TCONS_00051473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051473
Unique NameTCONS_00051473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051473 ID=TCONS_00051473|Name=TCONS_00051473|organism=Clytia hemisphaerica|type=transcript|length=857bp
ataccctgattacatataaaaacattcttcAATCTATTGTCACATAAACC
AATGATccaattttctttacttttctttcCCCAACCACTTAAACATTATT
GACAGTATATCATACTATatttaaaacattcaaactgTGAAAGAAATATA
TTCGAACATTGAACGCATTCGAATATTACGGCGTGCTATTTGAGagatta
ttttcgaatgttttgttttggcaGCGcagtgtcttctttttcttgaaaat
tatcAAACTTGAAAGATTCGTATGTTTCTGTGTGTTTTGTGTACTAGTGG
ACCTAAGTGTCTGAATGAAATGGAtgtaatttagtaccaatattATATCT
GGCattttctttttacaaatttgccctaaatgttacttttttttttttgc
caaaccAATGCAGAAAAGAGTGGTGTTTAAAAGGCATAAATCTGCATAAA
CAGTGTTTTCAGTAGAATGATTCAAGGATCATAATTACTTTTCTCTGCCT
TTCCTTGTACTTTTTTCAATAGATTTAATTTACGTTGTGTTCgaatgaga
aaaacttgttttcattttcaggagtcTAAGGTGTGGTACATAGTGATTAA
TAAgaggaatgttctttgaataaaaacatccacagaTTTTGTTTAGCCTC
CATTGATGCAGTATCCTATGCATATCATTTTTACTGATTGCCAATTTAGG
GGGGtaggtcccccctttttcagaaaatcaggattttcatgttggtatcg
ataccaatttaggggggtgggtccccccttttttagaaaattggggtttt
caagttggtattgataccaatttagggggtggtggtgtctactactttta
aatctcg
Run BLAST on NCBI

transcript from alignment at scaffold_201:657789..658645

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051473 ID=TCONS_00051473|Name=TCONS_00051473|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_201:657789..658645 (Clytia hemisphaerica)
cgagatttaaaagtagtagacaccaccaccccctaaattggtatcaatac
caacttgaaaaccccaattttctaaaaaaggggggacccacccccctaaa
ttggtatcgataccaacatgaaaatcctgattttctgaaaaaggggggac
ctaCCCCCCTAAATTGGCAATCAGTAAAAATGATATGCATAGGATACTGC
ATCAATGGAGGCTAAACAAAAtctgtggatgtttttattcaaagaacatt
cctcTTATTAATCACTATGTACCACACCTTAgactcctgaaaatgaaaac
aagtttttctcattcGAACACAACGTAAATTAAATCTATTGAAAAAAGTA
CAAGGAAAGGCAGAGAAAAGTAATTATGATCCTTGAATCATTCTACTGAA
AACACTGTTTATGCAGATTTATGCCTTTTAAACACCACTCTTTTCTGCAT
Tggtttggcaaaaaaaaaaaagtaacatttagggcaaatttgtaaaaaga
aaatGCCAGATATaatattggtactaaattacaTCCATTTCATTCAGACA
CTTAGGTCCACTAGTACACAAAACACACAGAAACATACGAATCTTTCAAG
TTTgataattttcaagaaaaagaagacactgCGCtgccaaaacaaaacat
tcgaaaataatctCTCAAATAGCACGCCGTAATATTCGAATGCGTTCAAT
GTTCGAATATATTTCTTTCAcagtttgaatgttttaaatATAGTATGATA
TACTGTCAATAATGTTTAAGTGGTTGGGgaaagaaaagtaaagaaaattg
gATCATTGGTTTATGTGACAATAGATTgaagaatgtttttatatgtaatc
agggtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032627XLOC_032627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051473-exon-scaffold_201-1491911889:657789..658645TCONS_00051473-exon-scaffold_201-1491911889:657789..658645Clytia hemisphaericaexon
TCONS_00051473-exon-scaffold_201-1510915933:657789..658645TCONS_00051473-exon-scaffold_201-1510915933:657789..658645Clytia hemisphaericaexon
TCONS_00051473-exon-scaffold_201-1575043694:657789..658645TCONS_00051473-exon-scaffold_201-1575043694:657789..658645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:657789..658645 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51009	1.35797	3.45144	3.68036	1.26307	0.992268	1.52992	2.0255	0.500028	0.654816	1.37025	0.72865	0.75906	1.01322	0.540294	0.829291	0.761549	0.802919	0.441076	0.804568	0.567729	1.26583	0.70974	0.656906	1.06736	0.748058	0.953526	1.27957	1.74011	0.801576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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