TCONS_00051732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051732
Unique NameTCONS_00051732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051732 ID=TCONS_00051732|Name=TCONS_00051732|organism=Clytia hemisphaerica|type=transcript|length=2428bp
TTTTCTTTTTTGATTTTTGACATATTTTGTGTTTTTCATTGGCTCTGCCA
CGGGTCAACATAAAAAATAATTTACAAATTTTAGAAATTCCCTCTAAGTA
TTTTTCACTCTCAACGCTCAATTCAAATCTCACTAAAATCAAAAAAAAAA
AAGTTAAAATAACCAACAACTTCTATCTCACAATATAGTAATGACAATTT
TGTACAAAAAATAGTTTACGAGCTACCTTTATTTTCGAAAAATCAATAAG
ACGTAGAGTTCCGCCGATACTTAACCCTAATTAAGgAAGCTTGTAAAATA
TTTAACTTTGAAAAGCCCTTGGTAGGTATTATCTGCAACTCGTTTGAGTT
GACGTGGTATATGAAGTAgaactaaaaaataatttcttttgaaaaataaa
ataatttaaaaatgttattgttATAAAATCAAAGGTAGTGACTGTGTGTA
AATTTATTATAAGAAAAGGGGGCAAGATATTTCAAAGCGTCAATTTTGGC
ATCTATCCAAGTATATGGTTACTTGAGATAGCACCGAGTGTTTTGATTGA
AGTCAAGttgtcttttttatataaaCAGACATAAAATACGTCTGTATGTA
ATTTCTTTTACGTCATTTTACCTTTTTGAGAACACATGACATGCACAGCT
CACAGCAAGCATGTTGACAAAGGTAAAAGAATTAAGAGATCCACTTTCTT
ATATCGCACACGAAATGAAAAATCCAAAACAATATACACAATTTTTAACT
CATAGGTTCATAGAGGGtgtgaaaaagttttgaaagtaaaaattaATTTG
ACAGCCACGGTATAATTATCGAAAATATTGCTAATAAATCAATTGAGGcc
caaaattgaatatctttgtaTCAAAATACTCTTATTAACTTTGAGAAATA
GCgaattttaaaccttttaaaacatttaaaaatacTTGTATGTACAATTT
TACAGAAAGATTGAAAATAGGATTAAATTGGTGTAATAACTTAAAACTAG
AAATAAAACATggtaaattcaaaacaaattgttattatcaacaaaatatt
tcttaaaaaaggtggaaaataaaaacaattttaaatttaCGAGCGAGAAC
TATTCATTAAAAAAGAACCGAACAGGATCAACAAAATCAATCATCCATTC
CACTATCAAAACTAGAGAAGGGACTTTCCCCAAGGACAGGAGTTCTCCTT
TTGCGAATGTGAGCAGGCAAAGGTGAATATCCCCCTGACATCTTTCGGTA
AGGTGCCTGTCTTCTACAAGGTCCAAGTCCATTATTCCAACTTTCCTGTT
CATTTTGACCTTCTTTGTCTTGATTAACTAAATGCATACTTTGCAGAGTC
ATCATAAGTTCGTTTTGGCTAGACAAAGGACTTGATTTCCAGTCTGGTGT
TTGACCATTCTGGGTAGCACACCCACCAGATTCAATGAATTGATTATGGT
TAAATTGTTGTTCGCCTATTTCATTTGGAGTCAGACTACGTTGAAGAAGC
TTCTGTAACTCCTGATATTCTTTTAGATATTGGTTTTCGGCCTTGTGTAA
CAAATGTCTGAATGGAGCATTCACACCATCTGAAGCACGTCTTCCTTCTT
TGAAACCAATATCTTTGTGCGCAAGTGGAGATATAGGAACAATTTTTGGT
TGGGCATTAGGTTGCAAAGTCATTGACATTGACGTTTGCTCGGTAACAGG
TACAGTGGGTTCAATAATTTGAATCTTGACTCTATTTGCAAATTCATTTC
CAGACTCAGGgggtttttcagaattttcttgTCTCAATAAAGGATGGTTT
GCAGGAACATATAATGTATCTGGATTTGGAGGACCTTGCACAGTATGCCT
CCTGCTATTGTTCATGTGTACCATGGCATCTACGGCTGACCGACGACCTC
TCCTCTTATTAGTTGGAGGTGGGTTTGATACTGGTTGTTCACCAACACAG
CCTTCTTCTGTAACAGTCTCAATATTTGATTGTGCCGATGAAACATGTGT
TGTGACATGGGAAAGTCTAGAAGTGTATGATGCTTGAGTTGTAATAGGGG
GAATAAATTCTGTAACACAACCAGGAACATTACTACTACATATTTCTGGA
GGAATCTTAACATCCCCAAGATGAAGTTCATTCAAAGCATACTGTAATTG
TGCATGTGGATTTCTACTTTGTGAAGAAGGAAGTCTATATTGTTGGTGAT
TAACGAGGGCTTGAACCCTATTGTTTCTAACAATAGCTTGATCAGCCATA
CAACTAGCACGCCTAATCCTGGTTCCGACATTGCTTTTTTCTGGATATGA
CGTGCGATGTTGCTTTAGCCTTTCACTGAGGAGATGGTAAATGGCACTGT
GGTGATCATATGCATTCTGCTCAACAGactgaaatgaagaaaatacGAGG
AATTAAACATTTCTAGCTTGGATTGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_203:107409..109867-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051732 ID=TCONS_00051732|Name=TCONS_00051732|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at scaffold_203:107409..109867- (Clytia hemisphaerica)
TTTTCTTTTTTGATTTTTGACATATTTTGTGTTTTTCATTGGCTCTGCCA
CGGGTCAACATAAAAAATAATTTACAAATTTTAGAAATTCCCTCTAAGTA
TTTTTCACTCTCAACGCTCAATTCAAATCTCACTAAAATCAAAAAAAAAA
AAGTTAAAATAACCAACAACTTCTATCTCACAATATAGTAATGACAATTT
TGTACAAAAAATAGTTTACGAGCTACCTTTATTTTCGAAAAATCAATAAG
ACGTAGAGTTCCGCCGATACTTAACCCTAATTAAGGTTATGTATATCAAA
AAAGACAAAAAAGAAGGAAGCTTGTAAAATATTTAACTTTGAAAAGCCCT
TGGTAGGTATTATCTGCAACTCGTTTGAGTTGACGTGGTATATGAAGTAG
AACTAAAAAATAATTTCTTTTGAAAAATAAAATAATTTAAAAATGTTATT
GTTATAAAATCAAAGGTAGTGACTGTGTGTAAATTTATTATAAGAAAAGG
GGGCAAGATATTTCAAAGCGTCAATTTTGGCATCTATCCAAGTATATGGT
TACTTGAGATAGCACCGAGTGTTTTGATTGAAGTCAAGTTGTCTTTTTTA
TATAAACAGACATAAAATACGTCTGTATGTAATTTCTTTTACGTCATTTT
ACCTTTTTGAGAACACATGACATGCACAGCTCACAGCAAGCATGTTGACA
AAGGTAAAAGAATTAAGAGATCCACTTTCTTATATCGCACACGAAATGAA
AAATCCAAAACAATATACACAATTTTTAACTCATAGGTTCATAGAGGGTG
TGAAAAAGTTTTGAAAGTAAAAATTAATTTGACAGCCACGGTATAATTAT
CGAAAATATTGCTAATAAATCAATTGAGGCCCAAAATTGAATATCTTTGT
ATCAAAATACTCTTATTAACTTTGAGAAATAGCGAATTTTAAACCTTTTA
AAACATTTAAAAATACTTGTATGTACAATTTTACAGAAAGATTGAAAATA
GGATTAAATTGGTGTAATAACTTAAAACTAGAAATAAAACATGGTAAATT
CAAAACAAATTGTTATTATCAACAAAATATTTCTTAAAAAAGGTGGAAAA
TAAAAACAATTTTAAATTTACGAGCGAGAACTATTCATTAAAAAAGAACC
GAACAGGATCAACAAAATCAATCATCCATTCCACTATCAAAACTAGAGAA
GGGACTTTCCCCAAGGACAGGAGTTCTCCTTTTGCGAATGTGAGCAGGCA
AAGGTGAATATCCCCCTGACATCTTTCGGTAAGGTGCCTGTCTTCTACAA
GGTCCAAGTCCATTATTCCAACTTTCCTGTTCATTTTGACCTTCTTTGTC
TTGATTAACTAAATGCATACTTTGCAGAGTCATCATAAGTTCGTTTTGGC
TAGACAAAGGACTTGATTTCCAGTCTGGTGTTTGACCATTCTGGGTAGCA
CACCCACCAGATTCAATGAATTGATTATGGTTAAATTGTTGTTCGCCTAT
TTCATTTGGAGTCAGACTACGTTGAAGAAGCTTCTGTAACTCCTGATATT
CTTTTAGATATTGGTTTTCGGCCTTGTGTAACAAATGTCTGAATGGAGCA
TTCACACCATCTGAAGCACGTCTTCCTTCTTTGAAACCAATATCTTTGTG
CGCAAGTGGAGATATAGGAACAATTTTTGGTTGGGCATTAGGTTGCAAAG
TCATTGACATTGACGTTTGCTCGGTAACAGGTACAGTGGGTTCAATAATT
TGAATCTTGACTCTATTTGCAAATTCATTTCCAGACTCAGGGGGTTTTTC
AGAATTTTCTTGTCTCAATAAAGGATGGTTTGCAGGAACATATAATGTAT
CTGGATTTGGAGGACCTTGCACAGTATGCCTCCTGCTATTGTTCATGTGT
ACCATGGCATCTACGGCTGACCGACGACCTCTCCTCTTATTAGTTGGAGG
TGGGTTTGATACTGGTTGTTCACCAACACAGCCTTCTTCTGTAACAGTCT
CAATATTTGATTGTGCCGATGAAACATGTGTTGTGACATGGGAAAGTCTA
GAAGTGTATGATGCTTGAGTTGTAATAGGGGGAATAAATTCTGTAACACA
ACCAGGAACATTACTACTACATATTTCTGGAGGAATCTTAACATCCCCAA
GATGAAGTTCATTCAAAGCATACTGTAATTGTGCATGTGGATTTCTACTT
TGTGAAGAAGGAAGTCTATATTGTTGGTGATTAACGAGGGCTTGAACCCT
ATTGTTTCTAACAATAGCTTGATCAGCCATACAACTAGCACGCCTAATCC
TGGTTCCGACATTGCTTTTTTCTGGATATGACGTGCGATGTTGCTTTAGC
CTTTCACTGAGGAGATGGTAAATGGCACTGTGGTGATCATATGCATTCTG
CTCAACAGACTGAAATGAAGAAAATACGAGGAATTAAACATTTCTAGCTT
GGATTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032753XLOC_032753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051732-exon-scaffold_203-1575043694:109583..109867TCONS_00051732-exon-scaffold_203-1575043694:109583..109867Clytia hemisphaericaexon
TCONS_00051732-exon-scaffold_203-1575043694:107409..109551TCONS_00051732-exon-scaffold_203-1575043694:107409..109551Clytia hemisphaericaexon
TCONS_00051732-exon-scaffold_203-1510915933:109583..109867TCONS_00051732-exon-scaffold_203-1510915933:109583..109867Clytia hemisphaericaexon
TCONS_00051732-exon-scaffold_203-1510915933:107409..109551TCONS_00051732-exon-scaffold_203-1510915933:107409..109551Clytia hemisphaericaexon
TCONS_00051732-exon-scaffold_203-1491911889:109583..109867TCONS_00051732-exon-scaffold_203-1491911889:109583..109867Clytia hemisphaericaexon
TCONS_00051732-exon-scaffold_203-1491911889:107409..109551TCONS_00051732-exon-scaffold_203-1491911889:107409..109551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_203supercontigscaffold_203:107409..109867 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246675	0.244904	0	0	0	0	0	0	0.829226	1.17689e-06	0	1.50388	2.57111e-07	5.46503	1.09894	0.46301	4.54488	0	3.22272	1.1746	0.000214596	1.05142e-06	2.1799	0	1.73849	0	1.11882	1.59059	4.60178	1.29023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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