TCONS_00051554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051554
Unique NameTCONS_00051554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051554 ID=TCONS_00051554|Name=TCONS_00051554|organism=Clytia hemisphaerica|type=transcript|length=1779bp
tttaaattttctgtttttgcaAAGTACGCCGTTCTTTAAAACAGactttg
atgttttcaatcaGCTCCAAGGTGGATCAACGATCACTAACCATGTCGCT
AAGCAACCACGATCGCCGGATGAGTGATCAATCATCCGGTAACAATACGC
GAACCTCATCACTCAAACATCAACATAACAATCCAAGAGAACTGAAAGTT
GAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAGTACAGAAACGGT
CAACGACACTCAAGTCATTTACGTTTATTGTTCACCACGTTTGAAACATA
CGTTAATCTTTATAtttcgttttgttttgattacgTACTGCGTTGCCGTT
CCCGTATTTGTGTATCTTCTACATCAAAAAAGTTCGGTTAATATtgcgaa
aattgaaaagtttgaaactgattttcaaagacatttacataaaatttcag
aaaatgatAAACTAAAGAATGAACAGTCTGCACCTTCATCTTCAACGTCG
ACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGAATTCGACAAGTC
TTATAAACAACCAGGAATGAAGGatcaagattttcaaaagaagctGAAAG
AATTCAACAATACAGTTCAGAAATATAGactgaaGCTTTCCGAATTGGAG
CCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACATATCAGCACCAA
TTTAGATAGCACTGATTGTAACTGTAAAAAAGAAACAGATTCCTCTGATG
GAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGTAAAGCAAGGA
CCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAAAAT
TGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTTCCAGAG
GACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCAGGTGCT
GATGCAAGCTGTgattccaataaaaacaacaaagatttgaaaacaactTA
CATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAGATATACT
CAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCAAC
TATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAGTG
GTGGTGGTTCTAATTATCTGTGTCTCCCAGAGACACCATCATACTCTAAA
GtacaaaaatttaaacaaagtGATGCGTCTGAAATTGACATTCAAATTGG
GAATGATATATTCTGTTCAGTTTGTGAGAGAATTGGTAAAAGTAGTACTA
TTATGTATCCAGCATCGAATCTATGTCCTGAGGGATGGGAGTTAGAATAT
ACAGGAACCCTGGTCACGCAGAAACAAACTAAACGAACGGAGTATGTTTG
TCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAATCTGGGTATGA
CAACAGTTTCAGAACAAGCATGTAAGATATTGAACTGTGGACCGTATGAg
gcgaaaaagaatttgaattgcGCTGTGTGCACGCAATAAATTATTTTACG
AATGAATGCGTGAATGATGGAAAACATATGTTTTGCACAGAGAAAAACAT
CGGCCAGAGCTGCAAGATGTTTGGAAAatttctctttatttttttatatt
aatgTAATATAGTCAAAGTATAGATTTAAGTCAAATTATTTGATTATTTA
AGAGAAAAATGTATAAATTAGTAGATATTTTAAGGTATTGTCCAAAGAAA
TTCTTGAACTTTATTATTTAGTATAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1064629..1071280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051554 ID=TCONS_00051554|Name=TCONS_00051554|organism=Clytia hemisphaerica|type=transcript|length=6652bp|location=Sequence derived from alignment at scaffold_202:1064629..1071280+ (Clytia hemisphaerica)
tttaaattttctgtttttgcaAAGTACGCCGTTCTTTAAAACAGGTATGT
TTTAATGCCTTATGTCgtaaaagaaattatttatAAGCGGTGTAAATTTC
TTGCTCATTGTTAGCAATTTGTGCCCTGTGTAAGAGGTTTGGAGATTCAA
CTATGACTTATACCAACTAACAAAAGTATTCAAAGATCTTCTtaagaaaa
tttagaatttacaaatatcaatcaaatttttaaagTGGTGTAAAAAACTG
TTATCTTGAAAGTTAGGCCACGGATTTAATGACATTGGAAAGCTATTTCT
ATGCTATTCCCAAAAGAATCAGGGCCATGCCCGTTTTATGGGGGGTGGCA
CTCATGTTGTGGCGACCtttatttaataatttaatGGTACAATTTTCAGT
TTGTGTAATGTAACGGTCAGGCTGTGTACTGCAAATATCGTAATGAGAGA
AAGTGCaatgtaagggtccgattttgagacccaaaattttgtctgtACAT
ACGGTAGTTTTCAGGTAGTGCGCCCCTTAATGATCAGATACTATAGCCAA
TATAGTTTTGGCCTTGGTATTTTGGTCTCTTTGGTCGAAGGGTTAAAAGT
CTTGCCAATGAATAGCCAGAGAAATGATGGATTCAATAATTTACATATTG
TATATAAAAAACTCATGCACTTTCAGACAGTTGCATCATAGTAGATGAAG
AATTGCCTTTTGTCTGATGTTCCGAGCAAGGCGTCGTACAGAGCAGTCAA
ATATTAACACAAACTGGAATAATGTCCCTTTATGCCCCTTTTTGTTCTCC
TGTCGAGTGAATTCCTTAAATACttcatttagaaatttacaatcaaaaat
gttcatttcccttaataatttttgatagaattccTTTATTAAATTTGCTT
CCCAAAACGTTATAAATTATTCAACTCCAAGTTAACTTTTTACCAAACTt
tgattcaaaaactttctccCATATTATGAGAAACAATGAAAGAAATAGAC
AGTTTATCTGTAAAAACAGTGGGGGAGCAAACTTTGAATATTTCTTGTGG
CTAAACTTGGAAACTGAGGTTTTTAAAGGACTTTTTAAACATCTGGGTAT
TTATTTCATTCTGTCATAATCTCACGAGGATGTTCAGTGCGGTACCCAAC
TTTCACCGATTTTTTCGTTCAATATGGTTGCATATGACGAGATGGTTAGT
CTCGAATTTTCGTTTAACTTTTAATTTAACAATGTTCTCAAAACTATGAT
TGTTCGACCGGTGTCATAGTTCAGGAATGAACTAAAAAACTTTCTTGTAT
TTTCTAGCGTTCGGCAGTATGAGAATCCGTTTTTTAACATAAATCATACT
CTTTTTTTCGAATACACTTTGAGTCGATATAAACAAGACTAAAAGTTAAA
CTTTCAATTGTCACAAGAGGTGGAGTAACCTTTTAAATGCATTTCAGTAA
ACTTTTCTATAGTCTTAAAATAGAGGGTTGGATTTCATTTGATTATTAGG
TTAATCACATTTTGTCTAGTAATTGATAGCAATGGGTTAATTAATCAAAA
GAAGTTAAGCGATGATAACAGTTCAGTGTTTTTGATCACTCACGTTTTGT
AATTTTGGCTGAATTTTggtttcttgatttttatatTGACTAGTTTTTGT
AATTGGCTGGTACTGTAGGATGGCTGTAGGATGCTCTTAATTTAAACTCG
GTTAATAAAGATTACATCAGATTTAAAAGCATTCTCCTCAAGACTCAAGT
GCAGCCAAATTTTccaacaaaacattcgaatgtaatgACTTCTCTTAATC
TTTTAAAATCTGTGTATACTTCTATTTTTCCTTATATATTTAAGACTTTT
GTCAATCGACGAAGCTGACATTTTCAAGGAGCTTATTAATTCCTTTCATT
TAGactttgatgttttcaatcaGCTCCAAGGTGGATCAACGATCACTAAC
CATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCATCCGGTA
ACAATACGCGAACCTCATCACTCAAACATCAACATAACAATCCAAGAGAA
CTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAGTAC
AGAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCACCACGTT
TGAAACATACGTTAATCTTTATAtttcgttttgttttgattacgTACTGC
GTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTTCGGTTAA
TATtgcgaaaattgaaaagtttgaaactgattttcaaagacatttacata
aaatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACCTTCATCT
TCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGAATT
CGACAAGTCTTATAAACAACCAGGAATGAAGGatcaagattttcaaaaga
agctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaagtaattt
ttttgaatttaagtGAATTTAAGTGATcaagatttcaaattaaaacgGTT
ATCATTAACTGTTACCATTTTAAAATCAGTAAGGAAAATACCCCCTTTAT
AATGACCCCCCCTGAGATCAATGTTGTGAAGGTTTGAGCTGTTACAGAGA
AGTTGGTTTGCTTTAAAACATAGATTTTTTAGGGGTACCCCTCCCCTTCT
TAACTTTGCTGTCAATATATTAACTGACAGATTGTAGTAATTTTAAACCT
TAGTCACAATTATTTGGAATTCTAGTCTTTATTGAGCCTTTATTagccaa
attcaatattttcttcATTCAGGCTTTCCGAATTGGAGCCAGCTGAGAAA
TGGTTACAAGAAATCTACATGAAACATATCAGCACCAATTTAGATAGCAC
TGATTGTAACTGTAAAAAAGGTAAAAGATATTATCACTTAACGAACTTTC
AGGCACCTTTATATATTGGACCCTTATTTAACGCCGGTTTTTTATGCCGC
TGCCTGATTTTAAGCTTAGATCTATTATAGCCGTAATTGAACAACGAAAG
CTGAAAGCTATTCTCAATATCATTTGTGAGTTAGCtgttaaaagttttat
tgaaaacaaCTAAAATTCTTGCAGTTTAGAAAATGGGTCGAAGAGTGGTT
AATTTTCATCTTACTAGGAAAAAGATTTAATGATAACACAATATTTTATC
CCTTTATTACCACCAGGCAATAAATTAAGGCCTGCGCAGATGCATCCAAC
ATTTGATCTAAGATTTCGAATTCTTTGTTGGACGAGATGTTGGATGAAAG
TCACGAAAAGTTggatgaaaagtcatttgcgcaaaaatgtcaaaaaaatt
ttgatccaACATGATTACGCAAATACCAAAACATGAaagcaacatgaaag
tggcgtCAATCTCATAAAAATGTTAGATGAAATGTTTGGTAGCGATCAAA
CTTTATACAATACGTTTTCCAACATTATTATTAAAAAGTTGCGATTTTAT
GACTTGCGCAAATGAacccaacatttcatccaacaaatGTTGAATCCGAT
ATTGGATgcatttgcgccggcctttaATGTCAACCAGGGTCGATAGTATA
TTACTTCTGGTCTGTCCAGCATCAGTTAATTATATCAACCATGCAcgttg
aaatgaaaatattgattgTTCACAGCAAATTTTATCATGCATTAATCTCT
GCTTTCACGTTTCAGAAACAGATTCCTCTGATGGAAAAGAATGTGCATCG
AAAGGTACTGAGAATTATTTCCTTATTTCCGAGAACATCCTGTTTCATTC
ATAAGGACCAGCTTATGCTGGCGAAGATATTCTTCTTATGGAGCAAAAAT
CACccaataaatttaaaattgtatATTGTCTCCTACAACCTATCCTTCAT
TCCAGGACATAATTGTAGAAACACATGCTTGTAAAATCTCCTTCCACCTA
AAGGGGACAGAGTAAAAGTGTATTTTTGAGGGGTTGCTTCATTTTCCCCG
ATTGTAGTTTGTTTCATGGGCATATATTTTAACCTCATTTTATAGAATGC
GATTGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGG
TGAACAAGGTGATCCTGGAAAAATTGTAAAGgtaatgatttttgaaatta
ttgaaatCATTCCTTTTCTGTTTTGAAGTGACGCTTCTCATACGGTACCG
AATATCTTACCACATCTACATCTTATTTTATGCAACGAGCTTCCCTATCC
GTTTTACTGGGGACTACCTATAATGGAGCGTAACTTCAACGTTCGTAGCC
GAAAAAGCCTAGAGAAGCTCAGTGCTAAAGATGTCTGTATATATTTGACA
TTTAGTCAGACGGAATTGAATGACATTCAAATCACAAGTGTAATCGTCCG
CCATACCacgtattcaatttttttaaacaggtgtcaagtttttgtttgaa
ctattcttcatttttactgttttttaaatatttcctcagGTACCGACGCT
GAGAGGTCCTCAAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTG
GGGATATTGGTCCTCAGGGAAAACCAGGTAAGAAGCCAACCTTCCTCAAA
TTAAGGAATTTATGATCATTGTTGCCAAAACCATATCATATTCATTTTCC
CATATTATGTCTTCCGAAAGGTGAAACAAGAAAGATATGTTAAAATGTAA
CCTGAAGTTCCTGGCACTGTTTACTTTGTTTCTAACGACCCTGCCGATGC
ACCGGACTGATTCGTGTGTGGTCCGATATTTatattgtccggtggtaaaa
tgTTTTCCGTGTCCGGTGCTTCCGTAACTCCGGTGTGTTGGTTGCTCCTG
TTCAGCCTTTACCTTtaaggctggtctccactttcgcgtgaAATAGGCGA
CAGTTTTTGCGAGAATAAAAGATTACGTTAtgaaaaagtttcgcgcgaac
aaaaaaaaagttgaaggatgttctacttttttcatccgttacgtcaattt
cgaccaatagaattgcttcatttttgaaCCGACCAATggccttacaaaaa
cgtcaaaaagttttcactcgtgtcgcgcgaaagtggagatcGGCCTTTAT
ACTACTCGTTAATTTATGCTTCAATGTATGTTCATAGGTGCTGATGCAAG
CTGTgattccaataaaaacaacaaagatttgaaaacaactTACATTCGTT
GGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAGATATACTCAGGTTTG
TTGACAAAAACCTTCCTTTTAAAAGATATTCCATATTAATATTGTTGTAT
ACGTTTTTAATTAATTGtatcttatcggggaaaaaagaCCAGGTTTGATT
Acattatcggccctttttacgccggcccttattgacgttatttttgggct
cgtggcgtaataagggccggtgttaaattagggccggcgtaaaaagggcc
gataaggtagtcgGATGAAAACTTGGACGGGGAAAATTCGTCAATTAGAg
acattttcgtcactttcatCCGCCATCAAATTCTGCTTTTGATACTTCTG
ATTACTTTTGTACAGTTGTTTAACTTTGTCAAGACCAACTCCGAAGTTTG
ACTTGGCCGACCAAACGGCCTTAATTTTTATGCAGTTAAAGAGTCCCTAA
GGCGCCAGGGAAGTCAACgaaggctctaataagcataGAAAGCATTAGCA
tagaaaaagtgaattttaattAAGAAAGAGGCATCATTTGGAGAGGTAAA
CACACGTATGATTTCATTCACTAAAATGTTTCGTATACTGAGATAGTCAA
TTAATCTTTAGcgagttaaaccatagtgtttttttacaagattcTGACAT
CGtggtaaaaaactaaaaattgtttatatcgacgaaatttttaaattttt
aaatttttaaaacgttttattCATAGGATACATGGGTGGCGCTTCAAACC
GAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGG
TGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCTCC
CAGAGACACCATCATACTCTAAAGtacaaaaatttaaacaaagtGATGCG
TCTGAAATTGACATTCAAATTGGGAATGATATATTCTGTTCAGTTTGTGA
GAGAATTGGTAAAAGTAGTACTATTATGTATCCAGCATCGAATCTATGTC
CTGAGGGATGGGAGTTAGAATATACAGGAACCCTGGTCACGCAGAAACAA
ACTAAACGAACGGAGTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAGCT
TTGGAGATCGAATCTGGGTATGACAACAGTTTCAGAACAAGCATGTAAGA
TATTGAACTGTGGACCGTATGAggcgaaaaagaatttgaattgcGCTGTG
TGCACGCAATAAATTATTTTACGAATGAATGCGTGAATGATGGAAAACAT
ATGTTTTGCACAGAGAAAAACATCGGCCAGAGCTGCAAGATGTTTGGAAA
atttctctttatttttttatattaatgTAATATAGTCAAAGTATAGATTT
AAGTCAAATTATTTGATTATTTAAGAGAAAAATGTATAAATTAGTAGATA
TTTTAAGGTATTGTCCAAAGAAATTCTTGAACTTTATTATTTAGTATAAA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032661XLOC_032661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051554-exon-scaffold_202-1491911889:1064629..1064672TCONS_00051554-exon-scaffold_202-1491911889:1064629..1064672Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1064629..1064672TCONS_00051554-exon-scaffold_202-1510915933:1064629..1064672Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1064629..1064672TCONS_00051554-exon-scaffold_202-1575043694:1064629..1064672Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1066532..1067121TCONS_00051554-exon-scaffold_202-1491911889:1066532..1067121Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1066532..1067121TCONS_00051554-exon-scaffold_202-1510915933:1066532..1067121Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1066532..1067121TCONS_00051554-exon-scaffold_202-1575043694:1066532..1067121Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1067451..1067548TCONS_00051554-exon-scaffold_202-1491911889:1067451..1067548Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1067451..1067548TCONS_00051554-exon-scaffold_202-1510915933:1067451..1067548Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1067451..1067548TCONS_00051554-exon-scaffold_202-1575043694:1067451..1067548Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1068344..1068382TCONS_00051554-exon-scaffold_202-1491911889:1068344..1068382Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1068344..1068382TCONS_00051554-exon-scaffold_202-1510915933:1068344..1068382Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1068344..1068382TCONS_00051554-exon-scaffold_202-1575043694:1068344..1068382Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1068674..1068759TCONS_00051554-exon-scaffold_202-1491911889:1068674..1068759Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1068674..1068759TCONS_00051554-exon-scaffold_202-1510915933:1068674..1068759Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1068674..1068759TCONS_00051554-exon-scaffold_202-1575043694:1068674..1068759Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1069118..1069205TCONS_00051554-exon-scaffold_202-1491911889:1069118..1069205Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1069118..1069205TCONS_00051554-exon-scaffold_202-1510915933:1069118..1069205Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1069118..1069205TCONS_00051554-exon-scaffold_202-1575043694:1069118..1069205Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1069766..1069873TCONS_00051554-exon-scaffold_202-1491911889:1069766..1069873Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1069766..1069873TCONS_00051554-exon-scaffold_202-1510915933:1069766..1069873Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1069766..1069873TCONS_00051554-exon-scaffold_202-1575043694:1069766..1069873Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1491911889:1070555..1071280TCONS_00051554-exon-scaffold_202-1491911889:1070555..1071280Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1510915933:1070555..1071280TCONS_00051554-exon-scaffold_202-1510915933:1070555..1071280Clytia hemisphaericaexon
TCONS_00051554-exon-scaffold_202-1575043694:1070555..1071280TCONS_00051554-exon-scaffold_202-1575043694:1070555..1071280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1064629..1071280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85136	8.92181e-10	0	0	1.00911	0	0.763663	1.35384e-06	0	3.76222e-09	1.3431e-09	0.518634	4.04231	5.77092	1.4251	0.709587	1.02435	6.16473	2.89635e-05	3.62258	4.31901	1.93053	4.54821e-10	2.84273	3.04202	2.80086	0	1.85435	0	0.172015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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