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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051395 ID=TCONS_00051395|Name=TCONS_00051395|organism=Clytia hemisphaerica|type=transcript|length=2011bpRun BLAST on NCBI protein sequence of TCONS_00051395-protein >TCONS_00051395-protein ID=TCONS_00051395-protein|Name=TCONS_00051395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp MLYLEDYIELIEQLPQDLRDRFTDMRELDLKVQNNIDTLDSRVRRFFTEARun BLAST on NCBI transcript from alignment at scaffold_201:668569..674837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051395 ID=TCONS_00051395|Name=TCONS_00051395|organism=Clytia hemisphaerica|type=transcript|length=6269bp|location=Sequence derived from alignment at scaffold_201:668569..674837+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:668569..674837+ >TCONS_00051395 ID=TCONS_00051395|Name=TCONS_00051395|organism=Clytia hemisphaerica|type=CDS|length=13431bp|location=Sequence derived from alignment at scaffold_201:668569..674837+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051395 vs. Swiss-Prot (Human)
Match: ING3 (Inhibitor of growth protein 3 OS=Homo sapiens GN=ING3 PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 7.721e-50 Identity = 85/124 (68.55%), Postives = 106/124 (85.48%), Query Frame = 1
Query: 166 MLYLEDYIELIEQLPQDLRDRFTDMRELDLKVQNNIDTLDSRVRRFFTEARKSKPDQVEEDYKNIHQSYKQALDNADEKVSMASQIYDLVDRHLRKLDQELSRFKMELEADCSGITEILERRSV 537
MLYLEDY+E+IEQLP DLRDRFT+MRE+DL+VQN +D L+ RV FF A+K+KP+ EE +I + Y +AL++ADEKV +A+QIYDLVDRHLRKLDQEL++FKMELEAD +GITEILERRS+
Sbjct: 1 MLYLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELEADNAGITEILERRSL 124 HSP 2 Score: 138.658 bits (348), Expect = 3.295e-35 Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 1177 NAAIDWVPDPNEPTYCLCNQVSYGEMVGCDNPSCPIEWFHYGCVGLTDAPKGKWYCPDCSAVIKKRRMR 1383
N+ +DW DPNEP YC+CNQVSYGEMVGCDN CPIEWFHYGCVGLT+APKGKWYCP C+A +K+R R
Sbjct: 348 NSQVDWTYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSR 416 The following BLAST results are available for this feature:
BLAST of TCONS_00051395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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