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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051671 ID=TCONS_00051671|Name=TCONS_00051671|organism=Clytia hemisphaerica|type=transcript|length=809bp
AGCCTATtgaatagtagaatgtcgaattagagagcgccagctgtactgtt
cttttttttataaaaaggtaATTTCATACAGATATTCAACAAACAACGCA
TTCATAGGAAGCAATTGACCTCATACACGCAAGATGGCGTTtaccaaatt
caaaaagttcatcaGAAGTTTACGCTACTATCCAGAACTGCTTTTCGTTT
TTCATCTGTATGGTGTCCTATTCTCTGGACCAACGTTGGAGCAATATTTA
TATAAAGTGTTCAGTGACGAAGTTGGATATAATTATACGTATAATTCAAA
TACTGCTAATAGTGATTGCAATAAAGGTGATTTGAACTCGACCAGCCATA
CACTTTTGAAGGAGGTTCAAGACCGAATATCCAAGTTCCAACTTTATTTA
ATGTTAGCGCAAAACATTCCACCTATTTTGTTAGTTCTTTTCTTCGGCCC
ATTAGCCGATCGGTATGGTCGTAAAGTTGTCATGATGATCGCCTTTATCG
GTTACGCATTTTGGTCGACGATCCTCACTGCCGTTGTTTATTTCAATTTG
AGCAGATATTTAATTCTTGTTGCTAATTTCATTTGGGGATGTTGTGGATA
TTATTTATCAGCTGTTGTTGCGTTATTGGCTTATGTTTCTGACCGAACGC
AACCGGATAATAGAGCTTTTAGAATAGcTATTGTGGATCTTGTTTTATTC
GCTGCCATAACAGCGAGCAACTTCTCAAACGGCAAATATCTTCAAGAATT
TGGATTCCTTGCTTGTTTTCTTCTGATGTTTACCATCTCAATCGTATCCG
TGATCTGGT Run BLAST on NCBI transcript from alignment at scaffold_202:1230086..1232078- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051671 ID=TCONS_00051671|Name=TCONS_00051671|organism=Clytia hemisphaerica|type=transcript|length=1993bp|location=Sequence derived from alignment at scaffold_202:1230086..1232078- (Clytia hemisphaerica)
AGCCTATTGAATAGTAGAATGTCGAATTAGAGAGCGCCAGCTGTACTGTT
CTTTTTTTTATAAAAAGGTAATTTCATACAGATATTCAACAAACAACGCA
TTCATAGGAAGCAATTGACCTCATACACGCAAGATGGCGTTTACCAAATT
CAAAAAGTTCATCAGAAGTTTACGCTACTATCCAGAACTGCTTTTCGTTT
TTCATCTGTATGGTGTCCTATTCTCTGGACCAACGTTGGAGCAATATTTA
TATAAAGTGTTCAGTGACGAAGTTGGATATAATTATACGTATAATTCAAA
TACTGCTAATAGTGATTGCAATAAAGGTGATTTGAACTCGACCAGCCATA
CACTTTTGAAGGAGGTAAGAGATTCTATACTTACTAACTGGCACAAGACG
TCAACGTTTCAAAATCTGGTAATTAGCATATGGCTTAGGCCATTCTAATT
GATTTTTAAACCATGTCAGATAAATAAAATCGGAAATTTTTTCAAGGATT
AATTTATTTTGGAACTCTGTTAGGTCAGCAGACTTTGAAAAAGTTGCAAG
GCTGTGAACCCAAGAACCCAGCACCCTAAAGATACACTAAATATCAACTT
GAATCTTTTTCTAGCTTGGTAAGAAATATATCCCATCTTGTTTAGTTGAA
CATTAGAAACACAATTGGGCTTTTCCAGAAAAAAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAATGGGGGG
GGGGGTGGAGGATATAACAATTTTCAGTGATTTACCCCGGACAAAGTGAC
TTTTGGCCCCCGGACAAGCATCAGTTGACCCCCCGAACAACCCAAATTAC
CCCCGGAAAATATATCCTCCACCCCCCATATACGGACATTTTCTGGAAGA
GCCCATTATGAATACGACTTTTCAACGTTTGTCTTTGACAAGTTCCATTT
TCTTTATTTATAGGTTCAAGACCGAATATCCAAGTTCCAACTTTATTTAA
TGTTAGCGCAAAACATTCCACCTATTTTGTTAGTTCTTTTCTTCGGCCCA
TTAGCCGATCGGTATGGTCGTAAAGTTGTCATGATGATCGCCTTTATCGG
TTACGCATTTTGGTCGACGATCCTCACTGCCGTTGTTTATTTCAATTTGA
GCAGATATTTAATTCTTGTTGCTAATTTCATTTGGGGATGTTGTGGATAT
TATTTATCAGCTGTTGTTGCGTTATTGGCTTATGTTTCTGACCGAACGCA
ACCGGATAATAGAGCTTTTAGAATAGGTAAGTTTGTTTTGTCTTTTTTAT
TTCTAGAACACCTCTGTGTCACAGACCCGCTGGGACCCTAGCCCCACTGG
AAAATTTGGCAAAAATTTCGTTCCCTGTGGAAAAATAACCTGGAATTTCA
GCCCCACTGGGAATTTGAGTTTGATTTTAACCCCATTCGATATCCAATGT
TTAAAAATTGCACTCCAAAACCATCCCCACTGGATTTTTTAACCTTGGAA
CAATAAAATTTCTATCCCCATTGAGATTTCAATAGGAATTTTTTTCCCCA
CTGAGGAAAAAAGTTCCACCGGGTCTGCGAGACAGAAGTGTTTCTAGTTC
TGGAGTTCTGGAGAACGTGTATTGGCAATTTTCATTCGTATAAGCTACTC
TGTGCTTCCAAAAGGTTTTTGCTCTTCAAACCTTCAGATTAAGAAGGTAT
AGGATGTCCATTTTTCATGTTTATTCGAGCGATATCGATATATTAGTAGT
CAATTATCTGTTCAGTGAAGCTTCGATTGTCTAAAAGATTGAATTTGTTT
TATATTTTCAGCTATTGTGGATCTTGTTTTATTCGCTGCCATAACAGCGA
GCAACTTCTCAAACGGCAAATATCTTCAAGAATTTGGATTCCTTGCTTGT
TTTCTTCTGATGTTTACCATCTCAATCGTATCCGTGATCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051671-exon-scaffold_202-1575043694:1231715..1232078 | TCONS_00051671-exon-scaffold_202-1575043694:1231715..1232078 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1575043694:1230753..1231065 | TCONS_00051671-exon-scaffold_202-1575043694:1230753..1231065 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1575043694:1230086..1230217 | TCONS_00051671-exon-scaffold_202-1575043694:1230086..1230217 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1510915933:1231715..1232078 | TCONS_00051671-exon-scaffold_202-1510915933:1231715..1232078 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1510915933:1230753..1231065 | TCONS_00051671-exon-scaffold_202-1510915933:1230753..1231065 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1510915933:1230086..1230217 | TCONS_00051671-exon-scaffold_202-1510915933:1230086..1230217 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1491911889:1231715..1232078 | TCONS_00051671-exon-scaffold_202-1491911889:1231715..1232078 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1491911889:1230753..1231065 | TCONS_00051671-exon-scaffold_202-1491911889:1230753..1231065 | Clytia hemisphaerica | exon |
| TCONS_00051671-exon-scaffold_202-1491911889:1230086..1230217 | TCONS_00051671-exon-scaffold_202-1491911889:1230086..1230217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1230086..1232078 - |
Blast
BLAST of TCONS_00051671 vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.031e-17 Identity = 52/191 (27.23%), Postives = 97/191 (50.79%), Query Frame = 2
Query: 209 YGVLFSGPTLEQYLYKVFSDEVGXXXXXXXXXXXXDCNKGDLNSTSHTLLKEVQDRISKFQLYLMLAQNIPPILLVLFFGPLADRYGRKVVMMIAFIGYAFWSTILTAVVYFNLSRYLILVANFIWGCCGYYLSAVVALLAYVSDRTQP-DNRAFRIAIVDLVLFAAITASNFSNGKYLQEFGFLACFLLM 778
+ + +GP QY+Y+ +E G + + + +C K + +S +EVQ ++S+F L + ++ IP ++ ++D YGRK M+++ +G S L + YF L++ + FI CG Y + A AY+ D+ + + RIAI+D +L + S+G +++E GF FL++
Sbjct: 15 FAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNIS-ECEK-NKSSPIFAFQEEVQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLII 203
The following BLAST results are available for this feature:
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