TCONS_00051621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051621
Unique NameTCONS_00051621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051621 ID=TCONS_00051621|Name=TCONS_00051621|organism=Clytia hemisphaerica|type=transcript|length=4074bp
CAAAGTCAACAAAGAGTAGATATTTCCCGCGATAACAAAAAGAGAGCTAG
AGGGAAATTAATAAATTAAATTCTTGAGCTAAGAAttcagatcaaaataa
aaaaaagtttcagagAGTCAGACGAGCAGTCAGTGATtcgtctttaaaaa
aaaatagcaaTCGCAGTTACataaaaaagattataaaaatttgGATTTGT
TTTACAGAACCGTTATACACACATCAAACCAgagaaagtttgtttttaat
ttggaGAAACCTTAACGATATAACATTGTACTAGATATTCTTCATGAATT
TCATGAACTTATTTAAAGTGAGCTGTAGTGAGGTGAAAGTacattttgat
atgtttttaaCTCACCACGTACAATTTCATCGAAGATTGTCCGACCACga
tcaaaagaaaacttcatcacAACAACTTTACAATAATCATCAAGATCAAC
AACAACAATCCAATGTAACCATGGATGACcataatcaaaatcaaaatcaa
catcAATTAGATGTTCATCAAAACGCTCAACAAGCAGACATCGCCGTTCA
TAATAATGCAGCTCAAGATATTGATTACGAAGCAATTGATCAAGTCGCCG
AGCAAATGAAAACATTCGCTGATCAATTTTATCGAGAACACACAACGAAC
AGATTCCTACAAAAGGTGAACGACAACGCATCCACAATACTGATTTGCAG
TATGGCAGCATTGGTTGTATATCAATGTGCAAGGAAATGATGGTGTTGGG
ATGGCATTGGATGGCTGTTGGTTATGGTTGTCTTTGTCCTTGGCTTGAAT
GATTTTGCTGGATGTAGGACCCTATTATTAGTAGGTCTCCAAAATTATGC
AATGCGTGGGAAAAAAGGATTTTGTGGAGTAAGTCCGATTCACTTTTTCG
ATCTGATATTTTGTATGGGTTTGAAAAGATCAAATAAAAGAGTCtaaaag
aaaattgagaaaaaacgGAATTACTCTAATCTTACTTTTTTCACATATGC
AAAAAGGTATTGATATTTATCATTGTGGATAATTATCATTGTTGGAGTTC
TCCAATACGGCATCTTAAGAGATTTTAGTCCGATTCAAACGTTACATTTA
TTGGTACTCAATTATCTTAAGTGCCGAAACTAACTCCAAAGTGTATAAag
tgtttatattttttttgaattgttattttaaaAGTAATCTGATACAGGTT
ACAACagttttaatattttgttgcgtttttttattttctttaactcgTTT
TAAGGGTTATCATGGCGGATTCTTATGATTTCTAAAgtaaaaaagtattt
tgattttttaaaaatatgtacattATCATCATTtgtcttttaaaagattt
taaatgcagtttttattattattacaaaTAGCTATACATAAGCatcattt
ctttttgatttaattttattttaaatccattttttttcgtttatttttaa
gaaattttagatttatagaAAAAGATATAGTTAGATTTATCATTGATGTT
TAAGATGGTTCATTTATGATCCATCATACGAAAAACCCATGTTTTGAGCT
TTTGTTCACTTGTCGTTTTAGACCAGATTGTACAAAGCTTTTTGTGTATA
AAATGTACAGAGAGTtccatttttattgtttttatgtaCTGTCACTggtt
ttatttataaatttacatttttcttgtgttttttaaagaaaaacaattta
aaaaagtcTTTTGTGCGATCTACCCATTGTCGATTTTTTGAGCTGCGGTT
AAGTTAATCTCAGTAATCTTGATTTGTTTTTGCTtgagttgattttttta
ttaattgtcCGATTCAGATATATCAAGGACAATGCAAGAAAGATAATCTT
TTTAATAAATCCGATGAGCCAAAAATCTGGATTGATATAGCGCTTAAAAG
ATACTGTCTTCATTATTTCCTCGCGTGGGGTTTTTCGGATTACATAGTTT
TTATTAGATATTTTCATGTTTATATATTATTGTTTATATCCTTTCTTgtt
gtttatatttttgtatataGGTCgttcaaaaagataaaaaattgtttatt
aTTGTTAGTAAAAAGATACCTAAAAAGTTGTCAGACAAATTCTTatgatg
ttattttttattttgaatttttttttcattgtttttattttattttcatg
tcAAATTGGTTTTAAACCATGATCAGTTGATTGATACTAAATTTCTTGAT
TGGCAATTCtatattcaaaataattttgcaaAGTGACCTTGTGAGAGCTC
TGGAGACTTTTTCCCCATTGTTTATAGGACCAGATTAAGATTTCAACAAA
GAAGATTTTCGGAGAGTCTCTTTAAATTTTTGATCATATTTCAATAGCCA
AAAACCTCCctaaaatttttcatcttttgtcAATTGGTCAATAGAGATAA
TGAATATATTTGGAAGACGTTTATTATTAgcaaaagtgataaaaaaaaaa
tgaaggagaaaaagttttattatttattctaaattttttaagtttatatt
atttttttatttctttatttataaaaatcatacATTTATTATAGATTTTT
ATTATCTTCTTTTTCATACTTTATTATCTTTTCCTTCTTTAAGTCGTTTT
TCAGGGGAGACAAATAATCTtctaaattataaaaaaatagtcCGTTATAG
TTTTTGTTTAATAGTCTGCTTAGCTCAGGGCCTGAATGTTTAtaaatttt
ctcaaagaaaCAATAAAAAACGGACTAATAAAAAAGTATACTTCTTAACT
TGCATAATTCATAAGTTCTTGGTTAGGAAACAAAAGAATTCTTCATATTT
GTAACTCTATCGTTCAATTCATTTGCTAAGTGTTTCTTTAATGCTTcctt
cttcgtttttcttttAGTCCCAAGGGAATccaataaaaagaaatataata
ataaaagtatTTGAAATTGTTTCAAAAGGTTTTCCCAACAACCTCAACAT
TCTCTTTAGGTCTTTGAAATAGTAATTTCTATTcctagattttttattta
ttttccacGAATTTATGTTAGGCTACGTTAGATTCCAATAAGATCATCTA
AAACTAAAATCAAGAAGTTTTAAGCAACTCCTTGTTCCTAAGGgagattt
cctgaaaaaaatactttttcattcatttaatTGGAAAGATGATTTCTTCT
GATGCttcgttttttgaaaaagtgcatcATCatcaataattttatttttc
agttgaTAAAGAAATCACATGATTTTTTGATGACAATAGAGCGAGAGAAA
CAATGAAATCATTGCTAATTAgtcaatttaaaaaacaattaaaaaactaG
GTCGTTAGCTCTTGTCAATCAAATAATACATGGATTTGATGCCGAAATAA
TTTGTCTTTTTCATTTATGTTTCCAACCtttgttaattttgtattttatt
tttatttattttatttttaattttgttatttattttttgtttttttttcc
tccttttcgtgcctcattttttttcttcatccttttgtttatttttttct
tatttacgAAAATACACGTTGCAACGTCACTTAAGCAAGACACTAGTCAT
TACCATGTTGACGTTTGCTATTCTTTTGATAAACTTTCGtcggttttttt
tttgtctccTAAAGTTCACAACAAAATTAGACTTTGTTGTATTTTGTCAt
aaataaaacgaaaaaatatgACTCGCCTTTCTTAACGTCTTTTtccaatc
tttttcaaaaaatatttttgaattttcttcgtacataatttttttccata
GGTGTAAAATGCAATAATACATatatctgatttttttttaaagattgagt
TTTATCAAAAATGTTTAGTGTATTTTTCACGTTCTAATAAATGTTATTAC
AAAGTGTACATAGTTTTGAATCTATAGTTCGAAAATCGAAGTCAATTTTT
ATCGATTGTCGAAAACTATTAATTTGAAATtcgaaattataattttttaa
ttttttcttgtgTGTTTAGTTTACTGTAAATAATTACCTTTGTAAAtatt
aaatttaaaagaaacattAATTTTTAGACACTTTTTTGTGTCATTgtaga
taaatatttttgtacatATTATCG
Run BLAST on NCBI

protein sequence of TCONS_00051621-protein

>TCONS_00051621-protein ID=TCONS_00051621-protein|Name=TCONS_00051621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MNFMNLFKVSCSEVKVHFDMFLTHHVQFHRRLSDHDQKKTSSQQLYNNHQ
DQQQQSNVTMDDHNQNQNQHQLDVHQNAQQADIAVHNNAAQDIDYEAIDQ
VAEQMKTFADQFYREHTTNRFLQKVNDNASTILICSMAALVVYQCARK
Run BLAST on NCBI

transcript from alignment at scaffold_202:338958..343031-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051621 ID=TCONS_00051621|Name=TCONS_00051621|organism=Clytia hemisphaerica|type=transcript|length=4074bp|location=Sequence derived from alignment at scaffold_202:338958..343031- (Clytia hemisphaerica)
CAAAGTCAACAAAGAGTAGATATTTCCCGCGATAACAAAAAGAGAGCTAG
AGGGAAATTAATAAATTAAATTCTTGAGCTAAGAATTCAGATCAAAATAA
AAAAAAGTTTCAGAGAGTCAGACGAGCAGTCAGTGATTCGTCTTTAAAAA
AAAATAGCAATCGCAGTTACATAAAAAAGATTATAAAAATTTGGATTTGT
TTTACAGAACCGTTATACACACATCAAACCAGAGAAAGTTTGTTTTTAAT
TTGGAGAAACCTTAACGATATAACATTGTACTAGATATTCTTCATGAATT
TCATGAACTTATTTAAAGTGAGCTGTAGTGAGGTGAAAGTACATTTTGAT
ATGTTTTTAACTCACCACGTACAATTTCATCGAAGATTGTCCGACCACGA
TCAAAAGAAAACTTCATCACAACAACTTTACAATAATCATCAAGATCAAC
AACAACAATCCAATGTAACCATGGATGACCATAATCAAAATCAAAATCAA
CATCAATTAGATGTTCATCAAAACGCTCAACAAGCAGACATCGCCGTTCA
TAATAATGCAGCTCAAGATATTGATTACGAAGCAATTGATCAAGTCGCCG
AGCAAATGAAAACATTCGCTGATCAATTTTATCGAGAACACACAACGAAC
AGATTCCTACAAAAGGTGAACGACAACGCATCCACAATACTGATTTGCAG
TATGGCAGCATTGGTTGTATATCAATGTGCAAGGAAATGATGGTGTTGGG
ATGGCATTGGATGGCTGTTGGTTATGGTTGTCTTTGTCCTTGGCTTGAAT
GATTTTGCTGGATGTAGGACCCTATTATTAGTAGGTCTCCAAAATTATGC
AATGCGTGGGAAAAAAGGATTTTGTGGAGTAAGTCCGATTCACTTTTTCG
ATCTGATATTTTGTATGGGTTTGAAAAGATCAAATAAAAGAGTCTAAAAG
AAAATTGAGAAAAAACGGAATTACTCTAATCTTACTTTTTTCACATATGC
AAAAAGGTATTGATATTTATCATTGTGGATAATTATCATTGTTGGAGTTC
TCCAATACGGCATCTTAAGAGATTTTAGTCCGATTCAAACGTTACATTTA
TTGGTACTCAATTATCTTAAGTGCCGAAACTAACTCCAAAGTGTATAAAG
TGTTTATATTTTTTTTGAATTGTTATTTTAAAAGTAATCTGATACAGGTT
ACAACAGTTTTAATATTTTGTTGCGTTTTTTTATTTTCTTTAACTCGTTT
TAAGGGTTATCATGGCGGATTCTTATGATTTCTAAAGTAAAAAAGTATTT
TGATTTTTTAAAAATATGTACATTATCATCATTTGTCTTTTAAAAGATTT
TAAATGCAGTTTTTATTATTATTACAAATAGCTATACATAAGCATCATTT
CTTTTTGATTTAATTTTATTTTAAATCCATTTTTTTTCGTTTATTTTTAA
GAAATTTTAGATTTATAGAAAAAGATATAGTTAGATTTATCATTGATGTT
TAAGATGGTTCATTTATGATCCATCATACGAAAAACCCATGTTTTGAGCT
TTTGTTCACTTGTCGTTTTAGACCAGATTGTACAAAGCTTTTTGTGTATA
AAATGTACAGAGAGTTCCATTTTTATTGTTTTTATGTACTGTCACTGGTT
TTATTTATAAATTTACATTTTTCTTGTGTTTTTTAAAGAAAAACAATTTA
AAAAAGTCTTTTGTGCGATCTACCCATTGTCGATTTTTTGAGCTGCGGTT
AAGTTAATCTCAGTAATCTTGATTTGTTTTTGCTTGAGTTGATTTTTTTA
TTAATTGTCCGATTCAGATATATCAAGGACAATGCAAGAAAGATAATCTT
TTTAATAAATCCGATGAGCCAAAAATCTGGATTGATATAGCGCTTAAAAG
ATACTGTCTTCATTATTTCCTCGCGTGGGGTTTTTCGGATTACATAGTTT
TTATTAGATATTTTCATGTTTATATATTATTGTTTATATCCTTTCTTGTT
GTTTATATTTTTGTATATAGGTCGTTCAAAAAGATAAAAAATTGTTTATT
ATTGTTAGTAAAAAGATACCTAAAAAGTTGTCAGACAAATTCTTATGATG
TTATTTTTTATTTTGAATTTTTTTTTCATTGTTTTTATTTTATTTTCATG
TCAAATTGGTTTTAAACCATGATCAGTTGATTGATACTAAATTTCTTGAT
TGGCAATTCTATATTCAAAATAATTTTGCAAAGTGACCTTGTGAGAGCTC
TGGAGACTTTTTCCCCATTGTTTATAGGACCAGATTAAGATTTCAACAAA
GAAGATTTTCGGAGAGTCTCTTTAAATTTTTGATCATATTTCAATAGCCA
AAAACCTCCCTAAAATTTTTCATCTTTTGTCAATTGGTCAATAGAGATAA
TGAATATATTTGGAAGACGTTTATTATTAGCAAAAGTGATAAAAAAAAAA
TGAAGGAGAAAAAGTTTTATTATTTATTCTAAATTTTTTAAGTTTATATT
ATTTTTTTATTTCTTTATTTATAAAAATCATACATTTATTATAGATTTTT
ATTATCTTCTTTTTCATACTTTATTATCTTTTCCTTCTTTAAGTCGTTTT
TCAGGGGAGACAAATAATCTTCTAAATTATAAAAAAATAGTCCGTTATAG
TTTTTGTTTAATAGTCTGCTTAGCTCAGGGCCTGAATGTTTATAAATTTT
CTCAAAGAAACAATAAAAAACGGACTAATAAAAAAGTATACTTCTTAACT
TGCATAATTCATAAGTTCTTGGTTAGGAAACAAAAGAATTCTTCATATTT
GTAACTCTATCGTTCAATTCATTTGCTAAGTGTTTCTTTAATGCTTCCTT
CTTCGTTTTTCTTTTAGTCCCAAGGGAATCCAATAAAAAGAAATATAATA
ATAAAAGTATTTGAAATTGTTTCAAAAGGTTTTCCCAACAACCTCAACAT
TCTCTTTAGGTCTTTGAAATAGTAATTTCTATTCCTAGATTTTTTATTTA
TTTTCCACGAATTTATGTTAGGCTACGTTAGATTCCAATAAGATCATCTA
AAACTAAAATCAAGAAGTTTTAAGCAACTCCTTGTTCCTAAGGGAGATTT
CCTGAAAAAAATACTTTTTCATTCATTTAATTGGAAAGATGATTTCTTCT
GATGCTTCGTTTTTTGAAAAAGTGCATCATCATCAATAATTTTATTTTTC
AGTTGATAAAGAAATCACATGATTTTTTGATGACAATAGAGCGAGAGAAA
CAATGAAATCATTGCTAATTAGTCAATTTAAAAAACAATTAAAAAACTAG
GTCGTTAGCTCTTGTCAATCAAATAATACATGGATTTGATGCCGAAATAA
TTTGTCTTTTTCATTTATGTTTCCAACCTTTGTTAATTTTGTATTTTATT
TTTATTTATTTTATTTTTAATTTTGTTATTTATTTTTTGTTTTTTTTTCC
TCCTTTTCGTGCCTCATTTTTTTTCTTCATCCTTTTGTTTATTTTTTTCT
TATTTACGAAAATACACGTTGCAACGTCACTTAAGCAAGACACTAGTCAT
TACCATGTTGACGTTTGCTATTCTTTTGATAAACTTTCGTCGGTTTTTTT
TTTGTCTCCTAAAGTTCACAACAAAATTAGACTTTGTTGTATTTTGTCAT
AAATAAAACGAAAAAATATGACTCGCCTTTCTTAACGTCTTTTTCCAATC
TTTTTCAAAAAATATTTTTGAATTTTCTTCGTACATAATTTTTTTCCATA
GGTGTAAAATGCAATAATACATATATCTGATTTTTTTTTAAAGATTGAGT
TTTATCAAAAATGTTTAGTGTATTTTTCACGTTCTAATAAATGTTATTAC
AAAGTGTACATAGTTTTGAATCTATAGTTCGAAAATCGAAGTCAATTTTT
ATCGATTGTCGAAAACTATTAATTTGAAATTCGAAATTATAATTTTTTAA
TTTTTTCTTGTGTGTTTAGTTTACTGTAAATAATTACCTTTGTAAATATT
AAATTTAAAAGAAACATTAATTTTTAGACACTTTTTTGTGTCATTGTAGA
TAAATATTTTTGTACATATTATCG

Coding sequence (CDS) from alignment at scaffold_202:338958..343031-

>TCONS_00051621 ID=TCONS_00051621|Name=TCONS_00051621|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_202:338958..343031- (Clytia hemisphaerica)
ATGAATTTCATGAACTTATTTAAAGTGAGCTGTAGTGAGGTGAAAGTACA
TTTTGATATGTTTTTAACTCACCACGTACAATTTCATCGAAGATTGTCCG
ACCACGATCAAAAGAAAACTTCATCACAACAACTTTACAATAATCATCAA
GATCAACAACAACAATCCAATGTAACCATGGATGACCATAATCAAAATCA
AAATCAACATCAATTAGATGTTCATCAAAACGCTCAACAAGCAGACATCG
CCGTTCATAATAATGCAGCTCAAGATATTGATTACGAAGCAATTGATCAA
GTCGCCGAGCAAATGAAAACATTCGCTGATCAATTTTATCGAGAACACAC
AACGAACAGATTCCTACAAAAGGTGAACGACAACGCATCCACAATACTGA
TTTGCAGTATGGCAGCATTGGTTGTATATCAATGTGCAAGGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032683XLOC_032683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051621-proteinTCONS_00051621-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051621-exon-scaffold_202-1575043694:338958..343031TCONS_00051621-exon-scaffold_202-1575043694:338958..343031Clytia hemisphaericaexon
TCONS_00051621-exon-scaffold_202-1510915933:338958..343031TCONS_00051621-exon-scaffold_202-1510915933:338958..343031Clytia hemisphaericaexon
TCONS_00051621-exon-scaffold_202-1491911889:338958..343031TCONS_00051621-exon-scaffold_202-1491911889:338958..343031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:338958..343031 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.045092	0.0311796	0.0229493	7.2224	4.81135	7.94513	9.49666	6.90727	7.81475	6.85649	5.12647	1.90585	1.8259	1.35549	1.1737	0.864189	0.819773	1.50269	2.28916	1.6685	2.37658	0.820929	1.08825	1.64533	2.02102	19.8249	17.2166	8.2914	6.96357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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