|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051619 ID=TCONS_00051619|Name=TCONS_00051619|organism=Clytia hemisphaerica|type=transcript|length=556bp
CGTGTGCGGAATAATCAGGATCTGCTAAGATATTAGTCACTCGATCGCGC
GCGGCAAAAGCGCGTTCAAAACGCGGGAAAGTCAAAACTGAAATCGAAAG
TTACGCCATTTGAGCGGGAAAAGCATTGAAGAAAGATGGCGGATGAagat
tgttgaaaattttataatttttttgaatcagaaaccaacaaaaaactTCA
TTGAAACTAATATGCTCATCGAAGATATTTGGAAGTAACATCATTCAATT
ATAGCTGAATAATGTCAACATTCAATGGAAAACTTCTTGAATATCCATTC
GCCTCCATTGACAGATTTGATGGTGAAAATTTGgcatcaacaatattttt
cttgtCACATTGTCACAAagATCACATTGAGGGACTTCTTGcaattgatt
ttattgaagTATTGCGGACAAGAAGAACAGTGAAGCTCTACACTTCAGAg
acaacaaaaaatttaatgagcTGTGATGATGAAATGGTTCATTTGCTTGA
ATTCACGATTGGTTTGCCCATTCACCAGCAACAAGTACTCACTATAAAAG
ATAATC Run BLAST on NCBI transcript from alignment at scaffold_202:296832..305164- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051619 ID=TCONS_00051619|Name=TCONS_00051619|organism=Clytia hemisphaerica|type=transcript|length=8333bp|location=Sequence derived from alignment at scaffold_202:296832..305164- (Clytia hemisphaerica)
CGTGTGCGGAATAATCAGGATCTGCTAAGATATTAGTCACTCGATCGCGC
GCGGCAAAAGCGCGTTCAAAACGCGGGAAAGTCAAAACTGAAATCGAAAG
TTACGCCATTTGAGCGGGAAAAGCATTGAAGAAAGATGGCGGATGAAGAT
TGTTGAAAATTTTATAATTTTTTTGAATCAGAAACCAACAAAAAACTTCA
TTGAAACTAATATGCTCATCGAAGATATTTGGAAGTAACATCATTCAATT
ATAGCTGAATAATGTCAACATTCAATGGAAAACTTCTTGAATATCCATTC
GCCTCCATTGACAGATTTGATGGTGAAAATTTGGCATCAACAATATTTTT
CTTGTCACATTGTCACAAAGGTATGAATTTTTTTTTTTGTTTATCTCAAC
AGGAGATATTATTATTATTAGTCAGGCTTATTTTTACTATACGGAAGAGA
TAAGGGTAACTTTCATTGCCACTAAAATAAAAAGCAGAAGATACTCATGA
ATAGACCTTTTTTCAAAGAGGCCNCGTCGCTACGCTCCTGCGGGGGCAAT
AACGGCATTCGACGAATGTGATGACGGTTATGATCTGGGTTCTAACAATG
TTTATATCCCAGAAATAGTTTAAAAACATTAAAGAGGAAAATTTGAGTAG
TTACAGTAGAGTCTCTTGGATTCTCATTGAGAATCTTTGAATATCCCATT
GCCTTAGAGTGAATACGTGCCGTGTGCGGAATAATCAGGATCTGCTAAGA
TATTAGTCACTCGATCGCGCGCGGCAAAAGCGCGTTCANTTATTACAATA
TGCATGATACAGTAATTATGCATGGCTCTATCATTGTTTTTATGGCTGGA
CTACATAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTATATTATGC
TAAAAGGGCCATTCCAGAAAAAAAAAATTACCCCCCAATGGACGACATGG
AATTTCCGTAGCAAATTGCTCTCAAGAAAGTCCGGAATTTCCGTAACAAA
TTTACAAAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACTTTCTCTTTAAAGTTTGCCTGGAATTCCGTGCCAAAATTT
ATTTCAAAAATTGATGTCATCCATTAGGGGGTAATTTTTTTTTTCTGGAA
TGGCCCTAAATAGAACGGTTCATACCGTCAACTTAACAGACAACGGCTCT
AACTTGGAACGAGTGGTCGAAACATGGAATTGGGGATTTCTGGACGGTCT
TTTCACTTACTGTTGAATCTCTTTGACAACAAGTTTGTTTTGATACCTCA
ACCAGGTTTATGAATTAAACTTTAGTTTAGTCACCATGCCACAATCACAA
CAACCAAATCCATTCAAAAGCATTTTTTTTTTATAAGTACATAATTTAAT
CCAGACCCGATCAATCGAACTTGTGGAACCAATCGAACAATCGAACTAAC
CGAACTCCATCAAACGATTAAAGTTCGATTAAAAAATTTAATCGAACTCT
AAGATTTTTTAAAAGATTGTGAGTGTTCCATTAAGTTCGATCAATGGGTT
TCGGTTCGATCTGTTCGATAAACCAATTTTGTTCGACAAGTTTGTGCCGC
CACCGTATATAAGTTTCTTTTCAAAGCCAAATTCGGAATGTAAATCGGGA
AATTACCGTAAGTTGGTCTAATCTCGACATCCGTCTTTTAATTTCGACAC
CCTTCTTTAGAGATAGGAATAATATGAAAGTTGGAATCGGTGAATTTTTC
CTCTCTTAGCACTAAGCAAAGAAAAATAATTTCAACCTTTCTATTATTTT
CAGCTCTAGAAAAGGGTGTCGAATTTAGATGAGGGATGTCAACATTAGAC
CAAGTTACGGTACTTCCGATAACGGATTACAAACTTTTCCTGTATCCTTT
TAGCGCCAGAGGCGGTTTGTTGGGGTGTAGTAATCCACCACCCAGCCGCG
CGCAAAATTGCAACAGAGGGGCTATGGACTTCCGTATTCCGGATAGAGAA
ATATCCAGGTACAATAAACGTTAAGCTGTTAAGTCCGGGAACTGTCGAAA
TGGCAATCGCGTGGCAGGATCCCGGGGCAGGATAAAGTTTTTGCAAGCGA
GGGAAGATATGAGGATTTAGTATCATCTAACTAATCGAAGTTTTTACTTA
CCGAACGAATCGAACTGCCATTGCTTAAAAAATTGTGAGTGTTCGATTAA
TTTTTTCAATCGAACTTTAATCGTTCTATGGAGTTCAATTACTCCGATTG
TTCGATTGGTTCGACAAGTTCGATTGATTGGGTCTGGTTTAATGAAGTAA
TTAGAAATCTAATGCCTTACACGCGTTGCTCCTCTTGCGCCATCTTTTTG
TGTGCCTCTCTCTTGAGACTTTCTTCCAAAGTGCGTGATTGAAGTTACTG
TACTGTTTTCGATAAAGATCTCACGATTTTCTGCGGCAGAACAGAGTTTT
TAAAAATCTGTTTTGGGGTGCACGCGCAAACGTGTGCAATCACTTTTTAC
ACGTTTCTGGTCACAAAGATCTGTTCCTTTTGGGGAGTGAAAACCTACCT
GGTGAGAGTAGCGTACACGTTTTTTTTATAAGGAACANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAGTTTTTCTATTTTAATTTGTCATAATTGTCTTAT
AAGTGCATGTTTTGAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCA
AAATTCCCCCCCCCCCTCGGGCCAAACCATGGTTGGCCCTCGCGGTGTCA
CTAAACTTCAGCCCCCTTAATATGAAAATGCTTCCTACAGCACTGATCTG
TAAAAATTCTTTAATCCTGTTGCATTTACTTAGATAAAAAATCTGTGTGG
CTAGGGATCTTCACCCTGACTTACAAAACCTTGATAATCTAACATGAAAC
TTCAGTAGTTAGCTTATCTCTTATTTCTTAGGGCATTTATTCTATTTAGC
CTAATAATATATGCTACTAATATAGTCTAAACTAGAGCTAACTGTTGTAT
TGTTTGATTGTTTGAAAAGGATTGTCGAAAAAATTTGCCATGTCCTTGGC
TTAGGGGTCACCTAAAATATTTGGCAACCAGGGGTTACCTAAATCTTAGG
GTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCATGTTT
TTAAAAATCTGTTTTGGGGTGCACGCGCAAACGTGTGCAATCACTTTTTA
CACGTGATTTTTCTGTTCTTTTTGGGGAGTGAAAACCTACCTGGTGAGAG
TAGCGCACACGTTTTTTTTATAAGGAACACGTTTATAAGGAACTTGAGGC
TCAAAATGGTCCGAAAAACTAGCAATTGTTAAGGAACTACTCAGGCTGAG
AATAACAAAACAAGTCAAGTCACAGAGAGTTAAGCTTGAATTTGCACACA
TTTACAAAGGCTGAACACAAAGATAACAAAATGTTGACGAAACAACGTTC
AATAAACCTCTCTTTTTGCATTTTAGTCCATTGTTATACTTATACATATG
TCACATACTTAGCAAATCTAATCTTAGCAGCTTAGTGAATAAGGAAAATG
GATAAGGAACTTTGAGGCTGAAATTCTCTTGAAAAATAAGGCACTCCAGG
CTCGGAACCAAGTTAAGGTTCCTTATAAAAAAAATGTGTATATATTCACA
TTCTTTGATATGATTTGCGGTTATGTTAATCAAATGTGAAATGACTTTGG
AGGCTCAGTGAAATGGAGGCCAAATTGCTGTCCCATGTTCTGTTAGATAG
TCCCANGATTTGCGGTTATGTTAATCAAATGTGAAATGACTTTGGAGGCT
CAGTGAAATGGAGGCCAAATTGCTGTCCCATGTTTTGTTAGATAGTCCCA
CAATGGCTCTTGTCGGTAACAATCCTTGATATTCAAAAAACTTAACATCC
TTACAAAAGTTGTCTTTTTTATTTCTCAAACATTCGTCGGGATCATCATA
TAAACGCGTGTTTTTTTTTCAAACAACTAAACAGTCTGGGGGTAAGTCTC
GAAGTACCACAGAATATTCTTCAAATAAAGAAGTATCTTTTGGCATTGAC
AATCAAATATAACACATACATTTATTTGCTTAATTAAAAAATACAAAAAA
TCAATTTTGCATTCGTGAAAAATAAAGATAAAGAAATGATGATTATTATT
ACATATACTAAAACGCCCCCGTCTTTTAGTCTTGTCTAATTTCCAATCTC
GGAACTTGCAAAACGCTCGTCCGTCTGATATCTACAATTTTCTGGTCTGT
AATTTGTATGACCTGTGACCTGTGACCTATAATCTGTAACCTGTGATCTG
TAACCTGTAGCCTCCGGTTTACACTAACCGCAATCAAACCATTGAAACCA
AATTAAACACAATCGACTGATTGAAATTCAATTGTCAAACAGGGTTGGAT
CTCAATAGTATATTACTGCAATTTTCAGATTCTATTGAGATTCAATTATA
TAGGTTCGTTTGGGGAGAACGCAACAATCTTTTGAATAACTAATTACTCT
CCAACAGAAAATTTTTAAATGAAATATCATATAATTGATTTATCTTTTAC
AACAAAGCTGCTATCTGGGTAAAAGATAATTTATCCCATTTGTACCTGGC
TGGAGTAATTTTTTATTCAACAGGCGGTTGCAATCTCCCAAAGGACTATT
CGTAATTCAATAAACCTTTGCTAGTCTGGTTAGGATGCCATGTTGAATTT
CAACAACTCCAGCATTAAAACAATGTTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAATATTTG
GGGGGACCTAGATTGTTGGGGGGAGCCTAGATGATCTGACTGAGACTCTG
GGGGCTGTTCAGCTAAATTCAAAAGATCTATTATCTTACTATTAAATCAA
AATATAAAAAGCAAAAGATTTGTAAACATAAATATTAAAACTAGTAAAAT
TTAGTTTTCATTTATCAGTACTGTACTCGCGTATATTTTTTATTGACTTC
TCTCTACGGGGACGGGAGAACAATGTTTTTGTTTATCTTGGGACCTGAAG
TGCTAGGGGACCTAGCACAAGACAATTTTTTGGGGGAGCTAAATTGTTGG
GGGAACCTTACTTTGTTGGGGGGGGGGAGCTAGAAACCTGGCTGAAGCTA
TGGCCATGAGTTAATCACAATGTCATGTTGAATTAATTAAAAAACTACAA
AAACTGGATGAAAATGCAAAAAGGTCTACTATTAGACATGACATAGTTAT
GTACAAGTGAACAAGTCATGTTGCAACTTTCTGACTTTTATAAAAATTGA
GAACTAGAAATGTTTGGAGGCTATGAAAGTCACCCCACTCTTACAACAGT
TAATAATAGGACTGATTGATCTTTTGAGTAATATTTTTTTAAATAATTAC
TTTATAAAACAAAAGAAAACAGACAAAGATCAAAGAATTTTACTGCAATT
TGTGATTGACAACAAATTTTTGCAATTTTAAAATTTGCACATACCTTATT
GGAACTAATTTTTGTGGGAATTAATTTTAGCGNAAATTTTTGCAATTTTA
AAATTTGTACATACCTTATTGGAACTAATTTTAGCATTTTTCGCGTTTTT
TGCGGTTTTTGGCAAAACTGCAAAAATTTGATCCCTCGAAATACAATTTT
TTTCAACAATTTTATCAAAAAATTTGAAAAATCCCTAGGAAAATGAAAGA
AATTTGTCCAAAAAGGGCAAAACTGCAAAAATTAAAACCCACGAAATGTA
ATTTTTTCTATTTTTTTTTTCGAACGCAAATATTAGTTCTCGCAAAAATT
AGTTCCAATAAGGCATGCATGCAGTCACATTATCAATTTATCAATGTTTC
CATTCCATGTCCAAACCTGATGGGAGGTGGGCTTCATAGATTGACTCTAA
GAAAACCTGATGATATACAATTTCAACCTGTCTGTCTCGATACTGGTAAG
CAGTTGAATAAAATACAATGTGGAGATGCAGCAAAGGCATATTTAGCTGA
AGTCTTCAAAGGACCTTTCAACTTTGTCTTTTGGAAAAATTGCAATTGAC
CTTTTGCTTATCATAATGTCATATTGAATTAATATTCTTCCGGCATCAAA
ATAACGAGAGCAGATTTTACATGCTTTTAGTAATTAGTCTCTATATAGAA
AATTATTTAAAAATCGAACTTGATAAAGACAACCGTCGAAACGTTGCATA
CGCAACTGTGTTTTTAATGTTCACATTTTATTGCCGACCCAAAAAAATAT
CAGCATTTTGATTGGTCGAGAGCATCGAGATATTTGCGATATTTCATATT
TCTTTAGTCTGGAAATATGACCGCGTTGACTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAAAACAAAACAG
CCGAAAAGAACTGACTTTCGGAGAAACTGACTTGGGAATCAAACATCAAA
GGGGGAAACGCAACAAAAATATGTTCAGATTAACTTTAGAGTTCTTCCAT
AAAAGACACTAAAATCAAATCTGATGAACTAAGAATTTATTATAAAACTA
CTTGACACCACCCAAATATTTTCAACTTGTGGCAAATTTGTTCGTGTGAT
AACCAAACAGTTTTTTATCAATGCATACAAAAAACTTGAGATAATAAATT
GATAATAAATTCTTAGTTCATCAGATTTGATTTTAGTGTCTTTTATGGAA
GAACTCCAAAGTAAAAGTTAATCTGAAAAAGTCAATGTATATTTGCACTT
CTCGTGCAATACTCGATATTTTACTCGTTCCGAAGATTTTACCGATATTT
TTCCCCGCCTAAAGGCTCGGAAAAATATTACGGAAAAATCTCAGTACTCG
TAAAATATTTCTCGTATTGCACTCGAAGTCATGCGATAACTAGTACTAAT
TTTTGACACAAATATACATTGACTTTTACGTTCACTAGAAAATTAATTAG
TTACTTTAGTTGCAGTTGAAATAATTTCTGTCTTTCATTTTCATGTCGTT
TTATTTTTCTTTTGCTTAGATCACATTGAGGGACTTCTTGCAATTGATTT
TATTGAAGTATTGCGGACAAGGTAAATTGCAACATTTCCTTTTTTTTTGC
TGAATATTCATATTAGATGATTCCAGACACTTAGTCCACACAATATATCA
ATACCACACAAAAATGTGACCTTTTGAAACCCAAAAATTTCCAAATATTT
ATAGTTTTCGACAAAATCGATTAAGAATTAGTTTGCTGTATATTTACATA
GAATAAACCTTTCATTTTGCTTATTGTAGAAGAACAGTGAAGCTCTACAC
TTCAGAGACAACAAAAAATTTAATGAGCTGTGATGATGAAATGGTTCATT
TGCTTGAATTCACGGTAAGATTTGCATTATTAATATTTGCTATAAAAAAA
TCTTTCGTTTTAACTGCATTTTAAAGTCTGGAAAGCTATTCAAAGCTTTT
ACATTTTACTTTTTTATTCACTTTTTTTGTATAATTTTCTTTACATTTTC
TTTTATTCAGTCTTTTTACTTGTACCATTTTTAGATTGGTTTGCCCATTC
ACCAGCAACAAGTACTCACTATAAAAGATAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051619-exon-scaffold_202-1575043694:304795..305164 | TCONS_00051619-exon-scaffold_202-1575043694:304795..305164 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1575043694:297344..297395 | TCONS_00051619-exon-scaffold_202-1575043694:297344..297395 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1575043694:297051..297135 | TCONS_00051619-exon-scaffold_202-1575043694:297051..297135 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1575043694:296832..296880 | TCONS_00051619-exon-scaffold_202-1575043694:296832..296880 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1510915933:304795..305164 | TCONS_00051619-exon-scaffold_202-1510915933:304795..305164 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1510915933:297344..297395 | TCONS_00051619-exon-scaffold_202-1510915933:297344..297395 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1510915933:297051..297135 | TCONS_00051619-exon-scaffold_202-1510915933:297051..297135 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1510915933:296832..296880 | TCONS_00051619-exon-scaffold_202-1510915933:296832..296880 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1491911889:304795..305164 | TCONS_00051619-exon-scaffold_202-1491911889:304795..305164 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1491911889:297344..297395 | TCONS_00051619-exon-scaffold_202-1491911889:297344..297395 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1491911889:297051..297135 | TCONS_00051619-exon-scaffold_202-1491911889:297051..297135 | Clytia hemisphaerica | exon |
| TCONS_00051619-exon-scaffold_202-1491911889:296832..296880 | TCONS_00051619-exon-scaffold_202-1491911889:296832..296880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:296832..305164 - |
Blast
The following BLAST results are available for this feature:
|
