TCONS_00051217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051217
Unique NameTCONS_00051217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051217 ID=TCONS_00051217|Name=TCONS_00051217|organism=Clytia hemisphaerica|type=transcript|length=141bp
GGCGAGTTCAACATCTGTCGTATTGTTCATGACAAAGCTACCGAAGAATT
CGACAGGCCGTAGACCAGTGCTACATCGCAAACGCATGATAGCATCAAAA
CCAATCTCCCTCTTAAAGTTCTTGTATAAATCGTTCACGAA
Run BLAST on NCBI

transcript from alignment at scaffold_20:172020..172220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051217 ID=TCONS_00051217|Name=TCONS_00051217|organism=Clytia hemisphaerica|type=transcript|length=201bp|location=Sequence derived from alignment at scaffold_20:172020..172220+ (Clytia hemisphaerica)
GGCGAGTTCAACATCTGTCGTATTGTTCATGACAAAGCTACCGAAGAATT
CGACAGGCCGTAGACCAGTGCTACATCGCAAACGCATGATAGCATCGAAA
CCAATCTCCCTCTTGAAGTTCTTGTACNTGCTACATCGCAAACGCATGAT
AGCATCAAAACCAATCTCCCTCTTAAAGTTCTTGTATAAATCGTTCACGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032466XLOC_032466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051217-exon-scaffold_20-1491911889:172020..172093TCONS_00051217-exon-scaffold_20-1491911889:172020..172093Clytia hemisphaericaexon
TCONS_00051217-exon-scaffold_20-1510915933:172020..172093TCONS_00051217-exon-scaffold_20-1510915933:172020..172093Clytia hemisphaericaexon
TCONS_00051217-exon-scaffold_20-1575043694:172020..172093TCONS_00051217-exon-scaffold_20-1575043694:172020..172093Clytia hemisphaericaexon
TCONS_00051217-exon-scaffold_20-1491911889:172154..172220TCONS_00051217-exon-scaffold_20-1491911889:172154..172220Clytia hemisphaericaexon
TCONS_00051217-exon-scaffold_20-1510915933:172154..172220TCONS_00051217-exon-scaffold_20-1510915933:172154..172220Clytia hemisphaericaexon
TCONS_00051217-exon-scaffold_20-1575043694:172154..172220TCONS_00051217-exon-scaffold_20-1575043694:172154..172220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:172020..172220 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top