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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051464 ID=TCONS_00051464|Name=TCONS_00051464|organism=Clytia hemisphaerica|type=transcript|length=2726bp
GCATAATGTAGTAATTGAGTTTAGATCTTAGCACAATTTCTTTCTTATAG
GACACGTTATTCAAGCCACCTTGACATTAGTGTAGATCCAGAAACAACAG
CAGAGTTACAAGAAGACCTTGATCAAGTTTGTAAATCTATTATCAGTTTG
CAACTTAACAGTATATTAGATTCCTATTTCTGAGATTCTGATGATAGAAT
AGTGAAGTGTATTATTTTATGTGAATCAAAGTGAAGTTATTCTAGGCCAG
TTCCAAACCTTTAACAATTTTCTGTTAGATTTTGATGAAGTACTAAGTAT
AGCTTTTTagttaatttcctaaaaatagtctcttaataagatttttctTT
CTCTCAACAGACAGCAAATGATGTTCAACAGGCAACTCCTTCAACTCCGA
GACCCGTTAGATTTAAAAGCAATCAGGTATATAAGACTCTATGCTACAAA
TTAAGGACTAACTCAAATTCATCAGTGAGGAGATTAGGAACTGAGTGTGA
GAtaaatgaaagttttttttctttctagatcACGTCGACTCCAAACAATG
ATGGAAGTAATTCACCACTGCTTAGCCCAAATACACGCCAAAGAAAGCAT
CGAATAGCAACTGATTTAACATCATACATCGACAACTTGCATTTGTCCGT
AGAGGATCAAATTGACATCCTTAAACTCTCTTTGAGGCAAATGAATctta
gtgaaaaattgaaatggttcCGAAAGCCATCTAAGGCTGGAAGGAAAATG
ATAAAGTTTGAAACAAGGGAAGCAGCCTGGAACTTCTGGCATCGTAATAG
CACAGCCTCGACCTTGACATCAAGACCAGCTCGTTTGAGAGTTGCTGACA
AACCTCGCGTACAAGAAAGTTTGAAGTTTGTGCAAACAACACGCCAAGTT
TCTGTCAGAAACAAACCTTATTTTGAGAGTATTCATTTCACTGTCACGGA
GACAATGAAGAACCTATTTCGCAAGTTCCTTACAGAAAACCCTGACCACA
ACATTTCTTATGGAACCTTTTTGTCTTTGAAACCATTCTATGTCAGGGCA
GCTGGaaccaaagattttgaaatgtGTGTTTGCAAAAAACATCTCCATGC
TCGTCGATCTATCGATGCCCTGATCAAAGTATGTGAAAAACAGTTGATTG
TTCTCGATGAGATAAATGACTACtattcatttttcaactacATGAACAGA
GAGTGTACAGATTGTGAAACAGCAGGCTATATTTCATGGGAATGTGttaa
agaaaaagacaaactttgCAAACATGTCTCTCCACGCTGGGAAGCTTTGA
GCCAGCGAATCCTTTCTGAGCATGATCCAAATACCACAGTGAAATTTGAG
CATTTTGTCAAAGTTGAAGTGGTGACTAAGAAAGGCAAGGCAGTTGAACG
TTTGGCAGCTGTTTCAATAATGGCAAATGCAGAATTTCTGGTTGACTTCA
TCAGCAAAATGCTGGCAAAAATTCAGTTTCATCGAAACCATTTAAAGCAT
TACCGAAGCACCCTACCGATCCTGAGACAATGGTTTGCTGACAGTAACCA
TTTGGACGTGGATTATTCTGAGAACCTCAAGATTCCTGTCAAGTATGAAC
CACAAAGTTTGCATTGGTCACATACCCAGGTAACTGTTCATTCTGGCATC
TTAAAAACGCCGATGTGCAAGTCCTATCATCCGTATATTTCGAATGATCG
AAAACATGATCAGGCATTTGCACAGGTCTGCATCGAAAAGATGATTGAAA
ACATTCCAGTGGAATTTAAAGATAGACCAATCATCATTGAATCAGATAAT
TGTACTGCACAGTACAAATCCGTGACCCACTTTTGGTCGATTCAGGATCT
TGCAAAACGACTCGATACAACAATTGTAAGAGTTTATGGGATTGCAGAAC
ATGGCAAAGGAGAAGTCGATCATGTTGGGGGCGTTGCAAAAACATCCGTT
CGCAGAGAAGTTGCTAACGGATCTCTGTTCATCAATGCTGGtgatattgt
ttcatttttgcaAAACAAATTTGAAGAGAAGGAAAGTCCACGATATGTCA
TTGATGAAATTACTGATCAGGCTGAAAGGTTGAGGAACATATGCAGGTTA
AAGAACTTTTCGTCCATAGAAGGTTCCAGTAAGTTCCAAGTAATGGTCTT
CAGACCAAATAACCCAAAGATTCTAGCAGCTGAAAGGATCTGTATTTGCT
CTGAGTGTGAGGAAAGTTATGGCTCCTGCTCTCTTTTCAAGGAGTATGAA
ATGGTAGTTGGCGATCTTAATCACACCTCACTGCGATCAGATGGTGCTCT
CATTCAAAATGAAAAGGTACGAGTCACAAGTGACTTCATCATCCCGGGAA
CCGTTTGTGCTATTGCTGCCAGTGACAACTCATCTGACACAGTTTGGTTT
GTTCTAATATCAAGTGACGAGATGTCCAGCAATGATGTTACTACTGATGA
CTATGGGCACTCTATCCCTCAAGGAGAAGAGTATTTCAAGGGACACTATT
TGGAGAAGCATTCAAGCAAACGATCTGCAGATTATTATCAAGCAACCAAC
AAAATTTCCCTAATTTCCAAGGCTAGCGTAGTTTATCCATTTGTtgactt
tgaaaaaaacaataaagaCTTGGCGATTATAACAAATGTAGAGCTTTGCC
AAATCATTGCCTTTGTAGAACATTATGAATTTACTGAGTAATATTGTTTG
ACTATATTGTTTTCGTTCTGTTGTAT Run BLAST on NCBI protein sequence of TCONS_00051464-protein >TCONS_00051464-protein ID=TCONS_00051464-protein|Name=TCONS_00051464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
MNLSEKLKWFRKPSKAGRKMIKFETREAAWNFWHRNSTASTLTSRPARLR
VADKPRVQESLKFVQTTRQVSVRNKPYFESIHFTVTETMKNLFRKFLTEN
PDHNISYGTFLSLKPFYVRAAGTKDFEMCVCKKHLHARRSIDALIKVCEK
QLIVLDEINDYYSFFNYMNRECTDCETAGYISWECVKEKDKLCKHVSPRW
EALSQRILSEHDPNTTVKFEHFVKVEVVTKKGKAVERLAAVSIMANAEFL
VDFISKMLAKIQFHRNHLKHYRSTLPILRQWFADSNHLDVDYSENLKIPV
KYEPQSLHWSHTQVTVHSGILKTPMCKSYHPYISNDRKHDQAFAQVCIEK
MIENIPVEFKDRPIIIESDNCTAQYKSVTHFWSIQDLAKRLDTTIVRVYG
IAEHGKGEVDHVGGVAKTSVRREVANGSLFINAGDIVSFLQNKFEEKESP
RYVIDEITDQAERLRNICRLKNFSSIEGSSKFQVMVFRPNNPKILAAERI
CICSECEESYGSCSLFKEYEMVVGDLNHTSLRSDGALIQNEKVRVTSDFI
IPGTVCAIAASDNSSDTVWFVLISSDEMSSNDVTTDDYGHSIPQGEEYFK
GHYLEKHSSKRSADYYQATNKISLISKASVVYPFVDFEKNNKDLAIITNV
ELCQIIAFVEHYEFTE Run BLAST on NCBI transcript from alignment at scaffold_201:542354..545079 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051464 ID=TCONS_00051464|Name=TCONS_00051464|organism=Clytia hemisphaerica|type=transcript|length=2726bp|location=Sequence derived from alignment at scaffold_201:542354..545079 (Clytia hemisphaerica)
ATACAACAGAACGAAAACAATATAGTCAAACAATATTACTCAGTAAATTC
ATAATGTTCTACAAAGGCAATGATTTGGCAAAGCTCTACATTTGTTATAA
TCGCCAAGtctttattgtttttttcaaagtcaACAAATGGATAAACTACG
CTAGCCTTGGAAATTAGGGAAATTTTGTTGGTTGCTTGATAATAATCTGC
AGATCGTTTGCTTGAATGCTTCTCCAAATAGTGTCCCTTGAAATACTCTT
CTCCTTGAGGGATAGAGTGCCCATAGTCATCAGTAGTAACATCATTGCTG
GACATCTCGTCACTTGATATTAGAACAAACCAAACTGTGTCAGATGAGTT
GTCACTGGCAGCAATAGCACAAACGGTTCCCGGGATGATGAAGTCACTTG
TGACTCGTACCTTTTCATTTTGAATGAGAGCACCATCTGATCGCAGTGAG
GTGTGATTAAGATCGCCAACTACCATTTCATACTCCTTGAAAAGAGAGCA
GGAGCCATAACTTTCCTCACACTCAGAGCAAATACAGATCCTTTCAGCTG
CTAGAATCTTTGGGTTATTTGGTCTGAAGACCATTACTTGGAACTTACTG
GAACCTTCTATGGACGAAAAGTTCTTTAACCTGCATATGTTCCTCAACCT
TTCAGCCTGATCAGTAATTTCATCAATGACATATCGTGGACTTTCCTTCT
CTTCAAATTTGTTTtgcaaaaatgaaacaatatcaCCAGCATTGATGAAC
AGAGATCCGTTAGCAACTTCTCTGCGAACGGATGTTTTTGCAACGCCCCC
AACATGATCGACTTCTCCTTTGCCATGTTCTGCAATCCCATAAACTCTTA
CAATTGTTGTATCGAGTCGTTTTGCAAGATCCTGAATCGACCAAAAGTGG
GTCACGGATTTGTACTGTGCAGTACAATTATCTGATTCAATGATGATTGG
TCTATCTTTAAATTCCACTGGAATGTTTTCAATCATCTTTTCGATGCAGA
CCTGTGCAAATGCCTGATCATGTTTTCGATCATTCGAAATATACGGATGA
TAGGACTTGCACATCGGCGTTTTTAAGATGCCAGAATGAACAGTTACCTG
GGTATGTGACCAATGCAAACTTTGTGGTTCATACTTGACAGGAATCTTGA
GGTTCTCAGAATAATCCACGTCCAAATGGTTACTGTCAGCAAACCATTGT
CTCAGGATCGGTAGGGTGCTTCGGTAATGCTTTAAATGGTTTCGATGAAA
CTGAATTTTTGCCAGCATTTTGCTGATGAAGTCAACCAGAAATTCTGCAT
TTGCCATTATTGAAACAGCTGCCAAACGTTCAACTGCCTTGCCTTTCTTA
GTCACCACTTCAACTTTGACAAAATGCTCAAATTTCACTGTGGTATTTGG
ATCATGCTCAGAAAGGATTCGCTGGCTCAAAGCTTCCCAGCGTGGAGAGA
CATGTTTGcaaagtttgtctttttctttaaCACATTCCCATGAAATATAG
CCTGCTGTTTCACAATCTGTACACTCTCTGTTCATgtagttgaaaaatga
ataGTAGTCATTTATCTCATCGAGAACAATCAACTGTTTTTCACATACTT
TGATCAGGGCATCGATAGATCGACGAGCATGGAGATGTTTTTTGCAAACA
CacatttcaaaatctttggttCCAGCTGCCCTGACATAGAATGGTTTCAA
AGACAAAAAGGTTCCATAAGAAATGTTGTGGTCAGGGTTTTCTGTAAGGA
ACTTGCGAAATAGGTTCTTCATTGTCTCCGTGACAGTGAAATGAATACTC
TCAAAATAAGGTTTGTTTCTGACAGAAACTTGGCGTGTTGTTTGCACAAA
CTTCAAACTTTCTTGTACGCGAGGTTTGTCAGCAACTCTCAAACGAGCTG
GTCTTGATGTCAAGGTCGAGGCTGTGCTATTACGATGCCAGAAGTTCCAG
GCTGCTTCCCTTGTTTCAAACTTTATCATTTTCCTTCCAGCCTTAGATGG
CTTTCGgaaccatttcaatttttcactaagATTCATTTGCCTCAAAGAGA
GTTTAAGGATGTCAATTTGATCCTCTACGGACAAATGCAAGTTGTCGATG
TATGATGTTAAATCAGTTGCTATTCGATGCTTTCTTTGGCGTGTATTTGG
GCTAAGCAGTGGTGAATTACTTCCATCATTGTTTGGAGTCGACGTgatct
agaaagaaaaaaaactttcatttaTCTCACACTCAGTTCCTAATCTCCTC
ACTGATGAATTTGAGTTAGTCCTTAATTTGTAGCATAGAGTCTTATATAC
CTGATTGCTTTTAAATCTAACGGGTCTCGGAGTTGAAGGAGTTGCCTGTT
GAACATCATTTGCTGTCTGTTGAGAGAAagaaaaatcttattaagagact
atttttaggaaattaactAAAAAGCTATACTTAGTACTTCATCAAAATCT
AACAGAAAATTGTTAAAGGTTTGGAACTGGCCTAGAATAACTTCACTTTG
ATTCACATAAAATAATACACTTCACTATTCTATCATCAGAATCTCAGAAA
TAGGAATCTAATATACTGTTAAGTTGCAAACTGATAATAGATTTACAAAC
TTGATCAAGGTCTTCTTGTAACTCTGCTGTTGTTTCTGGATCTACACTAA
TGTCAAGGTGGCTTGAATAACGTGTCCTATAAGAAAGAAATTGTGCTAAG
ATCTAAACTCAATTACTACATTATGC Coding sequence (CDS) from alignment at scaffold_201:542354..545079 >TCONS_00051464 ID=TCONS_00051464|Name=TCONS_00051464|organism=Clytia hemisphaerica|type=CDS|length=2001bp|location=Sequence derived from alignment at scaffold_201:542354..545079 (Clytia hemisphaerica)
TTACTCAGTAAATTCATAATGTTCTACAAAGGCAATGATTTGGCAAAGCT
CTACATTTGTTATAATCGCCAAGtctttattgtttttttcaaagtcaACA
AATGGATAAACTACGCTAGCCTTGGAAATTAGGGAAATTTTGTTGGTTGC
TTGATAATAATCTGCAGATCGTTTGCTTGAATGCTTCTCCAAATAGTGTC
CCTTGAAATACTCTTCTCCTTGAGGGATAGAGTGCCCATAGTCATCAGTA
GTAACATCATTGCTGGACATCTCGTCACTTGATATTAGAACAAACCAAAC
TGTGTCAGATGAGTTGTCACTGGCAGCAATAGCACAAACGGTTCCCGGGA
TGATGAAGTCACTTGTGACTCGTACCTTTTCATTTTGAATGAGAGCACCA
TCTGATCGCAGTGAGGTGTGATTAAGATCGCCAACTACCATTTCATACTC
CTTGAAAAGAGAGCAGGAGCCATAACTTTCCTCACACTCAGAGCAAATAC
AGATCCTTTCAGCTGCTAGAATCTTTGGGTTATTTGGTCTGAAGACCATT
ACTTGGAACTTACTGGAACCTTCTATGGACGAAAAGTTCTTTAACCTGCA
TATGTTCCTCAACCTTTCAGCCTGATCAGTAATTTCATCAATGACATATC
GTGGACTTTCCTTCTCTTCAAATTTGTTTtgcaaaaatgaaacaatatca
CCAGCATTGATGAACAGAGATCCGTTAGCAACTTCTCTGCGAACGGATGT
TTTTGCAACGCCCCCAACATGATCGACTTCTCCTTTGCCATGTTCTGCAA
TCCCATAAACTCTTACAATTGTTGTATCGAGTCGTTTTGCAAGATCCTGA
ATCGACCAAAAGTGGGTCACGGATTTGTACTGTGCAGTACAATTATCTGA
TTCAATGATGATTGGTCTATCTTTAAATTCCACTGGAATGTTTTCAATCA
TCTTTTCGATGCAGACCTGTGCAAATGCCTGATCATGTTTTCGATCATTC
GAAATATACGGATGATAGGACTTGCACATCGGCGTTTTTAAGATGCCAGA
ATGAACAGTTACCTGGGTATGTGACCAATGCAAACTTTGTGGTTCATACT
TGACAGGAATCTTGAGGTTCTCAGAATAATCCACGTCCAAATGGTTACTG
TCAGCAAACCATTGTCTCAGGATCGGTAGGGTGCTTCGGTAATGCTTTAA
ATGGTTTCGATGAAACTGAATTTTTGCCAGCATTTTGCTGATGAAGTCAA
CCAGAAATTCTGCATTTGCCATTATTGAAACAGCTGCCAAACGTTCAACT
GCCTTGCCTTTCTTAGTCACCACTTCAACTTTGACAAAATGCTCAAATTT
CACTGTGGTATTTGGATCATGCTCAGAAAGGATTCGCTGGCTCAAAGCTT
CCCAGCGTGGAGAGACATGTTTGcaaagtttgtctttttctttaaCACAT
TCCCATGAAATATAGCCTGCTGTTTCACAATCTGTACACTCTCTGTTCAT
gtagttgaaaaatgaataGTAGTCATTTATCTCATCGAGAACAATCAACT
GTTTTTCACATACTTTGATCAGGGCATCGATAGATCGACGAGCATGGAGA
TGTTTTTTGCAAACACacatttcaaaatctttggttCCAGCTGCCCTGAC
ATAGAATGGTTTCAAAGACAAAAAGGTTCCATAAGAAATGTTGTGGTCAG
GGTTTTCTGTAAGGAACTTGCGAAATAGGTTCTTCATTGTCTCCGTGACA
GTGAAATGAATACTCTCAAAATAAGGTTTGTTTCTGACAGAAACTTGGCG
TGTTGTTTGCACAAACTTCAAACTTTCTTGTACGCGAGGTTTGTCAGCAA
CTCTCAAACGAGCTGGTCTTGATGTCAAGGTCGAGGCTGTGCTATTACGA
TGCCAGAAGTTCCAGGCTGCTTCCCTTGTTTCAAACTTTATCATTTTCCT
TCCAGCCTTAGATGGCTTTCGgaaccatttcaatttttcactaagATTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051464-exon-scaffold_201-1491911889:542354..545079 | TCONS_00051464-exon-scaffold_201-1491911889:542354..545079 | Clytia hemisphaerica | exon |
| TCONS_00051464-exon-scaffold_201-1510915933:542354..545079 | TCONS_00051464-exon-scaffold_201-1510915933:542354..545079 | Clytia hemisphaerica | exon |
| TCONS_00051464-exon-scaffold_201-1575043694:542354..545079 | TCONS_00051464-exon-scaffold_201-1575043694:542354..545079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:542354..545079 . |
Blast
The following BLAST results are available for this feature:
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