TCONS_00051647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051647
Unique NameTCONS_00051647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051647 ID=TCONS_00051647|Name=TCONS_00051647|organism=Clytia hemisphaerica|type=transcript|length=1677bp
ttagcatcaatttgacgttagtcgtgggaagaatcgatatgtgagtgacc
ccttaggGCAATGTTTATGGTTTTTCTGAAGTACATAAGATGGGAAGACC
TAAAAAAACAGAAAAGGAGAAATTAGGGGAACAATTCTATCAAAAGCTAT
TGGCAAAGAAAGTCACTTTTGAGGTGGAAATGATGGTTTTActtgcataa
ctttttattgcaGTACCTCCGTCTTGTCCCGGTTTGACTTtgtatttttt
gcaattttttgtatttgcgatgttagcttttttagacttatgcaaataaa
tggatagaaatagaaatgacAACCGGTAGTTGAGTACATCAGAAACATGG
ACAGTgttaatttttgataaaaaaattaataagtcTCCTTTGGCTTTGCT
TCTTTTTCAATGAGGAACGATACCCCATATTTAAGGACGTCCTTATTTAA
GGACCGGGTCCAATTGAAAAAAGCTATTTTTTATTAGGTTTCTGGATCCA
TATTTCATgctgaatttttttgcaaaaataaaaaaaactgtatTTGACCT
GCTTTTTATAGTTTGCAATTTTTGTACAGAAGCAATACCAAATTGCACAA
GGCCGCCATTCCAAATAACTTGTTTTTGTGAcaattttaggtaaaaaaat
gAGTCGATCAGTTAGTCGGACAGAGCCTAAACAAAGAAtcaaatagaatt
tctattattgATTTTAAAGATTGATTGGTTAGGATTTTTACGATCTTGAT
TTTTAGGGATTCACCTGGGGACAGTGAATACAAAAGACAAGTGGATGACA
AGCTACATCGGAAGAAAGAAAGATcagttaaaacaaaagaaattgagCTA
AAACACGACAAGCGTTATCAGAGAGATAAACATCGTTCAAAGGATGAAAG
AAGTAGAGATACAATTTCTGGCGATGACAGTAGAAAAAAACATGAACTAG
AACAGGATTTGAAGAGGACTCACAATAAAGAACATCGTAAACATGATAAT
GAATGGGAGCACAAACAGCGGCTTTCCCACTCAGATTCTAATGAGAAGCA
TTCAGGGCATGATCATGATCACAATCATTCTGATAAAAAACATgacatta
aaattaaaaaggaaCCCTCAGGGTGGGATGATGAAAAGCCACGTCCTGAC
CAAACAGAAAATAAACGTAGACAAGAAGAAGATAGGGATAGAGACCGTGA
AAAAAGGGATAGAAACAGACATAATAATAGGGATAGAGACGGACATGATG
TGCATAGAGATAGAAACTCACGCGATAATAGAGATAATCAGAATAGAAAT
GATTCTAATAGACAAAGACATTCAAACCGTGAATGGGATAGGGGTAAGCG
TGCTAACAGAAGAGAAGAAGATGACTCAAATTTTAATTTTGGTGCCGAAG
GAAGGGATGAAAGTAGCACCAATGACAAAAAAGAAACCGTGTCGAAGGAG
GAACCAAATTATGAATTATCTGGGAAACTTACCGAATATACAAATACATA
CAATggaGTTGTCATTAAATATAATGAACCTTCAGAAGCAAGGAAGCCTA
AAACAAAATGGAGACTTTATCCATTCAAAGGAGACAAATCTTTACcctta
ttaCAAATCCACAGACAGAGTGCCTTCTTGCTGGGCAGGGATCGAAAGGT
ATTCAGATACAACTAACAAGAAACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_202:684933..687782-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051647 ID=TCONS_00051647|Name=TCONS_00051647|organism=Clytia hemisphaerica|type=transcript|length=2850bp|location=Sequence derived from alignment at scaffold_202:684933..687782- (Clytia hemisphaerica)
TTAGCATCAATTTGACGTTAGTCGTGGGAAGAATCGATATGTGAGTGACC
CCTTAGGGCAATGTTTATGGTTTTTCTGAAGTACATAAGATGGGAAGACC
TAAAAAAACAGAAAAGGAGAAATTAGGGGAACAATTCTATCAAAAGCTAT
TGGCAAAGAAAGTCACTTTTGAGGTGGAAATGATGGTTTTACTTGCATAA
CTTTTTATTGCAGTACCTCCGTCTTGTCCCGGTTTGACTTTGTATTTTTT
GCAATTTTTTGTATTTGCGATGTTAGCTTTTTTAGACTTATGCAAATAAA
TGGATAGAAATAGAAATGACAACCGGTAGTTGAGTACATCAGAAACATGG
ACAGTGTTAATTTTTGATAAAAAAATTAATAAGTCTCCTTTGGCTTTGCT
TCTTTTTCAATGAGGAACGATACCCCATATTTAAGGACGTCCTTATTTAA
GGACCGGGTCCAATTGAAAAAAGCTATTTTTTATTAGGTTTCTGGATCCA
TATTTCATGCTGAATTTTTTTGCAAAAATAAAAAAAACTGTATTTGACCT
GCTTTTTATAGTTTGCAATTTTTGTACAGAAGCAATACCAAATTGCACAA
GGCCGCCATTCCAAATAACTTGTTTTTGTGACAATTTTAGGTAAAAAAAT
GAGTCGATCAGTTAGTCGGACAGAGCCTAAACAAAGAATCAAATAGAATT
TCTATTATTGATTTTAAAGATTGATTGGTTAGGATTTTTACGATCTTGAT
TTTTAGGGATTCACCTGGGGACAGTGAATACAAAAGACAAGTGGATGACA
AGCTACATCGGAAGAAAGAAAGATCAGTTAAAACAAAAGAAATTGAGCTA
AAACACGACAAGCGTTATCAGAGAGATAAACATCGTTCAAAGGATGAAAG
AAGTAGAGATACAATTTCTGGCGATGACAGTAGAAAAAAACATGAACTAG
AACAGGATTTGAAGAGGACTCACAATAAAGAACATCGTAAACATGATAAT
GAATGGGAGCACAAACAGCGGCTTTCCCACTCAGATTCTAATGAGAAGCA
TTCAGGGCATGATCATGATCACAATCATTCTGATAAAAAACATGACATTA
AAATTAAAAAGGAACCCTCAGGGTGGGATGATGAAAAGCCACGTCCTGAC
CAAACAGAAAATAAACGTAGACAAGAAGAAGATAGGGATAGAGACCGTGA
AAAAAGGGATAGAAACAGACATAATAATAGGGATAGAGACGGACATGATG
TGCATAGAGATAGAAACTCACGCGATAATAGAGATAATCAGAATAGAAAT
GATTCTAATAGACAAAGACATTCAAACCGTGAATGGGATAGGGGTAAGCG
TGCTAACAGAAGAGAAGAAGATGACTCAAATTTTAAGTATGATTTTATAT
TTTCATTTTCAAAATTTGAGTTAAAAGTAACATGCTTCCTACATTACCCT
AAGAAATGAAGAGTTCTTGAATTTAAAGACCAATGGAATAGCCACATTTT
AACAAATCAATTTCTAAAAAATAATAAACTGACTAGTATTCCAGAATTTT
GATACAAGTTAGGCTTGATGATATCATTTTTGGAACCATTCTCAAATCAC
AGTACATATTGCTCCTTGATCATTAGTTTTGGTGCCGAAGGAAGGGATGA
AAGTAGCACCAATGACAAAAAAGAAACCGTGTCGAAGGAGGAACCAAATT
ATGAATTATCTGGGAAACTTACCGAATATACAAATACATACAATGTAAAT
GTTTATCAACTTTCTTTTCAATTTTCTCTGATTAGTTTGCTTTCTCTTTG
TAAAAATTGTATCATAATTATTTTGAAGTAAAACATTTTATGAAAGAACA
AGGGTGATCAAGGTTGGGATCAGTTTACTGGTCAACAGTAACTTTTTCAA
CTTGAAAATTATTAGAAATTCCTATTGAAGTCAAAATCTTTTATATAGAT
TCATAATAACAGCTTGTTAAGTTTCATCCAGATCTAAGATGACACTTTTG
ATTTAAATTTCTATTTAAAGTTCTATTTTTTTATTTTAGGGAGTTGTCAT
TAAATATAATGAACCTTCAGAAGCAAGGAAGCCTAAAACAAAATGGAGAC
TTTATCCATTCAAAGGAGACAAATCTTTACGTAAGTTTTAATAAAGAGAA
TACAGCTACAGGGCCTACCAGGACGACAGGTTTTTTATAAGGTAGAAGAC
AGCCCAACCATAAATTTCTAAAGACATGTTGTGCTGTCAGGATGTCTACA
CAACGCGTTGAGTTTGCAAAGTAATCAGTTTTTTACTCAAGATTCCTTTT
ACTTTCCAAGGGGATATTCAGGGTTGCCTGAAATGTCTGGAATTAAGTCA
AAGTTAAAGTCTGGAAATGTCTGGAATAAGTCTGGAATTGGCATACTTAA
GTCTAAAAAAGTCTGAAATAGGTATACCTGTCTGGAAAAGATTTGAAGGA
AATAGTCCTGAATGAAGTGTAGTAAACTTTCCGGAAATGGGAAACTTTCA
TCTGATGTATTCATCAATCTGGCTTTTCAAATGACCGTTAAAGAAAAACT
AAAAATCTTCCCAATGGATAAAATGTCTGGAAAATATTGCGTGTTTCGCT
AAAATATCTGGAAAATATTTGGCATTTTCAGGTAAAGAATCTGGAAAAAA
CATGGCTTTTGAGACTAAAAATCTGGAATTTTCAACTTGGCAAACCTGTA
GCAACCCTTAATGATCTGGATTTTAAAGGAGCTAAATTTACTTGTTTTTC
CTTCCTTTTTATTTTCAGCCTTATTACAAATCCACAGACAGAGTGCCTTC
TTGCTGGGCAGGGATCGAAAGGTATTCAGATACAACTAACAAGAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032691XLOC_032691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051647-exon-scaffold_202-1575043694:686397..687782TCONS_00051647-exon-scaffold_202-1575043694:686397..687782Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1575043694:686039..686156TCONS_00051647-exon-scaffold_202-1575043694:686039..686156Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1575043694:685653..685743TCONS_00051647-exon-scaffold_202-1575043694:685653..685743Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1575043694:684933..685014TCONS_00051647-exon-scaffold_202-1575043694:684933..685014Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1510915933:686397..687782TCONS_00051647-exon-scaffold_202-1510915933:686397..687782Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1510915933:686039..686156TCONS_00051647-exon-scaffold_202-1510915933:686039..686156Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1510915933:685653..685743TCONS_00051647-exon-scaffold_202-1510915933:685653..685743Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1510915933:684933..685014TCONS_00051647-exon-scaffold_202-1510915933:684933..685014Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1491911889:686397..687782TCONS_00051647-exon-scaffold_202-1491911889:686397..687782Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1491911889:686039..686156TCONS_00051647-exon-scaffold_202-1491911889:686039..686156Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1491911889:685653..685743TCONS_00051647-exon-scaffold_202-1491911889:685653..685743Clytia hemisphaericaexon
TCONS_00051647-exon-scaffold_202-1491911889:684933..685014TCONS_00051647-exon-scaffold_202-1491911889:684933..685014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:684933..687782 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.63647	5.83352	3.82205	3.21321	10.2534	6.26998	3.51303	5.09128	2.78746	2.46467	2.24236	2.60645	2.40747	2.21696	1.83496	3.01499	2.39996	2.85078	1.29367	1.39938	2.69836	2.29353	4.35472	4.68437	2.48733	4.9128	1.69237	1.91766	4.5769	4.6368
Blast
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BLAST of TCONS_00051647 vs. Swiss-Prot (Human)
Match: SNIP1 (Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-26
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 2 
Query: 1412 SSTNDKKETVSKEEPNYELSGKLTEYTNTYNGVVIKYNEPSEARKPKTKWRLYPFKGDKSLPLLQIHRQSAFLLGRDRKV 1651
               N +KE  +KE+P++ELSG L E TNT+ GVVIKY+EP EAR PK +WRLYPFK D+ LP++ IHRQSA+LLGR R++
Sbjct:  210 GGNNKEKEVPAKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRI 289
The following BLAST results are available for this feature:
BLAST of TCONS_00051647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNIP11.701e-2661.25Smad nuclear-interacting protein 1 OS=Homo sapiens... [more]
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