TCONS_00051666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051666
Unique NameTCONS_00051666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051666 ID=TCONS_00051666|Name=TCONS_00051666|organism=Clytia hemisphaerica|type=transcript|length=2131bp
TATGTTTCGTAAAGGCTGTACCAACACATACTTGAGGCCAGTTTCTTATA
TTTTCCTTTTCGTATCTCTGGCTATCACAATGGTTTCGTTTTGTACAAGT
AGCTGGTATAGTAAGATCAATGAGAAAGgaatcaaagttttcaaaggGAT
TTGGAATGTTTGTGAAGGCAAACAAGACTGGCCAGCATACTGTCATTTCT
TACCTGAACCACCGACGCCTGACAATCCGCATGACGATCCCTTCTTTGAT
ATATCATCAGAGGAGCTGACAGGCGTGAGGGTGTTGATCTCAATGGCAAT
CTTATTTATGGTGGGCGCACTTGGTTATCCGCCCTTCTTCAAGCAAATGT
CAACAGGAATTCTGAAGATTGGTTTGATGTCAGTTCTTTCAGGAATTGCA
GgttCTTGTTTGTTCACAGCCATGTTGATTATGACTCACCAAATGAACAG
TATGGATCCAATCCCAAACTTTGGATATTCTTACATCATGGGATGGGTAT
CAACAGGAATGTGTTTCGTAACTGCTTGTTTGATTTATATCGCTTCCAAA
GATAATGTTTACGTGGAAGGACTGTATTAAGTGAAgtttgaaaaccttta
acaatcAATACGAAGCTGTCCTTTAGGGGTGGTTCCATCATAGAGTTTAC
ATCACGAGTATTACGAACCGAGACGTTTTTTGGACTACAAATCATAAGCT
ATTCCAGAAGACAAAAGCTAACATTGTAGGCATCGGTGCCTGATACAATG
AGTGAAAATAGAAAGTGGTTGAAACTTCCAATAATGTTAATGTTGAACTC
CATTGACTGGGAATGTTAAGAGAAACCatcttttcaaaaacaatattaTG
TCGAGAAAAAGTGTTGCGATGGGAGAATCGGGTGTCATAATGCAGAATGA
TCAAAATGCCTCTTCAAATAGTATTCAGTATGTTAGAGGGACTGTATGTT
TTGAACATTAAGATGAGGTTGATCAGCTGCCCGAAGAACGAATATCGAAA
AATGAATTTGGAATGGAGCTACAATCCAGAGAAAGATATACACAATTCTC
CGGATCCGTGGATCCGTAGTAACGAACACTATATACAAACAACTTACTTA
TTAATGAGAGATGAATTACTTCCATACGATCAACTAATGTTTTAGATATA
ACAACATTCGGATTGAATGGATACGTTGtaaaaaaaattgccaaaaactg
ATCATAAGTACTTCgatgggataaatttttgcagggattaaatttcgcgg
atttcggaTTTTGGTGTTATCCTTAAAAATAAGTCCAGAAAGAATTGTAA
AGGGCTTCATCTGCGAAAATAAGTCCCCGCAAAATGTTCAAATTTCACGG
ATAGGTAATCTACAAATGATATTTACAACGAATAAGGAGATCGCGTCGAC
CAGTTCATAGAAAACATTACCTCTGTACCTTTGATTTGAAAACTGTGTTG
TTTTTCTGATTTCgtagaaaagttaaaatgtaaaatctacAAACCTGTCG
GTACTATAGTCTGACAACTGGTTTCAAATTAGAAAGATTCTCTAAAGATA
ATAGTTTCTCGTGAGCTTTTAACGAGTCAATGATTTCATGTAAATTTGAT
CCACCATTTAATAAGTCCTCTACTCCGTGCAATGTTAGACCGATACGATG
ATCAGTGATTCGGTCTTGTGGATAATTATAAGTTCGTATACGTTCTGATC
TTAGGGCGGACCCAATTTGGATACGCCGTGCGTCACTACGTTCTTTCATT
GCACGTGTCCGCTCCTCGTCGTAAAGTTTGGCGCTCAGCACTTGTAATGC
CTTCTGCCGATTCATAATTTGTGATCTGCCATCTTGCATTGAAACTGTCA
TTCCTGTTGGTAAATGCGTCACCCGTACCGCACTATCGGTCGTATTGACA
TGTTGACCGCCGGCACCAGACGATTTAAAGGTATCTATTTTNGGTCGTAT
TGACGTGTTGACCGCCGGCACCAGACGATTTAAAGGTATCTATTTTGACG
TCTTTCATGTCGAGAACGAAGCCAACGTTTTCAGGTTGCGGAAGTACGGC
AACGGAAATAGTTGACGTGTGTACGCGGCCTTGTGATTCAGTAACGGGGA
TACGTTGAACTCGATGGACACCTATTTCATG
Run BLAST on NCBI

transcript from alignment at scaffold_202:1217314..1221911-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051666 ID=TCONS_00051666|Name=TCONS_00051666|organism=Clytia hemisphaerica|type=transcript|length=4598bp|location=Sequence derived from alignment at scaffold_202:1217314..1221911- (Clytia hemisphaerica)
TATGTTTCGTAAAGGCTGTACCAACACATACTTGAGGCCAGTTTCTTATA
TTTTCCTTTTCGTATCTCTGGCTATCACAATGGTTTCGTTTTGTACAAGT
AGCTGGTATAGTAAGATCAATGAGAAAGGAATCAAAGTTTTCAAAGGGAT
TTGGAATGTTTGTGAAGGCAAACAAGACTGGCCAGCATACTGTCATTTCT
TACCTGAACCACCGACGCCTGACAATCCGCATGACGATCCCTTCTTTGAT
ATATCATCAGGTAAGTTACGATCAAACCCTCGTCCCGCCGTGTATCCTAA
GGCATTTTTACAAACATCCCCTTTTCACAGACCCGGTGAGATTTCTTCAG
CTAGTGGGGGTAAAAAAAGCGGAGCAAAACTCAATGGGGGGATTGATATT
CCCATTTTGCTTATGACTGGGAATTTGAATTCCATTGTTTTTGAGCAAGA
AAATTCAGTGGCAATGGAATAAAATAGCACAATAATTTGCAGCGGGGACA
AAAATTAGAGTAAAATATTCCACCGGGGAGGATATCGGACGAGCCAATGG
AGTTATGAGAAGGGGGTGTTTTTAACGTTTCCTGTAGAGACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGCTTAGAATTTCTTTTGATACATTTTATA
AAAGAAATCAAAAGACTTTAACGACCAATTACCGACACATTCAACTCCTG
TTTTTCTTTATACCTCTATGAGAGACCAAAGAATATGATTTCGCACTATT
TTCGTAAGCAGGCAAAGCCCTTGTATCGGTGCAGGGAACGGGTTTAATTG
CAGCCTAAATTGCTTTCACTTTGAATTATGGCATGGAATCTCTATCATTT
TCAATGTTATTGATAGTATTGAAAGTCTAAACAAAACATCTAAATTAAAA
AAGTTTATACCACACATTGGCTGACTAAAATATTTAAGAAATTTAAGCAA
ATCATAAAAAAGTAGAAATACCCAAGAACTTAGCTGGTACTAAATGCCTA
AGCAAGGTTTATTCATCGTCCAAAGCATCCGAATAACATATAAAACGCTC
AAACAAGTACTCTTTCCAGTTATCTTGAATATCCTTGACTTTTTCTCTAT
TTTAGAGGAGCTGACAGGCGTGAGGGTGTTGATCTCAATGGCAATCTTAT
TTATGGTGGGCGCACTTGGTTATCCGCCCTTCTTCAAGCAAATGTCAACA
GGAATTCTGAAGATTGGTTTGATGTCAGTTCTTTCAGGAATTGCAGGTTA
ATATAATGTTTTTAATTCTGAAGTGATTGGGAAAGTACCATAAAAGTGGA
TTAATTTTGGCGGGGGATTAATTTGTCGATAGATCAATTTCATAAAATTT
GGCGTGGATTGTGGATTTAGTTTGGCGAATTGCAAATTTTGANATTTAAT
TTGGCGATTGGCCAAAATACGAATTTTGGCGGGGGATTAATTTGTCGATA
GATCAATTTCATAAAATTTGGCGTGGATTGTGGATTTAGTTTGGCGAATT
GCAAATTTTGAGACGTTAAAATGGATGAAAATTACTATACAATATACTGT
AAAGTTATTGTTTTTGCATAATATTCTTTTTGTTAAATTTGGTGAATGGT
GGGTCAAATTAAATCCCCGCCAAAAATTAACCCACTTAAGGTGACGAGAG
AAAGAGAAACTAGTATCATGTCCCTGTCCCTCGTGTGTTTTTTTATGATC
CTGATAGTGCCCGTGAAAGAAAGCACGATGGTTCCACGTCAATCTAAGAG
AAGTGTGTTTGGCTCTGGCGTACGAGATAGGAGGAATATACTAGGGAAAA
ATGTTTTTGGCACAATTTTAGAGATTTAATGTTAGGACAAAATCAAAACC
TAAAACATGTTGACCTATTGATTTCGGGATAAAATTATTATATAAAATAA
TTCAGCCCTGACTCAATGTAACCAAAAAGGGATCATTAGCTCCTCAAAGA
ATTTGTGTTATTCACAAAGTAGTGTTTTATTTGGAAACATACCGGGCGTT
TCTCACTAATTTTCAATTTAAACAAATAAAATTAGTGAGAAACATCCGGA
CTATTTTCAGTGCCTCCGTATAAAACATTACGTTATAAATATCATGAACT
GTCCCTTCAAAAGACACAAAAACATCTTAAAACGCAAACCTCACTATAAA
ACTACTTTTTTTTTATTTCAGGTTCTTGTTTGTTCACAGCCATGTTGATT
ATGACTCACCAAATGAACAGTATGGATCCAATCCCAAACTTTGGATATTC
TTACATCATGGGATGGGTATCAACAGGAATGTGTTTCGTAACTGCTTGTT
TGATTTATATCGCTTCCAAAGATAATGTTTACGTGGAAGGACTGTATTAA
GTGAAGTTTGAAAACCTTTAACAATCAATACGAAGCTGTCCTTTAGGGGT
GGTTCCATCATAGAGTTTACATCACGAGTATTACGAATCGAGACTCATGG
ACTACAAACTATCAACTCTTCCAGAAGACAAAAGCTAACATTGTAGGCAT
CGGTGCCTGATACAATANGGGGGCGCTTCCATCATAGAGTTTACATCACG
AGTATTACGAACCGAGACGTTTTTTGGACTACAAATCATAAGCTATTCCA
GAAGACAAAAGCTAACATTGTAGGCATCGGTGCCTGATACAATGAGTGAA
AATAGAAAGTGGTTGAAACTTCCAATAATGTTAATGTTGAACTCCATTGA
CTGGGAATGTTAAGAGAAACCATCTTTTCAAAAACAATATTATGTCGAGA
AAAAGTGTTGCGATGGGAGAATCGGGTGTCATAATGCAGAATGATCAAAA
TGCCTCTTCAAATAGTATTCAGTATGTTAGAGGGACTGTATGTTTTGAAC
ATTAAGATGAGGTTGATCAGCTGCCCGAAGAACGAATATCGAAAAATGAA
TTTGGAATGGAGCTACAATCCAGAGAAAGATATACACAATTCTCCGGATC
CGTGGATCCGTAGTAACGAACACTATATACAAACAACTTACTTATTAATG
AGAGATGAATTACTTCCATACGATCAACTAATGTTTTAGATATAACAACA
TTCGGATTGAATGGATACGTTGTAAAAAAAATTGCCAAAAACTGATCATA
AGTACTTCGATGGGATAAATTTTTGCAGGGATTAAATTTCGCGGATTTCG
GATTTTGGTGTTATCCTTAAAAATAAGTCCAGAAAGAATTGTAAAGGGCT
TCATCTGCGAAAATAAGTCCCCGCAAAATGTTCAAATTTCACGGATAGGT
AATCTACAAATGATATTTACAACGAATAAGGAGATCGCGTCGACCAGTTC
ATAGAAAACATTACCTCTGTACCTTTGATTTGAAAACTGTGTTGTTTTTC
TGATTTCGTAGAAAAGTTAAAATGTAAAATCTACAAACCTGTCGGTACTA
TAGTCTGACAACTGGTTTCAAATTAGAAAGATTCTCTAAAGATAATAGTT
TCTCGTGAGCTTTTAACGAGTCAATGATTTCATGTAAATTTGATCCACCA
TTTAATAAGTCCTCTACTCCGTGCAATGTTAGACCGATACGATGATCAGT
GATTCGGTCTTGTGGATAATTATAAGTTCGTATACGTTCTGATCTTAGGG
CGGACCCAATTTGGATACGCCGTGCGTCACTACGTTCTTTCATTGCACGT
GTCCGCTCCTCGTCGTAAAGTTTGGCGCTCAGCACTTGTAATGCCTTCTG
CCGATTATCGTATAATATCAAAGCGCTTAGACTCACTGATTGCCAGACTA
CGCTATAATAACTTGGACCTATTTATATTAGTAGTCTCATGGTCTCAAAG
TCTTACATCAGAATCATCGATCTAAATTATGAGCTACCCCCGAGACAAAC
TTTCGCGATTTTCATAAATTCTGGCCATCTTCGCGAAATTAGAATACTGA
TAACGGTTCAGGTCGTTTAGTTATCTTACCATAATTTGTGATCTGCCATC
TTGCATTGAAACTGTCATTCCTGTTGGTAAATGCGTCACCCGTACCGCAC
TATCGGTCGTATTGACATGTTGACCGCCGGCACCAGACGATTTAAAGGTA
TCTATTTTNGGTCGTATTGACGTGTTGACCGCCGGCACCAGACGATTTAA
AGGTATCTATTTTGACGTCTTTCATGTCGAGAACGAAGCCAACGTTTTCA
GGTTGCGGAAGTACGGCAACGGAAATAGTTGACGTGTGTACGCGGCCTTG
TGATTCAGTAACGGGGATACGTTGAACTCGATGGACACCTATTTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032702XLOC_032702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051666-exon-scaffold_202-1575043694:1221652..1221911TCONS_00051666-exon-scaffold_202-1575043694:1221652..1221911Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1575043694:1220316..1220456TCONS_00051666-exon-scaffold_202-1575043694:1220316..1220456Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1575043694:1219142..1219390TCONS_00051666-exon-scaffold_202-1575043694:1219142..1219390Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1575043694:1217856..1219017TCONS_00051666-exon-scaffold_202-1575043694:1217856..1219017Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1575043694:1217314..1217632TCONS_00051666-exon-scaffold_202-1575043694:1217314..1217632Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1510915933:1221652..1221911TCONS_00051666-exon-scaffold_202-1510915933:1221652..1221911Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1510915933:1220316..1220456TCONS_00051666-exon-scaffold_202-1510915933:1220316..1220456Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1510915933:1219142..1219390TCONS_00051666-exon-scaffold_202-1510915933:1219142..1219390Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1510915933:1217856..1219017TCONS_00051666-exon-scaffold_202-1510915933:1217856..1219017Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1510915933:1217314..1217632TCONS_00051666-exon-scaffold_202-1510915933:1217314..1217632Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1491911889:1221652..1221911TCONS_00051666-exon-scaffold_202-1491911889:1221652..1221911Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1491911889:1220316..1220456TCONS_00051666-exon-scaffold_202-1491911889:1220316..1220456Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1491911889:1219142..1219390TCONS_00051666-exon-scaffold_202-1491911889:1219142..1219390Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1491911889:1217856..1219017TCONS_00051666-exon-scaffold_202-1491911889:1217856..1219017Clytia hemisphaericaexon
TCONS_00051666-exon-scaffold_202-1491911889:1217314..1217632TCONS_00051666-exon-scaffold_202-1491911889:1217314..1217632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1217314..1221911 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06589	0.478645	0.488664	0.290696	0.338669	0.127578	0.442067	0.306158	0.341548	0.524488	0	0.236743	0.31294	0	0.0360549	7.38793e-06	2.33109e-05	1.20057	1.79707	0.333762	0.318354	1.3346	0	0.846304	0	0	0.342741	0.928467	0.898662	0.858921
Blast
[Close]
BLAST of TCONS_00051666 vs. Swiss-Prot (Human)
Match: RF1ML (Peptide chain release factor 1-like, mitochondrial OS=Homo sapiens GN=MTRF1L PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.364e-38
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = -2 
Query: 1561 VNTSIRPK---IDTFKSSGAGGQHVNTTDSAVRVTHLPTGMTVSMQDGRSQIMNRQKALQVLSAKLYDEERTRAMKERSDARRIQIGSALRSERIRTYNYPQDRITDHRIGLTLHGVEDLLNGGSNLHEIIDSLKAH 1962
            +N  I PK   IDT ++SGAGGQHVNTTDSAVR+ HLPTG+    Q  RSQ+ N++ A+  L AKLY       + +R +AR+IQIGS  RSE+IRTYN+PQ+R+TDHRI  TLH +E  + G   L E++ SLK +
Sbjct:  230 INLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEY 366

HSP 2 Score: 93.5893 bits (231), Expect = 2.263e-20
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = -1 
Query: 1943 EIGVHRVQRIPVTESQGRVHTSTISVAVLPQPENVGFVLDMKDVKIDTFKSSGAGGQHVNTT 2128
            E GVHRVQR+P TE QGRVHTST++VA+LPQP  +  V++ KD++IDT ++SGAGGQHVNTT
Sbjct:  196 EGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTT 257
The following BLAST results are available for this feature:
BLAST of TCONS_00051666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RF1ML4.364e-3853.28Peptide chain release factor 1-like, mitochondrial... [more]
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