TCONS_00051650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051650
Unique NameTCONS_00051650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051650 ID=TCONS_00051650|Name=TCONS_00051650|organism=Clytia hemisphaerica|type=transcript|length=962bp
TAGTGGGGCGTCAGGGCGTGATCGTGAATGGGCGGACGGGCGTCCGAGAG
ACATGGTTTCGAGTACGCATGCTCAGATGAGACATGTATGGGTTTAAAAA
TGGTAgcccattttcaaaacaacatctCGGGTCGAGGGCTCTGGACAGCT
CACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACCATGCCA
GAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAATGATCT
TCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATACCAAAA
GAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGCAGAAAG
CTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTTCGACTA
TCAAGGACAAGTTGTGGACATATTTGAGAAAGCCGAAAACTCCCTCCAAA
AGCAAAAATATGACGAAGTGTCAGACCTATTGACCAAAGGTAAGGACATT
TGTTTTGCCAGAATGAAAGTCTTAATGATCGCTGATAGAGACGGGTGGGG
CATAGCCAATGCCTACCAAAGTGATGATCTCGCCTCGGATGAGGATGACG
AAAAGCGAATTCAAAAAGCTTTAAGGGAGGCAGCCCGGAAAAGAAGGCTA
AAGGAGAGCAATTCGGCACACAACTCGAATAGTACCAGTCCAATTTCAGT
AGTCACCATATGGATAGTAGACCaagacaaaaaccaaaaatccCCATTGA
GGAATTAGAATGTTGGAGGTGTGGAAAGAAAGGACATTTTTTTGCCACAT
GCACAAACCCACCTAAACCAACAGAGACATTAGTCGGTAATCCTACTGAA
AATACTTctaattaacattttttttttttcaaaagacgcttgtgttttta
ttttcaaaaataatttttttttcacacctGACACAAGAGCTGTTGGCAGT
CAAATACTCANN
Run BLAST on NCBI

transcript from alignment at scaffold_202:928891..930108-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051650 ID=TCONS_00051650|Name=TCONS_00051650|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at scaffold_202:928891..930108- (Clytia hemisphaerica)
TAGTGGGGCGTCAGGGCGTGATCGTGAATGGGCGGACGGGCGTCCGAGAG
ACATGGTTTCGAGTACGCATGCTCAGATGAGACATGTATGGGTTTAAAAA
TGGTAGCCCATTTTCAAAACAACATCTCGGGTCGAGGGCTCTGGACAGCT
CACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACCATGCCA
GAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAATGATCT
TCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATACCAAAA
GAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGCAGAAAG
CTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTTCGACTA
TCAAGGACAAGTTGTGGACATATTTGAGAAAGCCGAAAACTCCCTCCGAA
AGCAAAAATATGACNAAAGCGCAGAAAGCTTTAGAAAGTAAAACTGACGT
CAAAAGCAAATCAGCAACAGTTTGACTATCAAGGACAAGTTGTGGACATA
TTTGAGAAAGCCGAAAACTCCCTCCAAAAGCAAAAATATGACGAAGTGTC
AGACCTATTGACCAAAGGTAAGGACATTTGTTTTGCCAGAATGAAAGTCT
TAATGATCGCTGATAGAGACGGGTGGGGCATAGCCAATGCCTACCAAAGT
GATGATCTCGCCTCGGATGAGGATGACGAAAAGCGAATTCAAAAAGCTTT
AAGGGAGGCAGCCCGGAAAAGAAGGCTAAAGGAGAGCAATTCGGCACACA
ACTCGAATAGTAGCCAGTCCAATTTCAGTAGTCACAATAAGGATAGTAGA
CCAAGACAAAAACCAAAAATCCCCATTGAGGAATTAGAATGTTGGAGGTG
TGGAAAGAAAGGACATTTTTTTGCACAACTCGAATAGTAGCCAGTCCAAT
TTCAGTAGTCACCATATGGATAGTAGACCAAGACAAAAACCAAAAATCCC
CATTGAGGAATTAGAATGTTGGAGGTGTGGAAAGAAAGGACATTTTTTTG
CCACATGCACAAACCCACCTAAACCAACAGAGACATTAGTCGGTAATCCT
ACTGAAAATACTTCTAATTAACATTTTTTTTTTTTCAAAAGACGCTTGTG
TTTTTATTTTCAAAAATAATTTTTTTTTCACACCTGACACAAGAGCTGTT
GGCAGTCAAATACTCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032693XLOC_032693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051650-exon-scaffold_202-1575043694:929690..930108TCONS_00051650-exon-scaffold_202-1575043694:929690..930108Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1575043694:929297..929561TCONS_00051650-exon-scaffold_202-1575043694:929297..929561Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1575043694:928891..929168TCONS_00051650-exon-scaffold_202-1575043694:928891..929168Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1510915933:929690..930108TCONS_00051650-exon-scaffold_202-1510915933:929690..930108Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1510915933:929297..929561TCONS_00051650-exon-scaffold_202-1510915933:929297..929561Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1510915933:928891..929168TCONS_00051650-exon-scaffold_202-1510915933:928891..929168Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1491911889:929690..930108TCONS_00051650-exon-scaffold_202-1491911889:929690..930108Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1491911889:929297..929561TCONS_00051650-exon-scaffold_202-1491911889:929297..929561Clytia hemisphaericaexon
TCONS_00051650-exon-scaffold_202-1491911889:928891..929168TCONS_00051650-exon-scaffold_202-1491911889:928891..929168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:928891..930108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.8898	47.4819	21.7419	14.6587	46.5206	35.5099	70.7895	74.681	146.095	80.8299	77.2403	126.322	96.3035	119.415	98.566	76.4439	129.682	132.015	79.7802	58.4369	128.069	141.158	66.7897	76.7437	70.9169	52.6738	73.4568	68.1183	46.0138	41.0334
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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