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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051537 ID=TCONS_00051537|Name=TCONS_00051537|organism=Clytia hemisphaerica|type=transcript|length=2058bp
ATTATCAATCTATATTGGATATGGTGGGTGACAAAAGATCAAGTCTTGGA
CCCAAACTCCATTTACACAGTGACGGTTCAATTGAGATTTCCCTCAAAGA
GGGTGGATACATCCGGATACGTTATAAAGATCTTGTACGGGCTGATCACG
AACGTAAAGCACGCTTACGTCAAACCGCAAATACGACCGCAGGCTCGGCG
TTGAGGGCTCAAAACGCCGTTGTTCTTATAGACGAGTCGACAACGTCAGC
GACGACGGACAATACCGGTAAACTAGGCGGTAGTAAAGAGACTATGTCGG
ATTCCACCCAACCTGATACCAGTAGGAAAACTAATATGGAATCGAAAAGG
TTCGGTCCGGGTCTGATTAAAAAAGAGAAATCGCCAAACCGAAACACCGA
AAAAAACGAAACTCTACTAATTACGCAAACTGGAAATTCAAATGATTCGA
CAAGTACTACACACAGTATTAATACAGTAACGAAAGGAGATACGAACAAC
AAAAACAGAAGTGTCAATATAGAAAGTGACAATACTTCAACCACTATAAA
AGATAAAACGGGCATCAAAACCTCGAACAAAAGTGACGAAAACTTTACAG
CAAAACAAACTCAAAATCTtgataaaatgaatgaaaatttatcaaCTCGG
AATGATATTAAAGATAATGAGAGGACGCAAAATATGTTAGATGACATTGA
TGTAACAAAGATTTCAAAGcaagaaaatttaaagtttgatataaaAGGTT
CATCAACATCACAAAATTCGAATGAGGTCAATTTGGCAATAAACACATCT
AAGGACACGTTGAAATCGAACGATGAAAGCTCTACTAAATCTGGCGGTAG
CAATTCTCTTTCAAATGAAACTCCTAGTAATACTGATAATAGTGATTCAG
CTCCTGAACATCGAAAGGTAGACAAAAAAGACAGTTCGAAAGGTATTTTT
TCTAAAGATGAAACTAAAAACTCTACTGCGAATCATTCAGGTTCTgatat
aaaaaacaaagaccatACTTCTATGGATGAACGCATTATCAAGGAAAACT
TGAATGAATTGAATGATAGCCCTGTCATGAATGAAAATGAGTTATTGGAT
TTTGACGATTCTGATGGTAATGACGAGGACATGGATGATAAATTATTGAC
GGAGGATCAATTGTTAGGTAATGACGACGAGGACGAGGATGGTGTTGAGA
TGACGAGTTCTACAGTACAAAGTGATACTTCGAAACCCGAAAAGAGTGAA
AAtcttaatattgaaaagaaagattttgttaGTAAAACTGAGATTACCAA
AAGTTGTCAAGAGACAACAGAAGTAGACACTGGAATACGTATAACTCGTA
TAATAGATACGGAAGTGAAAAAATCTGCAGTTGCGGCTTCCACTGGAGAA
CTGAGCTCTAACTCATCAAAAAGTATCGCTCAAGGGAGTGGCACTATAGA
ATCTTCAAATAAAGAACTGAACCGTACAAATATGGACACGCCAGGATCAA
AAGCAACAGAACAGAAACTCGATAGTAAAACTATGAATAATACAAGAGTT
GATTCACTAGACTTGGATTTTGAAACTGATCAGATAGCTTCTAGTCCAAA
TTTAAAATCATGGGAACCTAATTTAAACATAGACTCTACACCAACCAAAA
ATCAATCTGACGTCAACAAAAATATCCAATCAGATTCCTCGAAATTTGAC
CATGTGACCAGCAGGAACCAATCAGAACGCTCGAAATCTGTGGAcaggaa
taaacaatcctctACATCTTCAAAGTTTAAAGGTGTCAATTTACCCTTTC
TATAATGATCGTTTTTAGTTTAGATGTTGATCTTATATTTTTCTacgatt
tcaattatttttgacgTCTTTCGTTTTGATATAGAGCTATTGCTTTAAGA
AGCATTCGTTCGATCTTAGGTCTCCAAAACAACTGCGTTTTCAAAAAGCA
CATTCAAGAGATGTGTGGGTTATGTGTGGTATTACTTATTTGAGCTTCTA
AGAACAATATGAGATTTTCTATAATTGAAGCTAATTCTCAGTCCCCGTTA
AAAAAAAG Run BLAST on NCBI transcript from alignment at scaffold_202:853692..856003+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051537 ID=TCONS_00051537|Name=TCONS_00051537|organism=Clytia hemisphaerica|type=transcript|length=2312bp|location=Sequence derived from alignment at scaffold_202:853692..856003+ (Clytia hemisphaerica)
ATTATCAATCTATATTGGATATGGTACGTATGCCGAAAGTTTTCATCTTT
ATTTCTCTTTATTTAGACGACTTGTCCCTTTTGTTCCATGGTTATGCTAA
AGAGGCTGAGACTGAAAAATAGACTGAAAAAAAGACTataaaagttaatt
ttccaTCTTGTGATAAATATGAATGCGAAAGCATACCAGAAATTGATTTT
GTGGTTCGCTGAGGTTTTAGAACGTTCTTGTTTATTGGAATGTcagtttt
atgtttttaaatttttccatTTGATAGGTGGGTGACAAAAGATCAAGTCT
TGGACCCAAACTCCATTTACACAGTGACGGTTCAATTGAGATTTCCCTCA
AAGAGGGTGGATACATCCGGATACGTTATAAAGATCTTGTACGGGCTGAT
CACGAACGTAAAGCACGCTTACGTCAAACCGCAAATACGACCGCAGGCTC
GGCGTTGAGGGCTCAAAACGCCGTTGTTCTTATAGACGAGTCGACAACGT
CAGCGACGACGGACAATACCGGTAAACTAGGCGGTAGTAAAGAGACTATG
TCGGATTCCACCCAACCTGATACCAGTAGGAAAACTAATATGGAATCGAA
AAGGTTCGGTCCGGGTCTGATTAAAAAAGAGAAATCGCCAAACCGAAACA
CCGAAAAAAACGAAACTCTACTAATTACGCAAACTGGAAATTCAAATGAT
TCGACAAGTACTACACACAGTATTAATACAGTAACGAAAGGAGATACGAA
CAACAAAAACAGAAGTGTCAATATAGAAAGTGACAATACTTCAACCACTA
TAAAAGATAAAACGGGCATCAAAACCTCGAACAAAAGTGACGAAAACTTT
ACAGCAAAACAAACTCAAAATCTtgataaaatgaatgaaaatttatcaaC
TCGGAATGATATTAAAGATAATGAGAGGACGCAAAATATGTTAGATGACA
TTGATGTAACAAAGATTTCAAAGcaagaaaatttaaagtttgatataaaA
GGTTCATCAACATCACAAAATTCGAATGAGGTCAATTTGGCAATAAACAC
ATCTAAGGACACGTTGAAATCGAACGATGAAAGCTCTACTAAATCTGGCG
GTAGCAATTCTCTTTCAAATGAAACTCCTAGTAATACTGATAATAGTGAT
TCAGCTCCTGAACATCGAAAGGTAGACAAAAAAGACAGTTCGAAAGGTAT
TTTTTCTAAAGATGAAACTAAAAACTCTACTGCGAATCATTCAGGTTCTg
atataaaaaacaaagaccatACTTCTATGGATGAACGCATTATCAAGGAA
AACTTGAATGAATTGAATGATAGCCCTGTCATGAATGAAAATGAGTTATT
GGATTTTGACGATTCTGATGGTAATGACGAGGACATGGATGATAAATTAT
TGACGGAGGATCAATTGTTAGGTAATGACGACGAGGACGAGGATGGTGTT
GAGATGACGAGTTCTACAGTACAAAGTGATACTTCGAAACCCGAAAAGAG
TGAAAAtcttaatattgaaaagaaagattttgttaGTAAAACTGAGATTA
CCAAAAGTTGTCAAGAGACAACAGAAGTAGACACTGGAATACGTATAACT
CGTATAATAGATACGGAAGTGAAAAAATCTGCAGTTGCGGCTTCCACTGG
AGAACTGAGCTCTAACTCATCAAAAAGTATCGCTCAAGGGAGTGGCACTA
TAGAATCTTCAAATAAAGAACTGAACCGTACAAATATGGACACGCCAGGA
TCAAAAGCAACAGAACAGAAACTCGATAGTAAAACTATGAATAATACAAG
AGTTGATTCACTAGACTTGGATTTTGAAACTGATCAGATAGCTTCTAGTC
CAAATTTAAAATCATGGGAACCTAATTTAAACATAGACTCTACACCAACC
AAAAATCAATCTGACGTCAACAAAAATATCCAATCAGATTCCTCGAAATT
TGACCATGTGACCAGCAGGAACCAATCAGAACGCTCGAAATCTGTGGAca
ggaataaacaatcctctACATCTTCAAAGTTTAAAGGTGTCAATTTACCC
TTTCTATAATGATCGTTTTTAGTTTAGATGTTGATCTTATATTTTTCTac
gatttcaattatttttgacgTCTTTCGTTTTGATATAGAGCTATTGCTTT
AAGAAGCATTCGTTCGATCTTAGGTCTCCAAAACAACTGCGTTTTCAAAA
AGCACATTCAAGAGATGTGTGGGTTATGTGTGGTATTACTTATTTGAGCT
TCTAAGAACAATATGAGATTTTCTATAATTGAAGCTAATTCTCAGTCCCC
GTTAAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051537-exon-scaffold_202-1491911889:853692..853714 | TCONS_00051537-exon-scaffold_202-1491911889:853692..853714 | Clytia hemisphaerica | exon |
| TCONS_00051537-exon-scaffold_202-1510915933:853692..853714 | TCONS_00051537-exon-scaffold_202-1510915933:853692..853714 | Clytia hemisphaerica | exon |
| TCONS_00051537-exon-scaffold_202-1575043694:853692..853714 | TCONS_00051537-exon-scaffold_202-1575043694:853692..853714 | Clytia hemisphaerica | exon |
| TCONS_00051537-exon-scaffold_202-1491911889:853969..856003 | TCONS_00051537-exon-scaffold_202-1491911889:853969..856003 | Clytia hemisphaerica | exon |
| TCONS_00051537-exon-scaffold_202-1510915933:853969..856003 | TCONS_00051537-exon-scaffold_202-1510915933:853969..856003 | Clytia hemisphaerica | exon |
| TCONS_00051537-exon-scaffold_202-1575043694:853969..856003 | TCONS_00051537-exon-scaffold_202-1575043694:853969..856003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:853692..856003 + |
Blast
The following BLAST results are available for this feature:
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