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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051548 ID=TCONS_00051548|Name=TCONS_00051548|organism=Clytia hemisphaerica|type=transcript|length=468bp
CTTTGTTCGTGTTGTGTTTTAACAGCATTGTCAGTAGCAAATGTATTGAA
AAGACCAAATTTTGATGGAAGctgTCCACAACGACACACTTATTTCATGG
GAGCTCACTGTTTCTGTGCTACTGGTACTACCCTCTTCACTCAGTTTGGC
CACATGTTTTGCGAGGCATGTCCAATATACGACCAAGGAGCACGTTTTCA
ATGTGGTGTTTGGCATTCGTATGAatataaaaaagtgaaaaattgctCTA
TATCGAGTAAACACGAAGTAACTTGTATAAAATCGTGTAAAATACAAATT
AACTCAGTACACTTGCATTCCTGTGGCTGCACACCTTATCAATGCTTTTG
TGATGTTCCTTACTTTCGTCATCATTTTTACATGATGTGCATCAGAAAAT
GTTCGCCATGCTTCACACTGTTTGAGAGGCTTTTAAATGGAGATTGTATG
GCATTGCAACCAAATTTG Run BLAST on NCBI protein sequence of TCONS_00051548-protein >TCONS_00051548-protein ID=TCONS_00051548-protein|Name=TCONS_00051548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
LCSCCVLTALSVANVLKRPNFDGSCPQRHTYFMGAHCFCATGTTLFTQFG
HMFCEACPIYDQGARFQCGVWHSYEYKKVKNCSISSKHEVTCIKSCKIQI
NSVHLHSCGCTPYQCFCDVPYFRHHFYMMCIRKCSPCFTLFERLLNGDCM
ALQPNL Run BLAST on NCBI transcript from alignment at scaffold_202:1040537..1041711+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051548 ID=TCONS_00051548|Name=TCONS_00051548|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_202:1040537..1041711+ (Clytia hemisphaerica)
CTTTGTTCGTGTTGTGTTTTAACAGCATTGTCAGTAGCAAATGtaagtaa
aattatttttatcgcAGTAATTCAAATTTGAATACATAGGTCATGAGTGT
GTTTTCTGAAATTATTTAGAAATCTAAAACTCAGGAACAGAAAGGCTTGA
AATTATTCAAAGGcaacctttttttcattttaatgtcTTATTAAGGTTGG
TTTCCACTGTGTGCTAACCTGTGATAGTGATTATCACGTATCACgaaaaa
agtttcatttcaaaacaatttctATGAGATGGAAACCGACCTTTCAGAAA
CATGTTATATGCAATTTGACCTTAACCCTCAAATAAGAGAACTAAGAGTT
TTAAGAAACTTGCTaggtttttttatatatgtAAGTATAAATCATTTTGA
TGTTCAAAAGACGCTTCATTTTGGAAACTTTCTGAAAGTATTTCGTATCT
AAATGTAACGtaaactaaaaagaaaatataaattctTTGTAATTAATTTA
CCTTAAATTTAAAACTAAATGTTTCCCTCGATATTTTCAGGTATTGAAAA
GACCAAATTTTGATGGAAGGTATAAAACATATTATCATTTAAAATTTGTC
TTTAGAGAATGAAACTCTACCAGCATTCTTAatgtttatgatattttata
atatgttaaaattgatgaaaaaaagaaagaaattaatcGCGTTAGTAGCC
CTACTCAGTGTCTCAAGCAACATGACAACATAGTGTTATCATAAGTAGTA
TGTAtctaattttataattttttttcagctgTCCACAACGACACACTTAT
TTCATGGGAGCTCACTGTTTCTGTGCTACTGGTACTACCCTCTTCACTCA
GTTTGGCCACATGTTTTGCGAGGCATGTCCAATATACGACCAAGGAGCAC
GTTTTCAATGTGGTGTTTGGCATTCGTATGAatataaaaaagtgaaaaat
tgctCTATATCGAGTAAACACGAAGTAACTTGTATAAAATCGTGTAAAAT
ACAAATTAACTCAGTACACTTGCATTCCTGTGGCTGCACACCTTATCAAT
GCTTTTGTGATGTTCCTTACTTTCGTCATCATTTTTACATGATGTGCATC
AGAAAATGTTCGCCATGCTTCACACTGTTTGAGAGGCTTTTAAATGGAGA
TTGTATGGCATTGCAACCAAATTTG Coding sequence (CDS) from alignment at scaffold_202:1040537..1041711+ >TCONS_00051548 ID=TCONS_00051548|Name=TCONS_00051548|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_202:1040537..1041711+ (Clytia hemisphaerica)
CTTTGTTCGTGTTGTGTTTTAACAGCATTGTCAGTAGCAAATGTATTGAA
AAGACCAAATTTTGATGGAAGctgTCCACAACGACACACTTATTTCATGG
GAGCTCACTGTTTCTGTGCTACTGGTACTACCCTCTTCACTCAGTTTGGC
CACATGTTTTGCGAGGCATGTCCAATATACGACCAAGGAGCACGTTTTCA
ATGTGGTGTTTGGCATTCGTATGAatataaaaaagtgaaaaattgctCTA
TATCGAGTAAACACGAAGTAACTTGTATAAAATCGTGTAAAATACAAATT
AACTCAGTACACTTGCATTCCTGTGGCTGCACACCTTATCAATGCTTTTG
TGATGTTCCTTACTTTCGTCATCATTTTTACATGATGTGCATCAGAAAAT
GTTCGCCATGCTTCACACTGTTTGAGAGGCTTTTAAATGGAGATTGTATG
GCATTGCAACCAAATTTGCTTTGTTCGTGTTGTGTTTTAACAGCATTGTC
AGTAGCAAATGTATTGAAAAGACCAAATTTTGATGGAAGctgTCCACAAC
GACACACTTATTTCATGGGAGCTCACTGTTTCTGTGCTACTGGTACTACC
CTCTTCACTCAGTTTGGCCACATGTTTTGCGAGGCATGTCCAATATACGA
CCAAGGAGCACGTTTTCAATGTGGTGTTTGGCATTCGTATGAatataaaa
aagtgaaaaattgctCTATATCGAGTAAACACGAAGTAACTTGTATAAAA
TCGTGTAAAATACAAATTAACTCAGTACACTTGCATTCCTGTGGCTGCAC
ACCTTATCAATGCTTTTGTGATGTTCCTTACTTTCGTCATCATTTTTACA
TGATGTGCATCAGAAAATGTTCGCCATGCTTCACACTGTTTGAGAGGCTT
TTAAATGGAGATTGTATGGCATTGCAACCAAATTTGCTTTGTTCGTGTTG
TGTTTTAACAGCATTGTCAGTAGCAAATGTATTGAAAAGACCAAATTTTG
ATGGAAGctgTCCACAACGACACACTTATTTCATGGGAGCTCACTGTTTC
TGTGCTACTGGTACTACCCTCTTCACTCAGTTTGGCCACATGTTTTGCGA
GGCATGTCCAATATACGACCAAGGAGCACGTTTTCAATGTGGTGTTTGGC
ATTCGTATGAatataaaaaagtgaaaaattgctCTATATCGAGTAAACAC
GAAGTAACTTGTATAAAATCGTGTAAAATACAAATTAACTCAGTACACTT
GCATTCCTGTGGCTGCACACCTTATCAATGCTTTTGTGATGTTCCTTACT
TTCGTCATCATTTTTACATGATGTGCATCAGAAAATGTTCGCCATGCTTC
ACACTGTTTGAGAGGCTTTTAAATGGAGATTGTATGGCATTGCAACCAAA
TTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051548-exon-scaffold_202-1491911889:1040537..1040578 | TCONS_00051548-exon-scaffold_202-1491911889:1040537..1040578 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1510915933:1040537..1040578 | TCONS_00051548-exon-scaffold_202-1510915933:1040537..1040578 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1575043694:1040537..1040578 | TCONS_00051548-exon-scaffold_202-1575043694:1040537..1040578 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1491911889:1041077..1041105 | TCONS_00051548-exon-scaffold_202-1491911889:1041077..1041105 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1510915933:1041077..1041105 | TCONS_00051548-exon-scaffold_202-1510915933:1041077..1041105 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1575043694:1041077..1041105 | TCONS_00051548-exon-scaffold_202-1575043694:1041077..1041105 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1491911889:1041315..1041711 | TCONS_00051548-exon-scaffold_202-1491911889:1041315..1041711 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1510915933:1041315..1041711 | TCONS_00051548-exon-scaffold_202-1510915933:1041315..1041711 | Clytia hemisphaerica | exon |
| TCONS_00051548-exon-scaffold_202-1575043694:1041315..1041711 | TCONS_00051548-exon-scaffold_202-1575043694:1041315..1041711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1040537..1041711 + |
Blast
The following BLAST results are available for this feature:
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