TCONS_00051704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051704
Unique NameTCONS_00051704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051704 ID=TCONS_00051704|Name=TCONS_00051704|organism=Clytia hemisphaerica|type=transcript|length=517bp
AGTGGCTATTcatcttaaattttgatgaaaagcttCACACAAATAAACTA
ACTTTTATGAACATCTTACAGAGCCAAGTACTTTGTTAGCCGGAAATGAT
TGAATTCAAATCAATAAAAGTCagatattatcaaaatttatttattaaaa
aaaaattactataaTCATAAAATTTATTATAGCATCTACATCTACACTAG
ACTGTTTCatgcaaaatttaaatttccaataaaaaaaaaggattCATGAA
ACTTAGAAATTCTCGAAATTTCACAAATTAATAGTTTGACCTTGTGAAAC
TTATTTCAAAACAGTTTTCCGAAAACTCTTTATTCGCAGATGAAATCACA
GCAAATGTTCTGATTAAAAATGTGATCTTGTATGCCTGCATCAGGTTTCG
TGCAGCGAAGTGATATTCCAACAGTCCTGCAATAAATCAGGTACACACAG
CTGGTTGACGTGAATTTACATTTTGGTTTAAGTTGACATCTTCTGGAATG
TGGTGAGTGGGTTTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_202:546739..547255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051704 ID=TCONS_00051704|Name=TCONS_00051704|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at scaffold_202:546739..547255 (Clytia hemisphaerica)
CTCAAACCCACTCACCACATTCCAGAAGATGTCAACTTAAACCAAAATGT
AAATTCACGTCAACCAGCTGTGTGTACCTGATTTATTGCAGGACTGTTGG
AATATCACTTCGCTGCACGAAACCTGATGCAGGCATACAAGATCACATTT
TTAATCAGAACATTTGCTGTGATTTCATCTGCGAATAAAGAGTTTTCGGA
AAACTGTTTTGAAATAAGTTTCACAAGGTCAAACTATTAATTTGTGAAAT
TTCGAGAATTTCTAAGTTTCATGaatcctttttttttattggaaatttaa
attttgcatGAAACAGTCTAGTGTAGATGTAGATGCTATAATAAATTTTA
TGAttatagtaatttttttttaataaataaattttgataatatctGACTT
TTATTGATTTGAATTCAATCATTTCCGGCTAACAAAGTACTTGGCTCTGT
AAGATGTTCATAAAAGTTAGTTTATTTGTGTGaagcttttcatcaaaatt
taagatgAATAGCCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032735XLOC_032735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051704-exon-scaffold_202-1491911889:546739..547255TCONS_00051704-exon-scaffold_202-1491911889:546739..547255Clytia hemisphaericaexon
TCONS_00051704-exon-scaffold_202-1510915933:546739..547255TCONS_00051704-exon-scaffold_202-1510915933:546739..547255Clytia hemisphaericaexon
TCONS_00051704-exon-scaffold_202-1575043694:546739..547255TCONS_00051704-exon-scaffold_202-1575043694:546739..547255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:546739..547255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115187	0	0	0	0	0	0.148092	0.415925	1.06773	4.32836	12.837	2.76171	0.612861	0.556904	24.1353	26.3922	19.9748	33.5907	0	0.384395	1.1137	0.651867	0.132072	0.240145	0	0.441496	1.4215	1.51707	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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