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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051280 ID=TCONS_00051280|Name=TCONS_00051280|organism=Clytia hemisphaerica|type=transcript|length=2924bpRun BLAST on NCBI protein sequence of TCONS_00051280-protein >TCONS_00051280-protein ID=TCONS_00051280-protein|Name=TCONS_00051280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MAAVESSSGTETETDSEYQEPNIKFISDEFPKVILRRSARQITREEEQEERun BLAST on NCBI transcript from alignment at scaffold_200:66924..86038+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051280 ID=TCONS_00051280|Name=TCONS_00051280|organism=Clytia hemisphaerica|type=transcript|length=19115bp|location=Sequence derived from alignment at scaffold_200:66924..86038+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_200:66924..86038+ >TCONS_00051280 ID=TCONS_00051280|Name=TCONS_00051280|organism=Clytia hemisphaerica|type=CDS|length=26775bp|location=Sequence derived from alignment at scaffold_200:66924..86038+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051280 vs. Swiss-Prot (Human)
Match: ORC2 (Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1 SV=2) HSP 1 Score: 366.696 bits (940), Expect = 3.989e-114 Identity = 191/351 (54.42%), Postives = 252/351 (71.79%), Query Frame = 2
Query: 1457 KQTASKELT---ASDILDEYFEIHSAKNRTTTSDKTLSRLTNPKLQQKDIISHLKEVQSTHIHETAKLIQMHSCYFQNWMFQMLNGFNVLLYGFGSKHKLLEEFRKRHLKDQCHIVINGFFPSITIKQILNMITEDLMNSQLSIRNTIDQANHIKKFYDVDKHGKLFLLIHNIDGQMLRSKNVQSILSCLASAKXXXXXXXXXXXXAPLIWDQNISSQFNWLWHDCTTYDAYNEETSYENSLMVQQSGSLALSSLIHVLRSLTPNAKGIFRLLVDIQLDNEDNSSYQGLSFTDLYNRCRERFLVNSDLTLRAQLTEFKDHKLVKSKKGFNGLEYLSVALDCGTLRQYLEHE 2500
K+T SK + SD+++EYFE HS+ ++ TSD+TL +L KL Q+ + + L +V + E +L Q + F WM Q+ GFN++LYG GSK LLE FR L+D H+VINGFFP I++K +LN ITE++++ + R+ +DQ + I + D +LFLLIHN+D QMLR + Q I+ L+S NI++I+SIDH+NAPL+WD S FNWLW++ TTY Y EETSYENSL+V+QSGSL LSSL HVLRSLTPNA+GIFRLL+ QLDN+DN SY GLSF D Y +CRE FLVNSDLTLRAQLTEF+DHKL+++KKG +G+EYL + +D GTL +LE E
Sbjct: 224 KETPSKRMKRDKTSDLVEEYFEAHSS-SKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKE 573 The following BLAST results are available for this feature:
BLAST of TCONS_00051280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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