Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051616 ID=TCONS_00051616|Name=TCONS_00051616|organism=Clytia hemisphaerica|type=transcript|length=2900bpRun BLAST on NCBI transcript from alignment at scaffold_202:276373..295520- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051616 ID=TCONS_00051616|Name=TCONS_00051616|organism=Clytia hemisphaerica|type=transcript|length=19148bp|location=Sequence derived from alignment at scaffold_202:276373..295520- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00051616 vs. Swiss-Prot (Human)
Match: DCR1C (Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 3.670e-30 Identity = 69/216 (31.94%), Postives = 117/216 (54.17%), Query Frame = 1 Query: 34 SGDFRLGEKEISKIPTSFC-----NVKSVYVDTTFCCPLVPDFPTRVDTTEAIISIIKSWIEKGPNYMIHLKCKGRYGYEYIMKEVAKKFKTKLHVNEWRLKFSSKLPYMLEHFTTTSHYTQIHCCYYGRLSTS-SAKALPCGMHFIDGRPCNVLTIVPSSLIFIQNGEIPKEGKIWNAKQHIWRVFHSMHASYNEMRILLRYLKPQNIYPFVPPA 663 +GDFRL + E +++ +++SVY+DTTFC P P+R + ++ +++SWI + P +++ L CK YGYEY+ ++++ ++HVN +L +P +L H TT + TQIH C + + LPCG+ + P ++++I PS++ F + K I + +R S H+SY+E++ L YL P N YP V P Sbjct: 134 TGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVN--KLDMFRNMPEILHHLTTDRN-TQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSR--KTNVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNVIPV 344 The following BLAST results are available for this feature:
BLAST of TCONS_00051616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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