TCONS_00051613 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051613
Unique Name	TCONS_00051613
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	795

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_202:268356..270539-
coding sequence from alignment at scaffold_202:268356..270539-

transcript sequence

>TCONS_00051613 ID=TCONS_00051613|Name=TCONS_00051613|organism=Clytia hemisphaerica|type=transcript|length=795bp
GTAGAAGATTTGGACGAATACCAGAATCAATATAACACGGGTGCTCATCG
CGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACGCAAAC
CGAACTTTGATATATCGTTTCTCGAATCAGCCTACGAAGGACCTGATGGT
GTTGAAAACTGTAACTCTGATGAAGACTCAAACGATGCAGAAAATATTGA
CTCCAACCCAGAGGAAACTGCTTACCCAGAGGAAAACGTGTACCCAGAGG
AAAGAAATGGTTCTGAGGAGAATCGTGATTCAGAGTACATCAACCCTAGG
CCTGGTTCCGAAGGCAACTGTGACTCCAATACTGAACAGCATAATGTGTC
CCAACAAACGGGAAATGTAAATGTTAGAGAtcaacaacaaaacaacaatA
CAAACCGTAAAAAAGGTACGCAATTGGCATCGAATCAAAGTAAATCTACA
AATTTTACTGTTCATAGCACCAGCACTCCAGGCTCTAAGTATCACTTACG
ATCATCCAGAAAGACGAAGAAATTTTCTGACTCTTGGTTTACTGAATCGA
TTTTAGACGATAGCGATGATTTCAATGCACAAGAATACGACAAACATTTT
GCCAAAGTGGAGGAAATGCGTCAGTCAAGTATAAATCATCAAACAAACTA
CAATCGCAAAATGGTCGAGCGTCATGCGGCTAAACATAGTTCAAAAGTTT
ATTCGGTTGGCGATGAGGTCCTTgttaaaaacccaaaaataaaatcacGC
CATGGAAAACTTCCTTTAAACGAACCTAGGGCATTCAAAGGGAGG

Run BLAST on NCBI

protein sequence of TCONS_00051613-protein

>TCONS_00051613-protein ID=TCONS_00051613-protein|Name=TCONS_00051613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
VEDLDEYQNQYNTGAHRGIGENRSPFELFFGRKPNFDISFLESAYEGPDG
VENCNSDEDSNDAENIDSNPEETAYPEENVYPEERNGSEENRDSEYINPR
PGSEGNCDSNTEQHNVSQQTGNVNVRDQQQNNNTNRKKGTQLASNQSKST
NFTVHSTSTPGSKYHLRSSRKTKKFSDSWFTESILDDSDDFNAQEYDKHF
AKVEEMRQSSINHQTNYNRKMVERHAAKHSSKVYSVGDEVLVKNPKIKSR
HGKLPLNEPRAFKGR

Run BLAST on NCBI

transcript from alignment at scaffold_202:268356..270539-

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051613 ID=TCONS_00051613|Name=TCONS_00051613|organism=Clytia hemisphaerica|type=transcript|length=2184bp|location=Sequence derived from alignment at scaffold_202:268356..270539- (Clytia hemisphaerica)
GTAGAAGATTTGGACGAATACCAGAATCAATATAACACGGGTGCTCATCG
CGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACGCAAAC
CGAACTTTGATATATCGTTTCTCGAATCAGGTATCATGAACTATTCATAA
TTTAAGGTACAAATTAAAACATACAAGCGTGTTGGTAATTAATCTGAAAA
ATTGAACCGCAGTGCGGATTTGGTGCAGGCCACTTCATTGGTTTCATATA
ATTTGTTTTCCAGCCTACGAAGGACCTGATGGTGTTGAAAACTGTAACTC
TGATGAAGACTCAAACGATGCAGAAAATATTGACTCCAACCCAGAGGAAA
CTGCTTACCCAGAGGAAAACGTGTACCCAGAGGAAAGAAATGGTTCTGAG
GAGAATCGTGATTCAGAGTACATCAACCCTAGGCCTGGTTCCGAAGGCAA
CTGTGACTCCAATACTGAACGTAAGTAAGCTATTAAAAGAGACTGCGTAA
TAAATAGTTGATCTGTTCTATCATTAGATAAAGAAGTATTACTGGATCTC
TTTCGATGTTTAGTTTCTTCAGTTATAAGTTATAAGTGGAAATTTTAGAA
TAACTTTTTACCCCCTTGGAAAATGAGTCTTTTTACACTGAAAAGAAAGT
TTCCATAGATTGATGGAAAGATCCAGTACGGGACTTTCCTAGGCGTATGT
GTCAAAAATTGTAGCTCTGTAGTTCCAGACTACCAGAGCCACGGTGCCTA
TCTTGACATTCGTATGACACTGGGAGAGCATTACTAACACAAGGCTGAAT
TTGTGACAGTTCCAGGGAAATCATACAATAAAGATAAATCAGAAATGAAA
GAATTTTGTACTTATATTTTCTTCCTTAGAGCATAATGTGTCCCAACAAA
CGGGAAATGTAAATGTTAGAGATCAACAACAAAACAACAATACAAACCGT
AAAAAAGGTGGTTGTTTCAAACATTTCATTTTTAATTTCATTGAAATACT
AGTCATTTTTAATTTCATTGAAATACTAGTGATAACTTTTTACCACCGCA
GAGATCCTAAATGCTATTGGCATTCATTATTTCACATAAGAAAGTTAGCA
AATCATCTCATTTTAGCGTTTAAGCTCCGCTTAAATGGTATTCTGGTAGC
ATTCTTGTTTCAACGATTTCTCTATTGTTTTATAGGATGTTACAGAAAAA
TGTTCTTTATTAATAGGTACGCAATTGGCATCGAATCAAAGTAAATCTAC
AAATTTTACTGTTCATAGCACCAGCACTCCAGGCTCTAGTAAGTACAAAC
ATTACGCAATGACTCTTGCATTGAAATATTTTAAACTGGCGGATGATTGA
TATATCTTCATATATGATACATTAATTAATGATAACGTAATCGTTAATAA
TAATAGGTAGTTCATAGTCGTCTATCGATTCACGTCTTCACGCGCAACCT
TCTGAGGTGACACTGTAAATTCCCCACTCATACAGTTAACATAAAGCAGA
ACTTAGTTTTAATTTGTAAATCTGTATTTTAACTATTAAATTGTAGAGTA
TCACTTACGATCATCCAGAAAGACGAAGAAATTTTCTGACTCTTGGTTTA
CTGAATCGATTTTAGGTAAGATTTTACAAACAATGTTTTACAAACACCTC
TTTTTACAAACAGCTGTTTTTGAGTTTCCTCAGGGTTCTGCCGTGACATC
AGTCTTTATGTCTACACCTCTGTCTGTCCCAGTGACAACGATGATAATTT
GTTAGGGGATGAAAAGTTGTGATAGCCAATATTGAGGATAACCAAACTTT
GTTTGCTTTTTCCTGAGGGTTGCGAATTAAATTTAGCTTTCCAATGGACA
TGAAATTTTGTTTTATTCTATCACACTAATGATTTTTGGCTGATTTTTCA
TTGTATTATCGGGTCTGTTTAATGATCACTTTTCTTATTCTCCAGACGAT
AGCGATGATTTCAATGCACAAGAATACGACAAACATTTTGCCAAAGTGGA
GGAAATGCGTCAGTCAAGTATAAATCATCAAACAAACTACAATCGCAAAA
TGGTCGAGCGTCATGCGGCTAAACATAGTTCAAAAGTTTATTCGGTTGGC
GATGAGGTCCTTGTTAAAAACCCAAAAATAAAATCACGCCATGGAAAACT
TCCTTTAAACGAACCTAGGGCATTCAAAGGGAGG

Coding sequence (CDS) from alignment at scaffold_202:268356..270539-

>TCONS_00051613 ID=TCONS_00051613|Name=TCONS_00051613|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at scaffold_202:268356..270539- (Clytia hemisphaerica)
ACGATAGCGATGATTTCAATGCACAAGAATACGACAAACATTTTGCCAAA
GTGGAGGAAATGCGTCAGTCAAGTATAAATCATCAAACAAACTACAATCG
CAAAATGGTCGAGCGTCATGCGGCTAAACATAGTTCAAAAGTTTATTCGG
TTGGCGATGAGGTCCTTGTTAAAAACCCAAAAATAAAATCACGCCATGGA
AAACTTCCTTTAAACGAACCTAGGGCATTCAAAGGGAGGAGTATCACTTA
CGATCATCCAGAAAGACGAAGAAATTTTCTGACTCTTGGTTTACTGAATC
GATTTTAGGTACGCAATTGGCATCGAATCAAAGTAAATCTACAAATTTTA
CTGTTCATAGCACCAGCACTCCAGGCTCTAAGCATAATGTGTCCCAACAA
ACGGGAAATGTAAATGTTAGAGATCAACAACAAAACAACAATACAAACCG
TAAAAAAGCCTACGAAGGACCTGATGGTGTTGAAAACTGTAACTCTGATG
AAGACTCAAACGATGCAGAAAATATTGACTCCAACCCAGAGGAAACTGCT
TACCCAGAGGAAAACGTGTACCCAGAGGAAAGAAATGGTTCTGAGGAGAA
TCGTGATTCAGAGTACATCAACCCTAGGCCTGGTTCCGAAGGCAACTGTG
ACTCCAATACTGAACGTAGAAGATTTGGACGAATACCAGAATCAATATAA
CACGGGTGCTCATCGCGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGT
TCTTTGGACGCAAACCGAACTTTGATATATCGTTTCTCGAATCAGACGAT
AGCGATGATTTCAATGCACAAGAATACGACAAACATTTTGCCAAAGTGGA
GGAAATGCGTCAGTCAAGTATAAATCATCAAACAAACTACAATCGCAAAA
TGGTCGAGCGTCATGCGGCTAAACATAGTTCAAAAGTTTATTCGGTTGGC
GATGAGGTCCTTGTTAAAAACCCAAAAATAAAATCACGCCATGGAAAACT
TCCTTTAAACGAACCTAGGGCATTCAAAGGGAGGAGTATCACTTACGATC
ATCCAGAAAGACGAAGAAATTTTCTGACTCTTGGTTTACTGAATCGATTT
TAGGTACGCAATTGGCATCGAATCAAAGTAAATCTACAAATTTTACTGTT
CATAGCACCAGCACTCCAGGCTCTAAGCATAATGTGTCCCAACAAACGGG
AAATGTAAATGTTAGAGATCAACAACAAAACAACAATACAAACCGTAAAA
AAGCCTACGAAGGACCTGATGGTGTTGAAAACTGTAACTCTGATGAAGAC
TCAAACGATGCAGAAAATATTGACTCCAACCCAGAGGAAACTGCTTACCC
AGAGGAAAACGTGTACCCAGAGGAAAGAAATGGTTCTGAGGAGAATCGTG
ATTCAGAGTACATCAACCCTAGGCCTGGTTCCGAAGGCAACTGTGACTCC
AATACTGAACGTAGAAGATTTGGACGAATACCAGAATCAATATAACACGG
GTGCTCATCGCGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTT
GGACGCAAACCGAACTTTGATATATCGTTTCTCGAATCAGACGATAGCGA
TGATTTCAATGCACAAGAATACGACAAACATTTTGCCAAAGTGGAGGAAA
TGCGTCAGTCAAGTATAAATCATCAAACAAACTACAATCGCAAAATGGTC
GAGCGTCATGCGGCTAAACATAGTTCAAAAGTTTATTCGGTTGGCGATGA
GGTCCTTGTTAAAAACCCAAAAATAAAATCACGCCATGGAAAACTTCCTT
TAAACGAACCTAGGGCATTCAAAGGGAGGAGTATCACTTACGATCATCCA
GAAAGACGAAGAAATTTTCTGACTCTTGGTTTACTGAATCGATTTTAGGT
ACGCAATTGGCATCGAATCAAAGTAAATCTACAAATTTTACTGTTCATAG
CACCAGCACTCCAGGCTCTAAGCATAATGTGTCCCAACAAACGGGAAATG
TAAATGTTAGAGATCAACAACAAAACAACAATACAAACCGTAAAAAAGCC
TACGAAGGACCTGATGGTGTTGAAAACTGTAACTCTGATGAAGACTCAAA
CGATGCAGAAAATATTGACTCCAACCCAGAGGAAACTGCTTACCCAGAGG
AAAACGTGTACCCAGAGGAAAGAAATGGTTCTGAGGAGAATCGTGATTCA
GAGTACATCAACCCTAGGCCTGGTTCCGAAGGCAACTGTGACTCCAATAC
TGAACGTAGAAGATTTGGACGAATACCAGAATCAATATAACACGGGTGCT
CATCGCGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACG
CAAACCGAACTTTGATATATCGTTTCTCGAATCAGACGATAGCGATGATT
TCAATGCACAAGAATACGACAAACATTTTGCCAAAGTGGAGGAAATGCGT
CAGTCAAGTATAAATCATCAAACAAACTACAATCGCAAAATGGTCGAGCG
TCATGCGGCTAAACATAGTTCAAAAGTTTATTCGGTTGGCGATGAGGTCC
TTGTTAAAAACCCAAAAATAAAATCACGCCATGGAAAACTTCCTTTAAAC
GAACCTAGGGCATTCAAAGGGAGGAGTATCACTTACGATCATCCAGAAAG
ACGAAGAAATTTTCTGACTCTTGGTTTACTGAATCGATTTTAGGTACGCA
ATTGGCATCGAATCAAAGTAAATCTACAAATTTTACTGTTCATAGCACCA
GCACTCCAGGCTCTAAGCATAATGTGTCCCAACAAACGGGAAATGTAAAT
GTTAGAGATCAACAACAAAACAACAATACAAACCGTAAAAAAGCCTACGA
AGGACCTGATGGTGTTGAAAACTGTAACTCTGATGAAGACTCAAACGATG
CAGAAAATATTGACTCCAACCCAGAGGAAACTGCTTACCCAGAGGAAAAC
GTGTACCCAGAGGAAAGAAATGGTTCTGAGGAGAATCGTGATTCAGAGTA
CATCAACCCTAGGCCTGGTTCCGAAGGCAACTGTGACTCCAATACTGAAC
GTAGAAGATTTGGACGAATACCAGAATCAATATAACACGGGTGCTCATCG
CGGCATTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACGCAAAC
CGAACTTTGATATATCGTTTCTCGAATCAGACGATAGCGATGATTTCAAT
GCACAAGAATACGACAAACATTTTGCCAAAGTGGAGGAAATGCGTCAGTC
AAGTATAAATCATCAAACAAACTACAATCGCAAAATGGTCGAGCGTCATG
CGGCTAAACATAGTTCAAAAGTTTATTCGGTTGGCGATGAGGTCCTTGTT
AAAAACCCAAAAATAAAATCACGCCATGGAAAACTTCCTTTAAACGAACC
TAGGGCATTCAAAGGGAGGAGTATCACTTACGATCATCCAGAAAGACGAA
GAAATTTTCTGACTCTTGGTTTACTGAATCGATTTTAGGTACGCAATTGG
CATCGAATCAAAGTAAATCTACAAATTTTACTGTTCATAGCACCAGCACT
CCAGGCTCTAAGCATAATGTGTCCCAACAAACGGGAAATGTAAATGTTAG
AGATCAACAACAAAACAACAATACAAACCGTAAAAAAGCCTACGAAGGAC
CTGATGGTGTTGAAAACTGTAACTCTGATGAAGACTCAAACGATGCAGAA
AATATTGACTCCAACCCAGAGGAAACTGCTTACCCAGAGGAAAACGTGTA
CCCAGAGGAAAGAAATGGTTCTGAGGAGAATCGTGATTCAGAGTACATCA
ACCCTAGGCCTGGTTCCGAAGGCAACTGTGACTCCAATACTGAACGTAGA
AGATTTGGACGAATACCAGAATCAATATAACACGGGTGCTCATCGCGGCA
TTGGTGAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACGCAAACCGAAC
TTTGATATATCGTTTCTCGAATCAGACGATAGCGATGATTTCAATGCACA
AGAATACGACAAACATTTTGCCAAAGTGGAGGAAATGCGTCAGTCAAGTA
TAAATCATCAAACAAACTACAATCGCAAAATGGTCGAGCGTCATGCGGCT
AAACATAGTTCAAAAGTTTATTCGGTTGGCGATGAGGTCCTTGTTAAAAA
CCCAAAAATAAAATCACGCCATGGAAAACTTCCTTTAAACGAACCTAGGG
CATTCAAAGGGAGGAGTATCACTTACGATCATCCAGAAAGACGAAGAAAT
TTTCTGACTCTTGGTTTACTGAATCGATTTTAGGTACGCAATTGGCATCG
AATCAAAGTAAATCTACAAATTTTACTGTTCATAGCACCAGCACTCCAGG
CTCTAAGCATAATGTGTCCCAACAAACGGGAAATGTAAATGTTAGAGATC
AACAACAAAACAACAATACAAACCGTAAAAAAGCCTACGAAGGACCTGAT
GGTGTTGAAAACTGTAACTCTGATGAAGACTCAAACGATGCAGAAAATAT
TGACTCCAACCCAGAGGAAACTGCTTACCCAGAGGAAAACGTGTACCCAG
AGGAAAGAAATGGTTCTGAGGAGAATCGTGATTCAGAGTACATCAACCCT
AGGCCTGGTTCCGAAGGCAACTGTGACTCCAATACTGAACGTAGAAGATT
TGGACGAATACCAGAATCAATATAACACGGGTGCTCATCGCGGCATTGGT
GAAAATCGCTCTCCGTTTGAGTTGTTCTTTGGACGCAAACCGAACTTTGA
TATATCGTTTCTCGAATCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032679	XLOC_032679	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00051613-protein	TCONS_00051613-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_202	supercontig	scaffold_202:268356..270539 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0816446	0.129033	0.23351	0.437218	0.153053	0.126387	0.122675	0.120962	0.161059	0	0	0	0	0	0	0	0	0	0	0	1.62504	0.406086	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00051613 vs. Swiss-Prot (Human)

BLAST of TCONS_00051613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00051613 (transcript) - C. hemisphaerica