TCONS_00051692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051692
Unique NameTCONS_00051692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051692 ID=TCONS_00051692|Name=TCONS_00051692|organism=Clytia hemisphaerica|type=transcript|length=378bp
ATTAATAAATAGATACTGTATGTACTTCAAACATCAACTTGATAAATTCC
TGTGTACTGTGTCTGATGAACCTCTCGTTTCAGGTTACACTGGCTTGATT
TGAGCTGAATCAAACACAGTGGCAGTCAAGGCACCCTTACAACAACACTG
GTGTGGTCTCAACGAGATGGGTGGTCTCAATATTGAGACAAATCAATTTC
AAGTAATCTTCAAGTAAGTAAGTATGGCATCAAAACTTGATGAAGTaaag
aaatcaaattaaaaactcGAGGGAGGTattaaaatctcagacatacaCAT
GGGTACCAAAAGTGATTCTTTTGCGTACCACTATCCTAATGTAGAGAATT
AGTATTTTAATACATTTTGACATTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_202:236727..237104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051692 ID=TCONS_00051692|Name=TCONS_00051692|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_202:236727..237104 (Clytia hemisphaerica)
TTTTAATGTCAAAATGTATTAAAATACTAATTCTCTACATTAGGATAGTG
GTACGCAAAAGAATCACTTTTGGTACCCATGtgtatgtctgagattttaa
tACCTCCCTCgagtttttaatttgatttctttACTTCATCAAGTTTTGAT
GCCATACTTACTTACTTGAAGATTACTTGAAATTGATTTGTCTCAATATT
GAGACCACCCATCTCGTTGAGACCACACCAGTGTTGTTGTAAGGGTGCCT
TGACTGCCACTGTGTTTGATTCAGCTCAAATCAAGCCAGTGTAACCTGAA
ACGAGAGGTTCATCAGACACAGTACACAGGAATTTATCAAGTTGATGTTT
GAAGTACATACAGTATCTATTTATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032723XLOC_032723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051692-exon-scaffold_202-1491911889:236727..237104TCONS_00051692-exon-scaffold_202-1491911889:236727..237104Clytia hemisphaericaexon
TCONS_00051692-exon-scaffold_202-1510915933:236727..237104TCONS_00051692-exon-scaffold_202-1510915933:236727..237104Clytia hemisphaericaexon
TCONS_00051692-exon-scaffold_202-1575043694:236727..237104TCONS_00051692-exon-scaffold_202-1575043694:236727..237104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:236727..237104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.209927	0.409425	0	0.232543	2.83099	2.46079	1.88926	1.51603	1.41521	1.53385	1.70148	0.978674	0.837697	0.434978	0.95363	0.511696	0.945551	1.45374	0	1.86815	2.0297	2.07903	0	0.43766	0.901559	3.62079	1.72711	0.921611	1.39802	0.71218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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