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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051592 ID=TCONS_00051592|Name=TCONS_00051592|organism=Clytia hemisphaerica|type=transcript|length=2975bp
TGCAAACCCAAATAACCGATATTAAGAAAGGCTGTGCTGAAACTAAGCTT
GTCAACAAGAACCTTGCAAAAACTTGTACTGACCTACGTACAGAACTGGA
GAAAGAAAAATCTGCTCTAAATGATCTGCAGCAATACAGTCGTAGGAATA
TGGTAGACATTCATGGTATCCCTCGGTTGAATAGAGAGGATACTGACAAA
CTAGTTACGGTTCTTGCTGGGAAAATGGGTTTAACTCTGCTGAAGTCTGA
CATTGAAATCAGTCACCGGACACATCCAGGAGCTAATGCACCGATCATTG
TCAAGTTCTTATCCCGTGGTACTAGAAACgcattttttgataaaagaaaa
aatttgagaaatattAGAGTCAGAGACCTTGGTGACCATTTTGGAGATTG
TGGACATAAGATTTACGTCAATGAAAGTTTAACAACacaaaatgttgata
ttttcaaaGCGGCAAAGAATAAGTTTGGAAGAAATAACAAATATATTTGG
ACACATCATGGAATTACTTTTATGAAAAAAGATGATCGATCTGATAAAAT
CATGTTGAAATCAATGACAGATGTTGTAGGATATGTTACAAATTCCAATA
ATAACAATATAGCTGATACAGATCAAGAGGTAGACCCTAATAGAACTCTT
TAATGGTTGACATTATAATAGAGGATTATGAAAGCTCGACTTGTCACACT
TGTCTGAAACTGTGTCTTGATAACTGTATCTTTTGTGACCTTTGTAAAAC
CTGGTTGCATCCTAAATGTATCAAAATGACTCAATCTCAATTTAGGAAAC
AAGGAGCTTCTTCAATCCCTTTTTTCTGCCAAAAGTGTATATCAAATGCC
TTACCTCTCACTTACATAACTAACTTCCAACTACTTAACCATCTGTCCAT
CACCACTAAGAAGCTAAAACTCTGTGTTAAATGCAATAAATCCTCTTCTA
AAGATGACATGGTGTATTGTATCACAAACAAACATCATATTCATAAAACA
TGCAATAATTTCACTAAAAATGACCCAGTTAAAAGCATATGGTGCTGTAA
TCAATGTTATAAATTTCCTTTTCCTGATCTTTGTATTGATGAATTAATAG
CTGAGTCAGTAACATGTACTAAAAACCCTAACCGTAAACTTAAAATTGAT
ATTAACAATAAACTAACAATATTCAATAAACAACTACCTTCTCTGTCAAT
GCCAACTGACAACGAGGGAAATAacgaaaatctaaatttcaaatattata
atgttaaagattttcatgatttgttAAGGATTTCTGACCTTTCTAACTTA
TTTTCTGCATTCCATACAAACATTAGATCCTACAACAAGAACTTTAATGA
ATTATCTGCACTAATAACTAATCTTCCAACTAGTCCTGACATTATAGGTT
TATCAGAAACCTGGGACACACTGGATAGCCCTGCAAATCTTCAAGATCTT
CAAGGTTACCACAAGGCAGAGAGGGTTGAAGGTTCTTCACAGAATGGTGG
TGTTGTAATGTACATCAAGAAAGATCTATCCTTCTCAAGAAGAGATGACC
TATCAGGTAAGCAAACTCATTCTGAAATACtctttgttgaaattgaaaat
acagATAGAAATATCTTGGCTGGTGTAATCTACAGACACCCTAGTACTAA
AGTTCACGACTTCATAGATACTCTTAAAAATACTATTTCAAAATTGAcaa
gagaaaacaaaacaattttactGATGGGAGATTTTAACATAAATTTACTA
CGAGTACATGACCATAAAGAATCTGAGAGATTTCTAGACACTATGCTAGA
TAACTTCATCTTACCCTGCATCTCTCAACCTACCAGATTTGATAAAAACA
TGAATTGTACTTTGATTGACAACATATTTCTAAACACTATGAATGCTGAA
TGTGTCAGTGGCAATCTTATGTCCTTAATTTCAGATCATTTACCTAACTT
TGTTCTCTTTCCTTTCAAGAAGAATAAGAAAACTAACAACAATAGACCAA
AAGTAcgtgatttcaaaaatttcaaaatagacaAACTTAGAGATAACTTT
AATTCCAttaatttcctgaaaaaaatcaaaactatgAACGACAGTGATCA
AATGTATTCTTTTTTTCATAACGGTATGGACTTATTATTTGAAATGCACT
GTCCACTTAAAACAATGTCCAAAAAAGAACTCAAAAACAAACGAAACCCT
TGGATTGACAAAGAAATCTTAGACAAAATGAGTGAAAAAGAAATCTTACA
CTCAGAACTTCTAAAAACTGGTGACTTAGAAATCTCACAAATGTATGAAT
cccttagaaaaaaaattaatcatcttattcgaaagaaaaaattcatttac
CAAAAAGCcagaatatcaaaattaaaaacagaCATTAAAAAATTATGGAA
AGAAATCAACATCATTACTGGTAGATCCAAAAGCAACAGCATCCCATCAT
CAATGTTCTACAACGACAAAAAAATCTCATCTAGCAGAGAAATCTCaaat
aaattcaattttcactacTCAAAGGTTGCTGAAAATCTCATTGAGAAAAT
GAAACCACCTCAAAATTCACTTACACACTTAAACTTTATTAATAAGACTT
TTTACTTTAACTCTATTAATCAGTTTGAAGTAATGGATCTCATTAACTTG
TTAGACGAGAAAAAGTCTGAAGACATTTATAACTTTCCGATCTCTGTAAT
CAAACAAGTAAGTGACCTGATCTCTCCAGTTTTGAGTCATATCATCAACC
ATTCGATTACCACTTCAAATTTTCCAAGTAagttaaaactttcaaaagta
ATTCCTCTTTTCAAAAACGGTGCTAAGAATGACATcaaaaactacagacc
aatATCCATATTGCCAATTTTTGacaagattttcgaaaagattGTTCACA
AACgtttaatgaaatttttcactGATTTCGAAATATTAGCTCCAAACCAA
tatggttttcaaaaatctaaatccA Run BLAST on NCBI transcript from alignment at scaffold_202:74683..77657- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051592 ID=TCONS_00051592|Name=TCONS_00051592|organism=Clytia hemisphaerica|type=transcript|length=2975bp|location=Sequence derived from alignment at scaffold_202:74683..77657- (Clytia hemisphaerica)
TGCAAACCCAAATAACCGATATTAAGAAAGGCTGTGCTGAAACTAAGCTT
GTCAACAAGAACCTTGCAAAAACTTGTACTGACCTACGTACAGAACTGGA
GAAAGAAAAATCTGCTCTAAATGATCTGCAGCAATACAGTCGTAGGAATA
TGGTAGACATTCATGGTATCCCTCGGTTGAATAGAGAGGATACTGACAAA
CTAGTTACGGTTCTTGCTGGGAAAATGGGTTTAACTCTGCTGAAGTCTGA
CATTGAAATCAGTCACCGGACACATCCAGGAGCTAATGCACCGATCATTG
TCAAGTTCTTATCCCGTGGTACTAGAAACGCATTTTTTGATAAAAGAAAA
AATTTGAGAAATATTAGAGTCAGAGACCTTGGTGACCATTTTGGAGATTG
TGGACATAAGATTTACGTCAATGAAAGTTTAACAACACAAAATGTTGATA
TTTTCAAAGCGGCAAAGAATAAGTTTGGAAGAAATAACAAATATATTTGG
ACACATCATGGAATTACTTTTATGAAAAAAGATGATCGATCTGATAAAAT
CATGTTGAAATCAATGACAGATGTTGTAGGATATGTTACAAATTCCAATA
ATAACAATATAGCTGATACAGATCAAGAGGTAGACCCTAATAGAACTCTT
TAATGGTTGACATTATAATAGAGGATTATGAAAGCTCGACTTGTCACACT
TGTCTGAAACTGTGTCTTGATAACTGTATCTTTTGTGACCTTTGTAAAAC
CTGGTTGCATCCTAAATGTATCAAAATGACTCAATCTCAATTTAGGAAAC
AAGGAGCTTCTTCAATCCCTTTTTTCTGCCAAAAGTGTATATCAAATGCC
TTACCTCTCACTTACATAACTAACTTCCAACTACTTAACCATCTGTCCAT
CACCACTAAGAAGCTAAAACTCTGTGTTAAATGCAATAAATCCTCTTCTA
AAGATGACATGGTGTATTGTATCACAAACAAACATCATATTCATAAAACA
TGCAATAATTTCACTAAAAATGACCCAGTTAAAAGCATATGGTGCTGTAA
TCAATGTTATAAATTTCCTTTTCCTGATCTTTGTATTGATGAATTAATAG
CTGAGTCAGTAACATGTACTAAAAACCCTAACCGTAAACTTAAAATTGAT
ATTAACAATAAACTAACAATATTCAATAAACAACTACCTTCTCTGTCAAT
GCCAACTGACAACGAGGGAAATAACGAAAATCTAAATTTCAAATATTATA
ATGTTAAAGATTTTCATGATTTGTTAAGGATTTCTGACCTTTCTAACTTA
TTTTCTGCATTCCATACAAACATTAGATCCTACAACAAGAACTTTAATGA
ATTATCTGCACTAATAACTAATCTTCCAACTAGTCCTGACATTATAGGTT
TATCAGAAACCTGGGACACACTGGATAGCCCTGCAAATCTTCAAGATCTT
CAAGGTTACCACAAGGCAGAGAGGGTTGAAGGTTCTTCACAGAATGGTGG
TGTTGTAATGTACATCAAGAAAGATCTATCCTTCTCAAGAAGAGATGACC
TATCAGGTAAGCAAACTCATTCTGAAATACTCTTTGTTGAAATTGAAAAT
ACAGATAGAAATATCTTGGCTGGTGTAATCTACAGACACCCTAGTACTAA
AGTTCACGACTTCATAGATACTCTTAAAAATACTATTTCAAAATTGACAA
GAGAAAACAAAACAATTTTACTGATGGGAGATTTTAACATAAATTTACTA
CGAGTACATGACCATAAAGAATCTGAGAGATTTCTAGACACTATGCTAGA
TAACTTCATCTTACCCTGCATCTCTCAACCTACCAGATTTGATAAAAACA
TGAATTGTACTTTGATTGACAACATATTTCTAAACACTATGAATGCTGAA
TGTGTCAGTGGCAATCTTATGTCCTTAATTTCAGATCATTTACCTAACTT
TGTTCTCTTTCCTTTCAAGAAGAATAAGAAAACTAACAACAATAGACCAA
AAGTACGTGATTTCAAAAATTTCAAAATAGACAAACTTAGAGATAACTTT
AATTCCATTAATTTCCTGAAAAAAATCAAAACTATGAACGACAGTGATCA
AATGTATTCTTTTTTTCATAACGGTATGGACTTATTATTTGAAATGCACT
GTCCACTTAAAACAATGTCCAAAAAAGAACTCAAAAACAAACGAAACCCT
TGGATTGACAAAGAAATCTTAGACAAAATGAGTGAAAAAGAAATCTTACA
CTCAGAACTTCTAAAAACTGGTGACTTAGAAATCTCACAAATGTATGAAT
CCCTTAGAAAAAAAATTAATCATCTTATTCGAAAGAAAAAATTCATTTAC
CAAAAAGCCAGAATATCAAAATTAAAAACAGACATTAAAAAATTATGGAA
AGAAATCAACATCATTACTGGTAGATCCAAAAGCAACAGCATCCCATCAT
CAATGTTCTACAACGACAAAAAAATCTCATCTAGCAGAGAAATCTCAAAT
AAATTCAATTTTCACTACTCAAAGGTTGCTGAAAATCTCATTGAGAAAAT
GAAACCACCTCAAAATTCACTTACACACTTAAACTTTATTAATAAGACTT
TTTACTTTAACTCTATTAATCAGTTTGAAGTAATGGATCTCATTAACTTG
TTAGACGAGAAAAAGTCTGAAGACATTTATAACTTTCCGATCTCTGTAAT
CAAACAAGTAAGTGACCTGATCTCTCCAGTTTTGAGTCATATCATCAACC
ATTCGATTACCACTTCAAATTTTCCAAGTAAGTTAAAACTTTCAAAAGTA
ATTCCTCTTTTCAAAAACGGTGCTAAGAATGACATCAAAAACTACAGACC
AATATCCATATTGCCAATTTTTGACAAGATTTTCGAAAAGATTGTTCACA
AACGTTTAATGAAATTTTTCACTGATTTCGAAATATTAGCTCCAAACCAA
TATGGTTTTCAAAAATCTAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051592-exon-scaffold_202-1575043694:74683..77657 | TCONS_00051592-exon-scaffold_202-1575043694:74683..77657 | Clytia hemisphaerica | exon |
| TCONS_00051592-exon-scaffold_202-1510915933:74683..77657 | TCONS_00051592-exon-scaffold_202-1510915933:74683..77657 | Clytia hemisphaerica | exon |
| TCONS_00051592-exon-scaffold_202-1491911889:74683..77657 | TCONS_00051592-exon-scaffold_202-1491911889:74683..77657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:74683..77657 - |
Blast
The following BLAST results are available for this feature:
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