TCONS_00051378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051378
Unique NameTCONS_00051378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051378 ID=TCONS_00051378|Name=TCONS_00051378|organism=Clytia hemisphaerica|type=transcript|length=618bp
AAAAACATTGTTAACGCATTATACTGAATTTCACACACccaaaatccaac
attgtttCTCGAAGTGTCATTACGATAAATCATGTTACTCTTTGGAGGTT
GTACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCG
ATCAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAA
GTTGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaa
atgaattttatgggTGAAGGCAAAAAAATGATCCGATGTTATTTTGATGA
AGATGGTGGCTGGCTAGTGTTTCAACGAAAAGTTGATGCTTCAGTGAATT
TCAACATTGGATGGGATTTCTATAAAAATGGTTTTGGTGACCCAAGAGGG
AGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCAGCCAAGCACA
ACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGTGTTAGTATTT
CAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAAATATCAGCTA
ACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAAGCTGCGATGG
TATGTTTTTCAGTACAAC
Run BLAST on NCBI

transcript from alignment at scaffold_201:154549..155276+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051378 ID=TCONS_00051378|Name=TCONS_00051378|organism=Clytia hemisphaerica|type=transcript|length=728bp|location=Sequence derived from alignment at scaffold_201:154549..155276+ (Clytia hemisphaerica)
AAAAACATTGTTAACGCATTATACTGAATTTCACACACccaaaatccaac
attgtttCTCGAAGTGTCATTACGATAAATCATGTTACTCTTTGGAGGTT
GTACAGACTACATTATACCATTGCAAGTTCCATAACCAGTTCATTAAGCG
ATCAAACCGAACAACAGAATCGAACACAAATATCTACTCAGAGATACGAA
GTTGTGACGATCTCTTCGATATTGGTATAAGGAATGCAGGTGCttatgaa
atgaattttatgggTGAAGGCAAAAAAATGATCCGATGTTATTTTGATGA
AGATGGTGGCTGGCTAGTGTTTCAACGAAAAGTTGATGCTTCAGTGAATT
TCAACATTGGATGGGATTTCTATAAAAATGGTTTTGGTGACCCAAGAGGT
TAGTTTTGTACTTTTCTCAcgactttctttttttcaaagttcagacagac
agacagacagacagaccaACTATGCTAATAAATAAACTGGTTGTATTCTT
TCTGTTAGGGAGCTTCTGGCTGGGTAACGATCTGATTCACGAAGTGACCA
GCCAAGCACAACATCAAATCAGAATCGTTCTGACCACTTTTACTGGAGGT
GTTAGTATTTCAAAATATGATCACTTCGAAGTCGCAAGTGAGGCAATGAA
ATATCAGCTAACAGCAACTAATTTCAGTCAGGGGTTCGATTTATTCAAAA
GCTGCGATGGTATGTTTTTCAGTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032556XLOC_032556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051378-exon-scaffold_201-1491911889:154549..154946TCONS_00051378-exon-scaffold_201-1491911889:154549..154946Clytia hemisphaericaexon
TCONS_00051378-exon-scaffold_201-1510915933:154549..154946TCONS_00051378-exon-scaffold_201-1510915933:154549..154946Clytia hemisphaericaexon
TCONS_00051378-exon-scaffold_201-1575043694:154549..154946TCONS_00051378-exon-scaffold_201-1575043694:154549..154946Clytia hemisphaericaexon
TCONS_00051378-exon-scaffold_201-1491911889:155057..155276TCONS_00051378-exon-scaffold_201-1491911889:155057..155276Clytia hemisphaericaexon
TCONS_00051378-exon-scaffold_201-1510915933:155057..155276TCONS_00051378-exon-scaffold_201-1510915933:155057..155276Clytia hemisphaericaexon
TCONS_00051378-exon-scaffold_201-1575043694:155057..155276TCONS_00051378-exon-scaffold_201-1575043694:155057..155276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:154549..155276 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173485	0.169175	0.650952	0.293154	0.116977	0	0	0.104405	0	0	0.790937	0	5.12996	4.82522	0.918079	0.253299	0.294816	0.481668	2.81146	3.41857	0.598086	0.736339	0.429924	0.632949	1.69726	0.8617	0	0	0.0962776	0
Blast
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BLAST of TCONS_00051378 vs. Swiss-Prot (Human)
Match: ANGL4 (Angiopoietin-related protein 4 OS=Homo sapiens GN=ANGPTL4 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.527e-24
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  176 TNIYSEIRSCDDLFDIGIRNAGAYEMNFMGEGKKMIRCYFDEDGGWLVFQRKVDASVNFNIGWDFYKNGFGDPRGSFWLGNDLIHEVTSQAQHQIRIVLTTFTGGVSISKYD-HFEVASEAMKYQLTATNFSQ 571
            + ++   R C +LF +G R +G +E+   G    ++ C    DGGW V QR+ D SV+FN  W+ YK GFGDP G FWLG + +H +T     ++ + L  + G   + ++  H      A   QLTA    Q
Sbjct:  179 SRLHRLPRDCQELFQVGERQSGLFEIQPQGSPPFLVNCKMTSDGGWTVIQRRHDGSVDFNRPWEAYKAGFGDPHGEFWLGLEKVHSITGDRNSRLAVQLRDWDGNAELLQFSVHLGGEDTAYSLQLTAPVAGQ 311
The following BLAST results are available for this feature:
BLAST of TCONS_00051378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL41.527e-2434.59Angiopoietin-related protein 4 OS=Homo sapiens GN=... [more]
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