215-exon-scaffold_20-1510915933:108259..108333Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:108259..108333TCONS_00051215-exon-scaffold_20-1575043694:108259..108333Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1491911889:108857..109931TCONS_00051215-exon-scaffold_20-1491911889:108857..109931Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1510915933:108857..109931TCONS_00051215-exon-scaffold_20-1510915933:108857..109931Clytia hemisphaericaexon
TCONS_00051215-exon-scaffold_20-1575043694:108857..109931TCONS_00051215-exon-scaffold_20-1575043694:108857..109931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:101238..109931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.2144	79.4834	153.748	160.318	115.961	84.1455	77.5314	74.7352	49.2703	42.9351	35.6708	37.7819	16.186	15.355	18.1851	18.098	28.6916	27.4298	10.437	12.5012	29.591	27.2273	42.8959	41.6274	81.7022	78.2664	35.6543	26.9082	28.317	26.0541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00051215 vs. Swiss-Prot (Human)
Match: CETN2 (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.065e-86
Identity = 134/172 (77.91%), Postives = 155/172 (90.12%), Query Frame = 2 
Query:  167 MASAYRKGALMN----KKKGPKPELTEEQKQEIREAFDLFDSDGSGTIDAKELKVAMRALGFDPKKEEIKKMISDIDKDGSGTIDFNEFLVMMTSKMSEKDSKEEILKAFRLFDDDNTGRISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEINENEFLRVMKKTSLY 670
            MAS ++K  + +    K+  PKPELTEEQKQEIREAFDLFD+DG+GTID KELKVAMRALGF+PKKEEIKKMIS+IDK+G+G ++F +FL +MT KMSEKD+KEEILKAF+LFDDD TG+ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGE++E EFLR+MKKTSLY
Sbjct:    1 MASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY 172
The following BLAST results are available for this feature:
BLAST of TCONS_00051215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CETN21.065e-8677.91Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
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