TCONS_00051655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051655
Unique NameTCONS_00051655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051655 ID=TCONS_00051655|Name=TCONS_00051655|organism=Clytia hemisphaerica|type=transcript|length=535bp
CCTTTATAATAAACCAGAAAACAAGCCCTGGAAAACAATGCAATAAATAC
CTTGGAAGTTACAAGGTTTCCAGCATGTTTACAACACAATCTGAACCAAG
AGTTACCAGAGATTGTCCATCATTCGAAAGTGCGATTCCTTCAATAGATC
CAGCATGCAATTTCTCACAGTAAATCAATTCAANCCAGAGATTGTCCATC
CTTCGAAAGTGCGATTCCTTCAATAGATCCAGCATGCAATTTCTCACAGT
AAATCAATTCAAAAGAATTCAAGTCCCATGACAATAAGTAACCATTTTGC
GTAGTTACAAATAATCgatcatttttttcattgatttccaTATAAGTTAG
GGTATACCAACCATATACAAGTTCTGTTTTAAGAACAGTGATGAGTTCAA
ATGTCAATCCATCGTACACGCGGACCGTTCGGTCGTCAGCACATGTTGCA
AGAACGTGTTTTCCAGACGCTAAAAGTTTCCAACTGAGGTCAGTTACGGC
TGTGGTGTGACCAGtcaatgtttttaaaacttcAC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1050623..1051227-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051655 ID=TCONS_00051655|Name=TCONS_00051655|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at scaffold_202:1050623..1051227- (Clytia hemisphaerica)
CCTTTATAATAAACCAGAAAACAAGCCCTGGAAAACAATGCAATAAATAC
CTTGGAAGTTACAAGGTTTCCAGCATGTTTACAACACAATCTGAACCAAG
AGTTACCAGAGATTGTCCATCATTCGAAAGTGCGATTCCTTCAATAGATC
CAGCATGCAATTTCTCACAGTAAATCAATTCAANCCAGAGATTGTCCATC
CTTCGAAAGTGCGATTCCTTCAATAGATCCAGCATGCAATTTCTCACAGT
AAATCAATTCAAAAGAATTCAAGTCCCATGACAATAAGTAACCATTTTGC
GTAGTTACAAATAATCGATCATTTTTTTCATTGATTTCCATATAAGTTAG
GGTATACCAACCATATACAAGTTCTGTTTTAAGAACAGTGATGAGTTCAA
ATGTCAATCCATCGTACACGCGGACCGTTCGGTCGTCAGCACATGTTGCA
AGAACGTGTTTTCCAGACGCTAAAAGTTTCCAACTNTACGCGGACTGTTC
GGTCGTCAGCACATGTTGCAAGAACGTGTTTTCCAGAGGCTAAAAGTTTC
CAACTGAGGTCAGTTACGGCTGTGGTGTGACCAGTCAATGTTTTTAAAAC
TTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032697XLOC_032697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051655-exon-scaffold_202-1575043694:1050760..1051227TCONS_00051655-exon-scaffold_202-1575043694:1050760..1051227Clytia hemisphaericaexon
TCONS_00051655-exon-scaffold_202-1575043694:1050623..1050689TCONS_00051655-exon-scaffold_202-1575043694:1050623..1050689Clytia hemisphaericaexon
TCONS_00051655-exon-scaffold_202-1510915933:1050760..1051227TCONS_00051655-exon-scaffold_202-1510915933:1050760..1051227Clytia hemisphaericaexon
TCONS_00051655-exon-scaffold_202-1510915933:1050623..1050689TCONS_00051655-exon-scaffold_202-1510915933:1050623..1050689Clytia hemisphaericaexon
TCONS_00051655-exon-scaffold_202-1491911889:1050760..1051227TCONS_00051655-exon-scaffold_202-1491911889:1050760..1051227Clytia hemisphaericaexon
TCONS_00051655-exon-scaffold_202-1491911889:1050623..1050689TCONS_00051655-exon-scaffold_202-1491911889:1050623..1050689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1050623..1051227 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83537	2.0371	0.68385	2.38977	0.701455	0.756798	0.586507	1.80956	1.31274	1.65264	0.722674	0.579306	2.14713	2.39818	1.52059	0.689021	0	1.31509	0.776991	0.829291	0.615963	0.792436	2.84814	1.69174	2.16931	4.15583	0.679537	0.371228	1.50874	2.99208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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