TCONS_00051635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051635
Unique NameTCONS_00051635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051635 ID=TCONS_00051635|Name=TCONS_00051635|organism=Clytia hemisphaerica|type=transcript|length=2208bp
CCATAATTAAAGCTCCGTTCCCCTTTCAGCACCTGCACTTTTCCAGTCAC
ttcaacaatttgaaaaaactttaattctttgaatgatgaaagcaaaaaaa
agaaaaaaagttatgaccaAAACTACTGGATGGAGGTCGACTGCCTGACT
GCTGACTGCTGATCTTTGAATCTTTCTCTTTGatggaaaaaagagaTGTG
AAAGAGGTATTCGAGTTTGAAGAACCGAGCGTGATCGAAGCGGAAAGAGT
TTCAGCAGcatttttttcacattgttTCCTGCACCACGAGCCTGACAGCC
TGACAACAACACTTCCAGTCTTTATATCTCAGTTAGCTGCATCACTTTGC
TGAAAAGACCAAAATGGAAGAATATGCAAGAGAACCTTGTCCTTACCGAA
TCATCGATGACTGTGGAGGTGCGTTTGCTATGGGTGCCATTGGAGGTGGT
TTGTTCTCATTAGTCAAAGGATGGAGAAATGCTCCTGTTGGCACCAGAAT
GAAGGGAAGTATCGCAGCAGTGAAGACGCGTGCCCCTGTTCTTGGAGGCA
ATTTTGCTGTATGGGGTGGTATGTTTTCAACATTTGATTGTTGTCTTATG
TATGTACGTGGTAAAGAGGATCCTTGGAATTCCATTGGTAGTGGTGCACT
GACAGGTGCTGTACTCATGGCTAGAGCTGGACCTGGTGCAATGGCTCGTT
CAGCAGCAGTGGGTGGTATCTTACTTGGTCTCATCGAGGGAGTTGGTATC
CTCATTACCAAAATGACCGCAGAACAGTTCAAACCAGTTATGCCACAAAT
GCCAGCAGATCCCGCCCAGCTTCCGCCACCACCCACCAAACCATCGCCCC
CGCCTCCAGATGCAACAAGTGGTGGCCAGCCTACTTTTCAATGATGTGTT
GAATTAGCATAATGAGAAGGAAATGTCAATGCTGGATGTtgtcaaaaaag
gaaaatgataatCACAATAAGATGCTATTGAATTGCAAATTATGCTTGGT
TCAACAAAAGAGTGTTGTCAATTGGTGGTATGTTATTATTGATGTTCCTT
TTGATGATGGTTGGATGAATTCAGCTTTGTTAATCGCCAAGAGAGGTTTT
CTGGCGAAGCAACCATGCAAGAAAAAAGCTTGAATGAAAGTGGATTTTTA
TGTTAGAGGTGTTTTCAGAGGAAGCAGGTTTTCTGACAGTACTTTTCAAG
GATtaaaagtgcattttatttgtcTGTAAATGTTGCTATGACCACTTGGG
TATTTAGTATCAAAAGAGAACTGATTTTGCAATGTAACTctaatgtttga
aaaggatgaATATTTGTTGCGAGAATAATCCAAACTACTTGAATTTAATT
AGACAGTCTGAACAACCGAGATACCTGAACTTGAGACTACTGTCCAGAAA
ATCTGCTTGGGGTTGAAACGCTTCAGGTTTCCCAGCCTTCCACCGAAatt
gttttagaatttttataaaacgtagatataaattttatatattttttgtc
aacaaaatGGATAATGAGAAAATTTACTCCCTtagaaaaatagaaatctc
ttaattgttttttttcgcCAACTATTTTAGCTGAATATTGAACAAATCCG
GTCTAAGTCTAAATCTAATAGAACTTTATTCcaataatcgcacgatgagt
tattttttcttctttggcgcggcttcaaagagagcaattaatcgttaatt
gcatcctgtagagagcaattaatcgttaatcacactctccaatgctgcgc
caatgtttacaaaattgattttgatgttttttcttacatttctttgcatc
gaacgttttaattgcattcgaaatttattttgtgagaaagaaaatcaata
aacaacaataaaagaaagacataaaaagaagagacaaatataaaactctc
agtgtaatttctgtaatttactttcctaactgggaaaaagtagtgaaagc
cattgtgcgattagctcgtaatcacataataactcNACTTGAGACTACTG
TCCAGAAAATCTGCTTGGGGTTGAAACGCTTCAGGTTTCCCAGCCTTCCA
CCGAAattgttttagaatttttataaaacgtagatataaattttatatat
tttttgtcaacaaaatGGATAATGAGAAAATTTACTCCCTtagaaaaata
gaaatctcttaattgttttttttcgcCAACTATTTTAGCTGAATATTGAA
CAAATCCG
Run BLAST on NCBI

protein sequence of TCONS_00051635-protein

>TCONS_00051635-protein ID=TCONS_00051635-protein|Name=TCONS_00051635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MEEYAREPCPYRIIDDCGGAFAMGAIGGGLFSLVKGWRNAPVGTRMKGSI
AAVKTRAPVLGGNFAVWGGMFSTFDCCLMYVRGKEDPWNSIGSGALTGAV
LMARAGPGAMARSAAVGGILLGLIEGVGILITKMTAEQFKPVMPQMPADP
AQLPPPPTKPSPPPPDATSGGQPTFQ
Run BLAST on NCBI

transcript from alignment at scaffold_202:552019..561856-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051635 ID=TCONS_00051635|Name=TCONS_00051635|organism=Clytia hemisphaerica|type=transcript|length=9838bp|location=Sequence derived from alignment at scaffold_202:552019..561856- (Clytia hemisphaerica)
CCATAATTAAAGCTCCGTTCCCCTTTCAGCACCTGCACTTTTCCAGTCAC
TTCAACAATTTGAAAAAACTTTAATTCTTTGAATGATGAAAGCAAAAAAA
AGAAAAAAAGTTATGACCAAAACTACTGGATGGAGGTCGACTGCCTGACT
GCTGACTGCTGATCTTTGAATCTTTCTCTTTGATGGAAAAAAGAGAGTAA
GGTCCTATACTAGAAAATTATTTTAAATTTGTTTCTCTTAAAATTGACCT
TATGGAGATAATAGCTCGGAAACTGCAGTAATAAAAACGCAACAATTCTC
CATAGTGTGAAAGAGGTATTCGAGTTTGAAGAACCGAGCGTGATCGAAGC
GGAAAGAGTTTCAGCAGCATTTTTTTCACATTGTTTCCTGCACCACGAGC
CTGACAGCCTGACAACAACACTTCCAGTCTTTATATCTCAGTTAGCTGCA
TCACTTTGCTGAAAAGACCAAAATGGAAGAATATGCAAGAGAACCTTGGT
AAGTCTAGATATAGACATAGACAGTCAGCTCTTGTATCTGAATCTGTTAA
ACAAATTTTAACTTTTGTGTTAAGGGGCGACGTCCATATTCAAAGTCGCC
ACGCGTAACGGGAAAAGACCGTTAGTGGGTAGGTATATTGGAATGTTGAG
AGTTAGCTGTGGCATTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCATGAAGACCG
TTAAGAGGGTGGGTAGGTATGTTTGAAAACTAACGGTCTTTTCCCGTTAC
GCGTGGCAAGATTGAATATGGACGTCGCCCCTAAGGTGTGAGTGCTGGTG
ATTTTTTTATTTGGATTTTTTTCTGACACTGCTGGACTGTCAATGGGCCA
TTCCAGAAAAAAAAAATTACCCCCTAATGGATGACATCAATTTTTGAAAT
AAATTTTGGCACGGAATTCCAGGCAAACTTTAAAGAGAAAGTATCGGAGC
GGAATTCCATGAATTTTACTTAATTTTGCATTAAAGTATTGGAATTCCAT
CATTTTTTTAGGTTACAGTAACGGAATTCCACGGTTTTGATAGGTATTTT
GTAAATTTGTTACGGAAATTCCGGACTTTCTTGAAAGCAATTTGCTACGG
AAATTCCATGTCGTCCAGTGTCGTCCATTATTGGGGGGTAACGAATAAAA
ACTGGAATGGCCCAATATCAATATAAAAGGGGTTGTACCCGCACCAGAAC
TCTCACGTTCCTCCACTCTGTTTTGTTTACATAGCAAAGAGGGTGACAAA
AGTTAACAACAGAGTATAAAATCGGTTGGTTCGAAACGCAGGAGACAGGA
CGCAGGAGACAGGACACAGGACGCAGGTCATANGAACAACATTATATAGA
CCTTTTTTCAAAGAGGACGTCCTGTTGAATAATCATGTAGTCCAGTCATA
AAAACAATGATAGAGCCATGCATAATTACTGTATCATGCATATTGTAATA
ATTATGCATGGTATTATCATTGTTTTTCTGCTGGACTACATAATTATTCA
ACATGGTGGCCTCTTTGAAAAAAGGTCTATTCGTCTCACCCCCCCCCCCA
CCAGAGACTGGACTCAAGATTATTGCATTTTTTCTATTTTGGTGACATCA
TCAGGCCCAAAATAGTGAAAAATTTACCAGTTCAGAGCCTAAATCCGATG
GGGTCTTTCAAAGATGCAAACTAAAAAATAAAAACAAACCTTTCGCTGTG
ACGCAATGAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACT
GAACCAATTGAACCAAATTACAATAATTGCTTCTTAAAACATAATTTTTT
ATTACATAAATTCAGAAATTGTTAACGTTTTAAACACGAGCAACGGATTC
ATAATAATTAGATAAATCAAAACAAAAATGGTAGACTAGAGCTGTGAGCA
GAGCTGCGTAGTTGTATTTTAATGACCAGCCAGGTCTTTCATTTGAGGGC
TATGCATGTTAGCCTCCAATGATGCAAGTTACCCAATCTCACGGTAGATG
TTTTGTTTTGAGAGTCCTTGCAATAGCTTATTGTTCAACTTGGAGAGGGA
AGGCCAGGCCCAATTGATTGTTTGGTTTGTGTCCTAAAAGCTTTGAAAAA
TGGGTCGGTTGGTCGGTCGTAGCTAAAATTGGAACCTTTTTTTCATTTTC
CCACCAATAACCTCAATTTTTGAAACTCCACAAGCAATCGTGCAATCCTG
GAATCCAACCGCGATTGTAAAGAAATAGCCTAAAACCCGGATCCATAAAG
GCACGCGCCGCAATCGCAAGATAACTTCTAGTTGGAGATGAAGGCGTTCG
CGACGCGTGCTTAAAGGAATACAGCTGTGACTCTCTGCTTTTAGGTGCTA
AATATTTGTTTTTAAGTACGGGTTACACTGGGACATTTTCTGTGCGCTAA
GTGGGTGTTGTTTATAAAAGAACAGGCATCGAAATAAGGGATAGAAATTT
TTTGATAAGCATGATTTTGCATCCTAAAATGGACCAATTTTCAATTTTTA
GCTTGTAAGTAATCCAAAAACGCATCGCGAATTGCAAAATGCAATACGCT
AATTCGATCCCTGAAAGAATCAAAGCAGTCAGTTAAAAAAGAACCGCAGA
GAAAGTAGTTATCATGTGAAAAGGAGGTAAATTCTTTTTAATTTTTCCGA
CTCCAAGTGAAACACTTTTTCTCAAAAATTTAGAGTTGGTCGGAGGACAC
GAACCAAACTATCAATTGGGCCTGGCCGAATGTTTGTAAACATAGAATTT
TTTTCATAGTAGTTATTTGGGGGGTCGTATTTAGGCAGGGCGGTCGGATC
TAGGACCATTCACGGCAGCCTCCTACAGGCTAGCTCTAAAGCTCTAAAAC
AGCAACTAATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAA
ACTATAAAGTGCACTTACAAACATCAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTACAAACATCAAT
ATGTCAGATCTAACAAAATTAATAACGGCACTGTCATCATTGACAATAAA
ACAAAGGATTTTCTGTCAAGAGTCTTGTAAACATTCACGTAAACATTCCA
ACAACTTCCATCGAAATGATCTGTCACTGCAAGTCTACCATTTTTAATGC
AGTCCGAGGATTGATTTGAGAACGCTTGCAGAACGCTTGTGGCGCGGATG
AAAAACTTTAATCTGTCAATCATCTTCTCAAGCGAAGAGACGCGAAGCGA
TTCTAGCTTTACGATAGTGCCGCAGATCATCAGTGGATAATATTCAATTA
TCATTATCCCTTTATTTTCATTCCTAGAACTTTTGCAAAAAAAAAGAAAA
ATAGAAAAGTTGTATTTATTACAAATCTCCTATGTGGCTTTTTTTTGGAA
ACTGCAAAAAACTGATTTTTGTCCCGCTTTTGCGGGACTTTATCTTAAGT
GCTTGCGTGCAGCATAGGGTACAAAGTCCAAATATGCGTTTCCCGTAATT
TTTGTATGAAGAGCTAGGTCTATATTGTCCTAACTCCCTTCGTTATTTTT
GGTGAAATTTCTAATTCAATGACCAGGGGTCAGTCCTCTTAAGGGATCCT
CGACAAAAAACTTTTAATTTTTTTATCGGCATTGGGCCGATTAGGGGTGG
GGGGTCCAACTGCATACCGATAAAAAAACAAGTATTGGGACAAGACGAAA
ATCCTTTCCGCCACAATTTCTTTCTGATTTCGTCCACAAACTCCATGAAA
GAATGTAATTTCACTTGCTTTCACCGCGCACAAATTTGCAACTTTAAAAA
GTACAGTTTTGAATTAGCTTTAATAACAAAACTCTTTTTCCATTGGCCAG
CCTGCTGCCTTTACCTTCAAAATGTTGCGACTTCATTGCATCTTTTTAAC
TTCTGTTTTGATTAACAATACAATGCGGGTATGAACAAATTCAATGTTAA
AATTTAATAGACAAAAATTCAACGATGACAGGTGGGAAGGCGAGATCAAC
GCGACGGCGGACATGATTGGAGAAAATTGTGTTTGTGATCGAAGAGATAA
TTAAGTTTGTTCAGGTTTGTTTTGAAAATTTTGTCAGATAAGAGCAAGGG
GGGAGGGGGTCTGAAGCATCAGCCCAATGCCAAGAAATTTGAAAGTTTTT
TGTCGAGGACCCCTATCTCCTTTTCAAACTTGAGATATCACATTTTAAAG
TTTTTTGGGAATCCAGTGACGTCATAGGGTCCCTTTATTACCCCCAATAA
AAGTCAACGGTCAATTTATGAATTTCAAATTTTTGCTGTGAATGGTGTGG
CCCATACTCCAAGAGCGCCAAGAGTGCGAAAAAAAAAAAAACGTCAAAAA
ATCTCTAGACATGCACTGCGCGTGCAATCAATTTGAAAACCTAGCAAACA
TGCCCTGAACATGTCCGGGGCAGTTTGGGTCATGTTTAGAACTTGAGACT
TTTTTAGTATATTTTTTAGGCCTTCAGTTTAAGCTTAATTCCTATATCAG
GATTAGATTAGTCTTACCTCTTTTATCTTTCCCTTTACAACAATACAATG
CTAACCCGTTGACACAACACATTGACAAGTAATCCCTGTGAGAGAAGTTT
ATATCGAAACCTGCAACAAAAACAAAAGTGGTCTCTTCTACTGATTGTTT
CCCAAAGCTCCTTCGCAGCTATTTATCAAATTTTGAATAAAAGAAGAACT
TTAAATCTTAAATATTTTCATTTTGAAGAATTGGTGCAAAGAAGTGAAAC
CATGGAAAAGTTTCATTTTTTAATGGTTCAATCGAAATAGAGGATTTGGA
AAACTTTCTATGTTTTTTTTTTTTTGCACAAACCCCTGTAACTATGGGCG
AGCACCCTGTTGCTAAGATGTTGGCTTGAAATCGAAAGTAAAACCACTGA
AAATGAAGGTAAAATCAGCCCTCACTCCAAATCCCGTAATCTTGATATAG
GAGTTTGAGCATAGACTGGCCATAAAGCTTCTCATTTTTCAAGTTTTTTT
TTTTAATTTTTGACCATTGAATTTGTTGTAGTCTAAAAAATGTATCTAAA
TATTATTGATTCATGCTTCAAGTTATCTAAAAGAATATTTTAACTTTCAG
TCCTTACCGAATCATCGATGACTGTGGAGGTGCGTTTGCTATGGGTGCCA
TTGGAGGTGGTTTGTTCTCATTAGTCAAAGGATGGAGAAATGCTCCTGTT
GTGAGTATTCTTTTATACATATCTTTAACATTTCATGAATAATTGACAAA
GCTATTTACAACTAAAAGCTCTAATATTATTATTGCATACTATTGTCAGT
TTTTTAAACTGACTGAAAGAAACTTTGCTGACACAAATATGAAGAAATCC
TTTTGCTCATTCTGCTTTTTCAACATAAGAGATGTGCACTCTTTTCTTTA
TGTGACCGTACAAACGATTCAAAGGGAGAGATTCTTGCCAGAAATTTGCC
AGCTTTGTGTTTTTTTTGCAGTTCGCATGTTCTTTGTTTGGTGTAGTCAG
CAATGTAATAACACTAACTGGCAAATTGCTGGCTGACATAGGGTCGGAAA
AGTGTCGGTAAAAAATGTAATCTAATTTTCTTTGCTGCTGGAAAATTGCC
AGCTATTTTTCTTTCTTGCCGGCAAATTGCCAGATATTTTCGTTTGTTAC
CAGCAAATTGCCATCTATTTTTCTTTGTTACTGGCAGATTGCCGGCAAAA
GTCTCCCCTTGGGCCAAACCCTTTTCTAAAAAACAAGTTTACACAAATAT
TGCTGGCAAACTGTCTACTGGCTTATTGCGGGCTGTAATTGATAGAATGC
CAGACTCAACAGGAGTCTTTCAACAGAATTTTTTGTTATCTTAATAATAT
AAGGCTATGTTTCAGAAAAGAGTATTCATATTTTTTGATTGGCTTCCTTT
CTTTAGGGCACCAGAATGAAGGGAAGTATCGCAGCAGTGAAGACGCGTGC
CCCTGTTCTTGGAGGTTTGTTTCCTTTTGATACAGTGGAGTCTTCTTTAC
TCGGACCTCTATAGCAAAAGGTCTCCTTAACTTAACTTGAACGAGTTTTT
GGTACCTTCAGTTAATAATGCCTTATAAGCCTCACTCAAACAAATTTGTG
TTCACCATCCTCTGTTTTTTCTAAGCTACTACAACTACGATCATGTTCAA
AAATAGTGTGACATTTAGTGAACTCAAAAATTGAAAAAAATATAGTATTT
CTTGAATACCTCGAGAAATATTTCATATTTTATATTATGATCGGTATTTA
CACAAAAGAACATATTTTGATGAAAAAAATGCTAAAATGTGTGGCTCCAG
GTCCAAATATGTCCAAATAAGTGTTTTGTCGGCCACCTCAAAGGAGGAAA
TGGTTTGTTTGAAAATGACACTTAAACGGTAACTAGAGGTATCATATTAT
CTCAAAACAGATAAAAGAGCAAAATTTTGAGACTGGTTGGCCACCAGTGT
TGTCAGCCACATAAACGACTCATAGCTTATCTTGAAATATCTTGTTTAAC
CCAGTAAGCCACTTAATTTCGCTCCAAAACAATTGGAAAGGTTAATCATT
CTACTTATCCTTGGTGAAAAAATAAACTGTTAGCCACGAAAAATACTCAT
TTTATTAACATAATTGTCAGCCACTTTGAAAATGTCACAAAACAGGCCTT
TATTTTTGAACACGATCCTACATGGTATAAATTTGAGAGTTTCTTCTTGA
TACCTCTGAGAAATCATTGTCAGAAGTATAGACGTAAAATAGGGTGACTC
TATTTGAAGTGCGTGCTATTTTCAACTTTCCTGTCAACTTCGGGTATGGT
TTCTTTTCAAAACTTACTGAAAACCTTTTTGGTTTTTTGCTTAGATCTGT
TAACTTTTTATTCCAGGCAATTTTGCTGTATGGGGTGGTATGTTTTCAAC
ATTTGATTGTTGTCTTATGTATGTACGTGGTAAAGAGGATCCTTGGAATT
CCATTGGTAGTGGTGCACTGACAGGTGCTGTACTCATGGCTAGAGGTATA
ATAACTATTTTCATTACTTAGAAATATTGGAAAATGGTATAATCGAAGCT
GATCTCTCTTCCTCTAAGCAGCTTTGTAGATTACGCCTGACAGGTTTTAT
GTGGTTTCTATAATTATAACCCTTTTCAAAATGCATTTTCTTTTTGTTAC
TTCTGTGAGATTGATATAAGTATTGCTTTTATACAATGTCAATAAGCAAA
GGTACTGCTTTAACTTTAAAAAAAATAAAAACATTAAATTACCTATAATT
ACCTATTACATATAATTTTGGTGTATTCCAGCTGATAGCATTATGTTTAC
AAATTGTTTTTTCAATATCTAGCTGGACCTGGTGCAATGGCTCGTTCAGC
AGCAGTGGGTGGTATCTTACTTGGTCTCATCGAGGGAGTTGGTATCCTCA
TTACCAAAATGACCGCAGAACAGTTCAAACCAGGTTAGTAGATGATACAT
TTTATGTTCTATTCAAGATTTAATAATCATTTTTCAAAATTAGTCCATCC
TTGTTATACTCTGTTTTTCTCTCTTAAACTTTTTGTCTCCCTATTTTTTT
CGTTTGACTACTGTGAATCTAAATGGCTTACTACCTAAACTTGGGACTAA
CTATAAGAAGAAATTCATATCTTCAAGGACCTCAATGACCTTGCATTCGA
CACACATAGTGCCAAACTAACAGGTGTTATCCATGGTTATATTTTATGCT
TTTATATCTAGTTATGCCACAAATGCCAGCAGATCCCGCCCAGCTTCCGC
CACCACCCACCAAACCATCGCCCCCGCCTCCAGATGCAACAAGTGGTGGC
CAGCCTACTTTTCAATGATGTGTTGAATTAGCATAATGAGAAGGAAATGT
CAATGTAAGAATATTATTTGTGTAATTGTACACTTGCTCTNCCACAGTGA
GAAGAAAATGTCAATGTAAGAATATTTGTGTAATTGTACACTTGCTCTCT
GTATTTTTCTTTCAACGTTACTAGACGAGTGGCACCATATAAGAAACAAA
CTATGAGTTACGGCGCCCCTTATCTCCTTGTTGGCAAATATTTTAGGTGA
CCCCTAAGCCAATGACTCGTCAATTTTTTTGTTGAAAATCCATTGTGTTT
CATGAAAGATATGTTTTACAAACAATCAAGCAAATACAACAGTTCTGAGA
CATTTTTTTAGACATTCCATGGTGTAGCTTATGATAAAACAAAATCAAGC
TCATAAAAAAATCATAGAATCCAGCCCACGTCTATTTTTCGAGGTTTTAG
GGATGTCAAGAAAGGGGATCAGATGTGAAAACTGCAGTGCTTATAATTTT
ACTAACCACAGTACCTTGTTATAATTCAAGTTTCTATAATTTAGATCTTA
TGTTTTGCAGGCTGGATGTTGTCAAAAAAGGAAAATGATAATCACAATAA
GATGCTATTGAATTGCAAATTATGCTTGGTTCAACAAAAGAGTGTTGTCA
ATTGGTGGTATGTTATTATTGATGTTCCTTTTGATGATGGTTGGATGAAT
TCAGCTTTGTTAATCGCCAAGAGAGGTTTTCTGGCGAAGCAACCATGCAA
GAAAAAAGCTTGAATGAAAGTGGATTTTTATGTTAGAGGTGTTTTCAGAG
GAAGCAGGTTTTCTGACAGTACTTTTCAAGGATTAAAAGTGCATTTTATT
TGTCTGTAAATGTTGCTATGACCACTTGGGTATTTAGTATCAAAAGAGAA
CTGATTTTGCAATGTAACTCTAATGTTTGAAAAGGATGAATATTTGTTGC
GAGAATAATCCAAACTACTTGAATTTAATTAGACAGTCTGAACAACCGAG
ATACCTGAACTTGAGACTACTGTCCAGAAAATCTGCTTGGGGTTGAAACG
CTTCAGGTTTCCCAGCCTTCCACCGAAATTGTTTTAGAATTTTTATAAAA
CGTAGATATAAATTTTATATATTTTTTGTCAACAAAATGGATAATGAGAA
AATTTACTCCCTTAGAAAAATAGAAATCTCTTAATTGTTTTTTTTCGCCA
ACTATTTTAGCTGAATATTGAACAAATCCGGTCTAAGTCTAAATCTAATA
GAACTTTATTCCAATAATCGCACGATGAGTTATTTTTTCTTCTTTGGCGC
GGCTTCAAAGAGAGCAATTAATCGTTAATTGCATCCTGTAGAGAGCAATT
AATCGTTAATCACACTCTCCAATGCTGCGCCAATGTTTACAAAATTGATT
TTGATGTTTTTTCTTACATTTCTTTGCATCGAACGTTTTAATTGCATTCG
AAATTTATTTTGTGAGAAAGAAAATCAATAAACAACAATAAAAGAAAGAC
ATAAAAAGAAGAGACAAATATAAAACTCTCAGTGTAATTTCTGTAATTTA
CTTTCCTAACTGGGAAAAAGTAGTGAAAGCCATTGTGCGATTAGCTCGTA
ATCACATAATAACTCNACTTGAGACTACTGTCCAGAAAATCTGCTTGGGG
TTGAAACGCTTCAGGTTTCCCAGCCTTCCACCGAAATTGTTTTAGAATTT
TTATAAAACGTAGATATAAATTTTATATATTTTTTGTCAACAAAATGGAT
AATGAGAAAATTTACTCCCTTAGAAAAATAGAAATCTCTTAATTGTTTTT
TTTCGCCAACTATTTTAGCTGAATATTGAACAAATCCG

Coding sequence (CDS) from alignment at scaffold_202:552019..561856-

>TCONS_00051635 ID=TCONS_00051635|Name=TCONS_00051635|organism=Clytia hemisphaerica|type=CDS|length=3186bp|location=Sequence derived from alignment at scaffold_202:552019..561856- (Clytia hemisphaerica)
TTATGCCACAAATGCCAGCAGATCCCGCCCAGCTTCCGCCACCACCCACC
AAACCATCGCCCCCGCCTCCAGATGCAACAAGTGGTGGCCAGCCTACTTT
TCAATGACTGGACCTGGTGCAATGGCTCGTTCAGCAGCAGTGGGTGGTAT
CTTACTTGGTCTCATCGAGGGAGTTGGTATCCTCATTACCAAAATGACCG
CAGAACAGTTCAAACCAGGCAATTTTGCTGTATGGGGTGGTATGTTTTCA
ACATTTGATTGTTGTCTTATGTATGTACGTGGTAAAGAGGATCCTTGGAA
TTCCATTGGTAGTGGTGCACTGACAGGTGCTGTACTCATGGCTAGAGGGC
ACCAGAATGAAGGGAAGTATCGCAGCAGTGAAGACGCGTGCCCCTGTTCT
TGGAGTCCTTACCGAATCATCGATGACTGTGGAGGTGCGTTTGCTATGGG
TGCCATTGGAGGTGGTTTGTTCTCATTAGTCAAAGGATGGAGAAATGCTC
CTGTTATGGAAGAATATGCAAGAGAACCTTGTTATGCCACAAATGCCAGC
AGATCCCGCCCAGCTTCCGCCACCACCCACCAAACCATCGCCCCCGCCTC
CAGATGCAACAAGTGGTGGCCAGCCTACTTTTCAATGACTGGACCTGGTG
CAATGGCTCGTTCAGCAGCAGTGGGTGGTATCTTACTTGGTCTCATCGAG
GGAGTTGGTATCCTCATTACCAAAATGACCGCAGAACAGTTCAAACCAGG
CAATTTTGCTGTATGGGGTGGTATGTTTTCAACATTTGATTGTTGTCTTA
TGTATGTACGTGGTAAAGAGGATCCTTGGAATTCCATTGGTAGTGGTGCA
CTGACAGGTGCTGTACTCATGGCTAGAGGGCACCAGAATGAAGGGAAGTA
TCGCAGCAGTGAAGACGCGTGCCCCTGTTCTTGGAGTCCTTACCGAATCA
TCGATGACTGTGGAGGTGCGTTTGCTATGGGTGCCATTGGAGGTGGTTTG
TTCTCATTAGTCAAAGGATGGAGAAATGCTCCTGTTATGGAAGAATATGC
AAGAGAACCTTGTTATGCCACAAATGCCAGCAGATCCCGCCCAGCTTCCG
CCACCACCCACCAAACCATCGCCCCCGCCTCCAGATGCAACAAGTGGTGG
CCAGCCTACTTTTCAATGACTGGACCTGGTGCAATGGCTCGTTCAGCAGC
AGTGGGTGGTATCTTACTTGGTCTCATCGAGGGAGTTGGTATCCTCATTA
CCAAAATGACCGCAGAACAGTTCAAACCAGGCAATTTTGCTGTATGGGGT
GGTATGTTTTCAACATTTGATTGTTGTCTTATGTATGTACGTGGTAAAGA
GGATCCTTGGAATTCCATTGGTAGTGGTGCACTGACAGGTGCTGTACTCA
TGGCTAGAGGGCACCAGAATGAAGGGAAGTATCGCAGCAGTGAAGACGCG
TGCCCCTGTTCTTGGAGTCCTTACCGAATCATCGATGACTGTGGAGGTGC
GTTTGCTATGGGTGCCATTGGAGGTGGTTTGTTCTCATTAGTCAAAGGAT
GGAGAAATGCTCCTGTTATGGAAGAATATGCAAGAGAACCTTGTTATGCC
ACAAATGCCAGCAGATCCCGCCCAGCTTCCGCCACCACCCACCAAACCAT
CGCCCCCGCCTCCAGATGCAACAAGTGGTGGCCAGCCTACTTTTCAATGA
CTGGACCTGGTGCAATGGCTCGTTCAGCAGCAGTGGGTGGTATCTTACTT
GGTCTCATCGAGGGAGTTGGTATCCTCATTACCAAAATGACCGCAGAACA
GTTCAAACCAGGCAATTTTGCTGTATGGGGTGGTATGTTTTCAACATTTG
ATTGTTGTCTTATGTATGTACGTGGTAAAGAGGATCCTTGGAATTCCATT
GGTAGTGGTGCACTGACAGGTGCTGTACTCATGGCTAGAGGGCACCAGAA
TGAAGGGAAGTATCGCAGCAGTGAAGACGCGTGCCCCTGTTCTTGGAGTC
CTTACCGAATCATCGATGACTGTGGAGGTGCGTTTGCTATGGGTGCCATT
GGAGGTGGTTTGTTCTCATTAGTCAAAGGATGGAGAAATGCTCCTGTTAT
GGAAGAATATGCAAGAGAACCTTGTTATGCCACAAATGCCAGCAGATCCC
GCCCAGCTTCCGCCACCACCCACCAAACCATCGCCCCCGCCTCCAGATGC
AACAAGTGGTGGCCAGCCTACTTTTCAATGACTGGACCTGGTGCAATGGC
TCGTTCAGCAGCAGTGGGTGGTATCTTACTTGGTCTCATCGAGGGAGTTG
GTATCCTCATTACCAAAATGACCGCAGAACAGTTCAAACCAGGCAATTTT
GCTGTATGGGGTGGTATGTTTTCAACATTTGATTGTTGTCTTATGTATGT
ACGTGGTAAAGAGGATCCTTGGAATTCCATTGGTAGTGGTGCACTGACAG
GTGCTGTACTCATGGCTAGAGGGCACCAGAATGAAGGGAAGTATCGCAGC
AGTGAAGACGCGTGCCCCTGTTCTTGGAGTCCTTACCGAATCATCGATGA
CTGTGGAGGTGCGTTTGCTATGGGTGCCATTGGAGGTGGTTTGTTCTCAT
TAGTCAAAGGATGGAGAAATGCTCCTGTTATGGAAGAATATGCAAGAGAA
CCTTGTTATGCCACAAATGCCAGCAGATCCCGCCCAGCTTCCGCCACCAC
CCACCAAACCATCGCCCCCGCCTCCAGATGCAACAAGTGGTGGCCAGCCT
ACTTTTCAATGACTGGACCTGGTGCAATGGCTCGTTCAGCAGCAGTGGGT
GGTATCTTACTTGGTCTCATCGAGGGAGTTGGTATCCTCATTACCAAAAT
GACCGCAGAACAGTTCAAACCAGGCAATTTTGCTGTATGGGGTGGTATGT
TTTCAACATTTGATTGTTGTCTTATGTATGTACGTGGTAAAGAGGATCCT
TGGAATTCCATTGGTAGTGGTGCACTGACAGGTGCTGTACTCATGGCTAG
AGGGCACCAGAATGAAGGGAAGTATCGCAGCAGTGAAGACGCGTGCCCCT
GTTCTTGGAGTCCTTACCGAATCATCGATGACTGTGGAGGTGCGTTTGCT
ATGGGTGCCATTGGAGGTGGTTTGTTCTCATTAGTCAAAGGATGGAGAAA
TGCTCCTGTTATGGAAGAATATGCAAGAGAACCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032687XLOC_032687Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051635-proteinTCONS_00051635-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051635-exon-scaffold_202-1575043694:561661..561856TCONS_00051635-exon-scaffold_202-1575043694:561661..561856Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:561359..561551TCONS_00051635-exon-scaffold_202-1575043694:561359..561551Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:556457..556556TCONS_00051635-exon-scaffold_202-1575043694:556457..556556Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:555693..555750TCONS_00051635-exon-scaffold_202-1575043694:555693..555750Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:554662..554790TCONS_00051635-exon-scaffold_202-1575043694:554662..554790Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:554224..554334TCONS_00051635-exon-scaffold_202-1575043694:554224..554334Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:553803..553945TCONS_00051635-exon-scaffold_202-1575043694:553803..553945Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1575043694:552019..553296TCONS_00051635-exon-scaffold_202-1575043694:552019..553296Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:561661..561856TCONS_00051635-exon-scaffold_202-1510915933:561661..561856Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:561359..561551TCONS_00051635-exon-scaffold_202-1510915933:561359..561551Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:556457..556556TCONS_00051635-exon-scaffold_202-1510915933:556457..556556Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:555693..555750TCONS_00051635-exon-scaffold_202-1510915933:555693..555750Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:554662..554790TCONS_00051635-exon-scaffold_202-1510915933:554662..554790Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:554224..554334TCONS_00051635-exon-scaffold_202-1510915933:554224..554334Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:553803..553945TCONS_00051635-exon-scaffold_202-1510915933:553803..553945Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1510915933:552019..553296TCONS_00051635-exon-scaffold_202-1510915933:552019..553296Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:561661..561856TCONS_00051635-exon-scaffold_202-1491911889:561661..561856Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:561359..561551TCONS_00051635-exon-scaffold_202-1491911889:561359..561551Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:556457..556556TCONS_00051635-exon-scaffold_202-1491911889:556457..556556Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:555693..555750TCONS_00051635-exon-scaffold_202-1491911889:555693..555750Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:554662..554790TCONS_00051635-exon-scaffold_202-1491911889:554662..554790Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:554224..554334TCONS_00051635-exon-scaffold_202-1491911889:554224..554334Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:553803..553945TCONS_00051635-exon-scaffold_202-1491911889:553803..553945Clytia hemisphaericaexon
TCONS_00051635-exon-scaffold_202-1491911889:552019..553296TCONS_00051635-exon-scaffold_202-1491911889:552019..553296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:552019..561856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.2578	30.8765	22.6782	18.8721	30.301	21.0308	26.8527	30.2512	34.5275	30.8963	46.1707	43.5085	74.8214	86.8074	57.0004	57.1306	53.8038	59.2601	37.7084	34.1141	75.2422	80.0772	65.3461	64.5746	37.5289	41.8825	44.129	61.3213	44.5994	44.3686
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Blast
[Close]
BLAST of TCONS_00051635 vs. Swiss-Prot (Human)
Match: TI17A (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.362e-42
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:  364 MEEYAREPCPYRIIDDCXXXXXXXXXXXXLFSLVKGWRNAPVGT--RMKGSIAAVKTRAPVLGGNFAVWGGMFSTFDCCLMYVRGKEDPWNSIGSGALTGAVLMARAGPGAMARSAAXXXXXXXXXXXXXXXXTKMTAEQF 780
            MEEYAREPCP+RI+DDCGGAF MG IGGG+F  +KG+RN+PVG   R++GS+ A+KTRAP LGG+FAVWGG+FS  DC ++ VRGKEDPWNSI SGALTGA+L AR GP AM  SAA+GGILL LIEG GIL+T+  + QF
Sbjct:    1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQF 141
The following BLAST results are available for this feature:
BLAST of TCONS_00051635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TI17A1.362e-4269.50Mitochondrial import inner membrane translocase su... [more]
back to top