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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051287 ID=TCONS_00051287|Name=TCONS_00051287|organism=Clytia hemisphaerica|type=transcript|length=6590bpRun BLAST on NCBI transcript from alignment at scaffold_200:109605..127108+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051287 ID=TCONS_00051287|Name=TCONS_00051287|organism=Clytia hemisphaerica|type=transcript|length=17504bp|location=Sequence derived from alignment at scaffold_200:109605..127108+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051287 vs. Swiss-Prot (Human)
Match: RIF1 (Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2) HSP 1 Score: 282.337 bits (721), Expect = 5.422e-76 Identity = 301/1155 (26.06%), Postives = 513/1155 (44.42%), Query Frame = 2
Query: 218 LLQIIRSIKCTNEDKTDAYLTLF-RLIQSNKQESISIITKQINSVLNTVQKHIQHNERSLAEAAITFLGYCLAIEEINFVCKDESLKNISKALCQILET--NGEKTVIIRTLWCFCNQSMKKDIIEQYVERILVFFSTLKENDKIKSETIYNEALKVIKKFCEQCPDSMRSNHDKWAPEMINSLTSKVIKNQEVGFSALEASINVLMVNQEFVSSLLQRLNETEFSQTLNGLY-DENQVHVLNVWACLLRIIGESFFQFNRIKVTNPLLKIAEKAFASKSPEVLLALNNLWRSLIDCVFTRPSEF--FKRMEKIFLLPLK-VRYKNEIVAQESLKTQWYLLCNINQNVNDYIEKAIFVVFDLYL-----PTADATQAAVATSTNNNMKTPDRRKSIHKSPKSPFNAP--PKVKXXXXXXXXXXXXXXERRHQLKSQLELFKGPCIDKKILIKYCNKFICYLSDL------TTSCTPKHENSIANVWYAFLVQLRQDSVECESSAVLREVWGPITNSLKERVEQWXXXXXXXXXXXXXXXXXXXKMTVGSV------------GLKN---GSEDEQIS----------LFVIRLLLHKNFIDHEGYESERFFILFERAIGVVFSSMTDQLRNVDRIFNILEESHGHLTNQDVRWRLWSTLTSLLQGYIIKTNNVNQDGSMDHNFAAILKSLTYTVRFI-NLSKLQEGTFNELLKVWQEIMEAFCRGVSLLS-AEPNIAVEAFCKSLVSSKVIQNATDVKTLSTVIKMISTTTKHLDFSNLTPVYTARLT----PTKISKRLNNPLGNFESFVNVIEHCIEKSFELMPKGKQVEITFIELLESVEYFFTKIESENIVTSSLHHFAPYLSQ---LF------DPKMKSSSKILMKGEKVITQVYKSLENINEMNYTNDTLSKLDILLSKTLATTRKSLRMRTATFWNHTFGKKTGLTYSEELKSVLTKYQAKLSLNVPGMKAPVTQDITFSQLMDDTAQFPEDSSQVSTFMSPSKLKTKPSTHQSPVKIHGSFLSKHKKSPSNKLGSPKDVLGNFLAXXXXXXXXXXXXXXXXATTKHVRRKLPIMREDSCDFVEIKDSPGTKKKRLLTEHQKEIMR-ERKELPAMYNTLDNSQDTTLMRALSQDMTQMTQESLFRIP 3499
LL+ + ++ +TDAYLTL R+ +E I+ I K++ + ++ HI L+ AA+ LG+CL +I + S N + L ++ +T N +K V R LW Q+ +++ + V I+ L + S + EAL VI + EQ P M +WA +I + K G +ALE + +L+ Q+ ++S+ ++L T+ L L+ +N+ +VL +W ++++G + + N LL++ E F S +P + W+SLID P KR+ K+ + PL + + E +A L+ WYLL + ++ E+ + + + VATS N TP +HK SP+ AP P++ L + + ++ L+ L GP + + NK + L L + S KH N++ + V + +D+ + SA+ +E+ + S+ E + + +L LLL ES +K V V GL GS Q++ LF+I+L+ + NF++ G ERFF+ E +G V S T L D + N++ ++ L N++ W++WS + + L I +TN VNQ +++HNF+AI +LT V I + + T LL+ W E+ AF R +L++ AE N+ E ++SS + +++ + +I +I+ +DFS Y ++ P+ SK+ N PLG S +I I SF + + T + S+ + + + S + L++ LF D K S + K EK++ ++ L+ Y ++ L +L LL K +R ++A FWN TF K L Y EELK VLT+ + K L +PG++ + + D T ++SQ++ +S + K+ SFL++ K N + K L +++ V+ ++ + E S DFV I K+R+LT+HQKE+++ +R ++PAMYN LD SQDT TQ +QE IP
Sbjct: 12 LLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSELSSAALQALGFCLYNPKIT---SELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVLKLWPLFVKLLGRTLHRSGSF--INSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPDILCSAKRL-KLLMQPLSSIHVRTETLALTKLEVWWYLLMRLGPHLPANFEQVCVPLIQSTISIDSNASPQGNSCHVATSPGLNPMTP-----VHKGASSPYGAPGTPRMNLSSNLGGMATIPSIQLLG-LEMLLHFLLGP---EALSFAKQNKLVLSLEPLEHPLISSPSFFSKHANTLITAVHDSFVAVGKDAPDVVVSAIWKELIS-LVKSVTESGNKKEKPGSEVLTLLLKSLESIVKSEVFPVSKTLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFN-NFLEC-GVSDERFFLSLESLVGCVLSGPTSPLAFSDSVLNVINQNAKQLENKEHLWKMWSVIVTPLTELINQTNEVNQGDALEHNFSAIYGALTLPVNHIFSEQRFPVATMKTLLRTWSELYRAFARCAALVATAEENLCCEELSSKIMSSLEDEGFSNLLFVDRIIYIITVMVDCIDFSPYNIKYQPKVKSPQRPSDWSKKKNEPLGKLTSLFKLIVKVI-YSFHTLSFKEAHSDTLFTIGNSITGIISSVLGHISLPSMIRKIFATLTRPLALFYENSKLDEVPKVYSCLNNKLEKLLGEIIACLQFSYTGTYDSELLEQLSPLLCIIFLHKNKQIRKQSAQFWNATFAKVMMLVYPEELKPVLTQAKQKFLLLLPGLETVEMMEESSGPYSDGT-----ENSQLNVKISGMERKSNGK--------RDSFLAQTKNKKENMKPAAKLKL--------------------ESSSLKVKGEILLEEEKSTDFVFIPPEGKDAKERILTDHQKEVLKTKRCDIPAMYNNLDVSQDTLF--------TQYSQEEPMEIP 1106 HSP 2 Score: 87.0409 bits (214), Expect = 1.219e-16 Identity = 39/87 (44.83%), Postives = 62/87 (71.26%), Query Frame = 2
Query: 5396 AVFPDLVKCTAPIERVLPSLT---FSRGFGHLVRAQNINTVGDLSSLSENQIEALPIRSPKVKTVRSALRNFTTQMSRDKVVPKSPL 5647
+V+P LV C AP++ +LP +T ++RG G L+RA+NI T+GDLS+L+ ++I+ LPIRSPKV V+ ALR + Q + + + + P+
Sbjct: 2290 SVYPPLVNCVAPVDIILPQITSNMWARGLGQLIRAKNIKTIGDLSTLTASEIKTLPIRSPKVSNVKKALRIYHEQQVKTRGLEEIPV 2376 The following BLAST results are available for this feature:
BLAST of TCONS_00051287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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