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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051549 ID=TCONS_00051549|Name=TCONS_00051549|organism=Clytia hemisphaerica|type=transcript|length=390bp
TAGAATTTCTGAAGATATTAAAGAAACAAAAATCAACGACTCACTTACGA
CTATTAAAGGAGCCTTCTGTCAATTACTTGACATCCTTGAAAGTGGAAAA
ATGGAAGAAGTTTGTGAGAAAATATACGAAGAGAACATGGAACAATACCG
CAGAGATAAACTTTACCTTTCAAGCGGTGAAAGAGTATTGGAACATGTAG
GAGCCTTTTTCCCACATTACACGGTCGATCAATTTGTAAAAGATTTGTTG
GACGTTGGTGTAGAACTCAgacatattcaagactttgttaACAGTTTACC
ATCACAAACAAATTCAGAAGACACTGATGCTTAAAAgattatgaaaaaaa
tgatgCATTCAAAAACAGGACACAACACTTTATCAGATAC Run BLAST on NCBI protein sequence of TCONS_00051549-protein >TCONS_00051549-protein ID=TCONS_00051549-protein|Name=TCONS_00051549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
RISEDIKETKINDSLTTIKGAFCQLLDILESGKMEEVCEKIYEENMEQYR
RDKLYLSSGERVLEHVGAFFPHYTVDQFVKDLLDVGVELRHIQDFVNSLP
SQTNSEDTDA Run BLAST on NCBI transcript from alignment at scaffold_202:1045094..1046425+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051549 ID=TCONS_00051549|Name=TCONS_00051549|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_202:1045094..1046425+ (Clytia hemisphaerica)
TAGAATTTCTGAAGATATTAAAGGTACGAGcttgataatttttaaaacta
atAGCCAACGAGCCTTATCCGACTATTTTATTAGTTGTTTACGGAAAGCC
GTGTTTTAAATTAACCAAATAATATCAAACCAAATGACTGTTTTGAAAGA
AAGCTAACCATCATTATTCTGTATAACCAGGTAGTTTTCAAAATGTCGCT
TAAGACACTCAAGAGTGACCAGAGCTGTTGCTCCACTTTATAATTAGCGT
TTTGTTACTGGAAGGTAAAATGATGTAATCTTAACTTGGGTACATCAAGA
ATTTCAACATTCCTACTCGGGTAAATTCGAACCAGATTCTGTGTTGTAGA
ATCTTCTCAAAGAAtcaatactttaatcgtagaaattttagcgagactaa
ttttagcgttttagctagttttccctattttcgctaaaataaatctccct
aaaacacgccgaatcgccagatcgctaaaatttatccgcgcgaaatttct
ggttatattgccttgatacatttttatcaataagaaGGGTTTCaatgcaa
agaaatgctagaaaacgaattcagtcgctaaaatttatccgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgtga
ttcgctaaaataaatccaaaaaaaatcaagatttttctgGCTCGCTAATa
tgcgctaaaattagtctcgctaaaatttctacgattaaagtatctGTTTT
TATCCAATCATTCAGAAACAAAAATCAACGACTCACTTACGACTATTAAA
GGAGCCTTCTGTCAATTACTTGACATCCTTGAAAGTGGAAAAATGGAAGA
AGTTTGTGAGAAAATATACGAAGAGAACATGGAACAATACCGCAGAGATA
AACTTTACCTTTCAAGCGGTGAAAGAGTATTGGAACATGTAGGAGCCTTT
TTCCCACATTACACGGTCGATCAATTTGTAAAAGATTTGTTGGACGTTGG
TGTAGAACTCAgacatattcaagactttgttaACAGTTTACCATCACAAA
CAAATTCAGAAGACACTGATGCTTAAAAgattatgaaaaaaatgatgCAT
TCAAAAACAGGACACAACACTTTATCAGATAC Coding sequence (CDS) from alignment at scaffold_202:1045094..1046425+ >TCONS_00051549 ID=TCONS_00051549|Name=TCONS_00051549|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_202:1045094..1046425+ (Clytia hemisphaerica)
AGAATTTCTGAAGATATTAAAGAAACAAAAATCAACGACTCACTTACGAC
TATTAAAGGAGCCTTCTGTCAATTACTTGACATCCTTGAAAGTGGAAAAA
TGGAAGAAGTTTGTGAGAAAATATACGAAGAGAACATGGAACAATACCGC
AGAGATAAACTTTACCTTTCAAGCGGTGAAAGAGTATTGGAACATGTAGG
AGCCTTTTTCCCACATTACACGGTCGATCAATTTGTAAAAGATTTGTTGG
ACGTTGGTGTAGAACTCAgacatattcaagactttgttaACAGTTTACCA
TCACAAACAAATTCAGAAGACACTGATGCTTAAAGAATTTCTGAAGATAT
TAAAGAAACAAAAATCAACGACTCACTTACGACTATTAAAGGAGCCTTCT
GTCAATTACTTGACATCCTTGAAAGTGGAAAAATGGAAGAAGTTTGTGAG
AAAATATACGAAGAGAACATGGAACAATACCGCAGAGATAAACTTTACCT
TTCAAGCGGTGAAAGAGTATTGGAACATGTAGGAGCCTTTTTCCCACATT
ACACGGTCGATCAATTTGTAAAAGATTTGTTGGACGTTGGTGTAGAACTC
AgacatattcaagactttgttaACAGTTTACCATCACAAACAAATTCAGA
AGACACTGATGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051549-exon-scaffold_202-1491911889:1045094..1045116 | TCONS_00051549-exon-scaffold_202-1491911889:1045094..1045116 | Clytia hemisphaerica | exon |
| TCONS_00051549-exon-scaffold_202-1510915933:1045094..1045116 | TCONS_00051549-exon-scaffold_202-1510915933:1045094..1045116 | Clytia hemisphaerica | exon |
| TCONS_00051549-exon-scaffold_202-1575043694:1045094..1045116 | TCONS_00051549-exon-scaffold_202-1575043694:1045094..1045116 | Clytia hemisphaerica | exon |
| TCONS_00051549-exon-scaffold_202-1491911889:1046059..1046425 | TCONS_00051549-exon-scaffold_202-1491911889:1046059..1046425 | Clytia hemisphaerica | exon |
| TCONS_00051549-exon-scaffold_202-1510915933:1046059..1046425 | TCONS_00051549-exon-scaffold_202-1510915933:1046059..1046425 | Clytia hemisphaerica | exon |
| TCONS_00051549-exon-scaffold_202-1575043694:1046059..1046425 | TCONS_00051549-exon-scaffold_202-1575043694:1046059..1046425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1045094..1046425 + |
Blast
The following BLAST results are available for this feature:
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