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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051366 ID=TCONS_00051366|Name=TCONS_00051366|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CGTATTAATTAAGTACCCGTTAAAATGTATACATTTTGAACGCAAAGgtc
cagaaaaaaatattattcttGTTCTAAATGTTATTACAGTATAAACCAAA
AACTTCTTTCTAAGCTTGTGCTGTCATTTCTGTTTCGTCATTGCCTTTCT
TTGTAATTAGATTATTCTGTTGCTTTTGTTGATTGcagaatttgatgaaa
attacgACCAATAGAACGATACTCCATGCTGTTGCCAACAGACCAAAGTT
TTCAACTCGGAAGGTTCGGCAGCTTCATTTTTCACAGTCGATTCTCTGAA
CAAGAAAGGACTCGCTATCGCTAAACCAATCAAGTACAAACTCAAAACCA
CAAACGCTCCAGCAAAACAGTTCACTTTATCTGTATACGGAAATACATCG
GACAGCGATCCGGATAGAATGGAACCAGCGGAAAATCCGatggctccaaa
cattcgattccATCCAAAATTCTTCTTCTTTGATGATTTGAGGATTCTTT
TCACAACACCAGCATCCATCATGCTGACTAAACAACCGTCAAAGGCGGAA
GCAAAGATATTGATAAACAGAAGAACAAGGAATCGCGTAGAACGAAAATC
GATACTTGAATCGGATTGGTTGGTAGGAGATATTCCATTACTTGTTACGT
TCACTTTCGTTTCAATAACAACTGGTGCAGGGCAAGTGTTTGTCGATTTA
TCTCCGATCACTAAAGACAACAAAGGTTGACCACCGACCAAAACTAATGA
CATAATCGTCATAATAATGACAATGAACACATGATTCTGTTGTTTGTCGG
TTATGAAGCCCCATAAAGGACCAGCAAAAGTCATCCCAAGTAGACGAAGA
CCTGTCACAAGACCAGCTTCTGCTTTGTTCAATCCGACGCCAACGAGGAA
TGGTACCATGTATGGTTTGAAAGCGCCGTCTATTCCAACCGTCAGGAAGA
AGCATATTTTGGCCGGTAACATGTACACATCCACTTTGAAAAGTTCTTTC
AGTCGTTTGCCCGCCAtctcgtttttttttgtttttatgaatTGCAGCTG
TAAAAGAAAAGGTTAAAAATTATAAGTATCCAATTTACATTTCGaagtag
g Run BLAST on NCBI transcript from alignment at scaffold_201:11474..14016+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051366 ID=TCONS_00051366|Name=TCONS_00051366|organism=Clytia hemisphaerica|type=transcript|length=2543bp|location=Sequence derived from alignment at scaffold_201:11474..14016+ (Clytia hemisphaerica)
CGTATTAATTAAGTACCCGTTAAAATGTATACATTTTGAACGCAAAGgtc
cagaaaaaaatattattcttGTTCTAAATGTTATTACAGTATAAACCAAA
AACTTCTTTCTAAGCTTGTGCTGTCATTTCTGTTTCGTCATTGCCTTTCT
TTGTAATTAGATTATTCTGTTGCTTTTGTTGATTGcagaatttgatgaaa
attacgACCAATAGAACGATACTCCATGCTGTTGCCAACAGACCAAAGTA
CGTGAAAGTAGCCTGTCCACCGTACCGACTGAAGACTTGTCCACCAACGA
TATTTGCTACAATAAAGCCAACCCCGAAATACGTAGTATTCATAATCGAT
AGCATAGTGGTGTGAATTCGAGGGTCTGTATTCCTTTTGATGTACAAAAC
CTGTGTTACCAAGCCCAGACCGAAACCCAGGGTCTGCAACGTGTGGATCG
GTATGGAAAGCCATGGGTTGCTTATGAATGcgaatgctagaaaacgaacg
ACGTAAGATAAGCAAGCTAGACAAAGAGCATTCCAAGGTCCTCTCAACAA
TTTGATCAACTTAGCAGCCAGGTACATGACGGGTGCGGCACAAAAAGCGG
CGAAGCCAATCGTTAATCCCACGAGAGTGGTGGACCCATTCAGCTCTTTT
ATTCTCAAGGCTGTGAAGCCAATGTAGATACCTTGGAGTGTACCTAATAC
AAAGACTGTAAGAAGGAATAAGATCATCTCGAANGCTCTTTTATTCTCAA
GGCTGTGAAGCCAATGTAGATACCTTGGAGTGTACCTAATACAAAGACTG
TAAGAAGGAATAAGATCATCTCGAATTTTTTCAacgtttgaaaaatgatt
tctttTAAGGGCGTTTCGTCGACATCGACTTCGGGCACTTTCTCTATTGT
ATTGCTCTTGGATTCTTTAAAGGTTTTCAACTCGGAAGGTTCGGCAGCTT
CATTTTCCTCAGTCGATTCTCTGAACAAGAAAGGACTTGCTATCGCTAAA
CCAATCAAGTACAAACTCAAAACCACAAACGCTCCAGTGAAACAGTTCAC
TTTGTCCGTATGCGGAAATACATCGGACAGCGATCCGGATAGAATGGAAC
CAACGGAAAATCCGatggctccaaacattcgattccATCCAAAATTCTTC
TTCTTTGATGATTTGAGGATTCTTTTCACAACACCAGCATCCNCGGAAAT
ACATCGGACAGCGATCCGGATAGAATGGAACCAACGGAAAATCCGatggc
tccaaacattcgattccATCCAAAATTCTTCTTCTTTGATGATTTGAGGA
TTCTTTTCACAACACCAGCATCCATCATGCTGACTAAACAACCGTCAAAG
GCGGAAGCAAAGATATTGATAAACAGAAGAACAAGGAATCGCGTAGAACG
AAAATCGATACTTGAATCGGATTGGTTGGTAGGAGATATTCCATTACTTG
TTACGTTCACNAAGCCAATCGTTAATCCCACGAGAGTGGTGGACCCATTC
AGCTCTTTTATTCTCAAGGCTGTGAAGCCAATGTAGATACCTTGGAGTGT
ACCTAATACAAAGACTGTAAGAAGGAATAAGATCATCTCGAACTTTTTTA
GCGTTTGGAAAACGATTTCTTTTAAGGGCGTTTCGTCGACATCGACTTCg
ggcactttttctattgtattGCTCTTGGATTCTTTAAAGGTTTTCAACTC
GGAAGGTTCGGCAGCTTCATTTTTCACAGTCGATTCTCTGAACAAGAAAG
GACTCGCTATCGCTAAACCAATCAAGTACAAACTCAAAACCACAAACGCT
CCAGCAAAACAGTTCACTTTATCTGTATACGGAAATACATCGGACAGCGA
TCCGGATAGAATGGAACCAGCGGAAAATCCGatggctccaaacattcgat
tccATCCAAAATTCTTCTTCTTTGATGATTTGAGGATTCTTTTCACAACA
CCAGCATCCATCATGCTGACTAAACAACCGTCAAAGGCGGAAGCAAAGAT
ATTGATAAACAGAAGAACAAGGAATCGCGTAGAACGAAAATCGATACTTG
AATCGGATTGGTTGGTAGGAGATATTCCATTACTTGTTACGTTCACTTTC
GTTTCAATAACAACTGGTGCAGGGCAAGTGTTTGTCGATTTATCTCCGAT
CACTAAAGACAACAAAGGTTGACCACCGACCAAAACTAATGACATAATCG
TCATAATAATGACAATGAACACATGATTCTGTTGTTTGTCGGTTATGAAG
CCCCATAAAGGACCAGCAAAAGTCATCCCAAGTAGACGAAGACCTGTCAC
AAGACCAGCTTCTGCTTTGTTCAATCCGACGCCAACGAGGAATGGTACCA
TGTATGGTTTGAAAGCGCCGTCTATTCCAACCGTCAGGAAGAAGCATATT
TTGGCCGGTAACATGTACACATCCACTTTGAAAAGTTCTTTCAGTCGTTT
GCCCGCCAtctcgtttttttttgtttttatgaatTGCAGCTGTAAAAGAA
AAGGTTAAAAATTATAAGTATCCAATTTACATTTCGaagtagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051366-exon-scaffold_201-1491911889:11474..11720 | TCONS_00051366-exon-scaffold_201-1491911889:11474..11720 | Clytia hemisphaerica | exon |
| TCONS_00051366-exon-scaffold_201-1510915933:11474..11720 | TCONS_00051366-exon-scaffold_201-1510915933:11474..11720 | Clytia hemisphaerica | exon |
| TCONS_00051366-exon-scaffold_201-1575043694:11474..11720 | TCONS_00051366-exon-scaffold_201-1575043694:11474..11720 | Clytia hemisphaerica | exon |
| TCONS_00051366-exon-scaffold_201-1491911889:13163..14016 | TCONS_00051366-exon-scaffold_201-1491911889:13163..14016 | Clytia hemisphaerica | exon |
| TCONS_00051366-exon-scaffold_201-1510915933:13163..14016 | TCONS_00051366-exon-scaffold_201-1510915933:13163..14016 | Clytia hemisphaerica | exon |
| TCONS_00051366-exon-scaffold_201-1575043694:13163..14016 | TCONS_00051366-exon-scaffold_201-1575043694:13163..14016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:11474..14016 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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