TCONS_00051739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051739
Unique NameTCONS_00051739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051739 ID=TCONS_00051739|Name=TCONS_00051739|organism=Clytia hemisphaerica|type=transcript|length=756bp
cgcgaatcacgTCATGAATAGAGTTTTCAAAAACATTGACTTTCACGAGA
AATACTAAAGACTAAAAGTCGTGAAAACCGCCAAGTCCAGAGTTTCTTCT
TGCGAAAGAACTCACCGACCAAATTTGATTAGCTTTTCGATGGATTATAA
TCTCACATTTACTGATTAATAATGAACAGATACCTTGTAAACTACATCTC
TAATACTTTGATACCATCGTTCAACTAAGCACTAAGCTTGTTTACTTTGT
GCATTTCAGAGAGGATTATCTCCTAAGAACCAAACTTTCAAGTATGGAAT
AAATAAATACTCAGTAAAAAAGTCTTTACATTCTGGTATCATACAGACAG
TTAAGTTGCCAGATTTTCGTCATTCTTGTCTATGCAAGAATACTCTAAGG
TCcaaaagataaatacaaagaggGAAATTTAAAAGCTGTCAAAGCTACCT
ACGAGGTACAATATACAACTTAATGCAGGAAACATGCAATGGCCGTGCCT
TCAGACATACAAAGGATATTAGAGCATCTGGTCACATGCAGATAAACACG
TCAATTCGATTGGTTGAATGACGTCACCATAGAAATCAACTGTCAGCATA
AGAAATTAATATGACGAGTGAAGTTTCCTCTTTTATGAAATCGATTTTCA
ATCAACTGTTCTCCGATGAGATATTGTctgcaaaaatgattttgatattA
AAATTATCTTAACTTGCAGGGAATATCCCCTGTATATACTTATCCTGTCA
GCGAtt
Run BLAST on NCBI

transcript from alignment at scaffold_203:100812..101567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051739 ID=TCONS_00051739|Name=TCONS_00051739|organism=Clytia hemisphaerica|type=transcript|length=756bp|location=Sequence derived from alignment at scaffold_203:100812..101567 (Clytia hemisphaerica)
aaTCGCTGACAGGATAAGTATATACAGGGGATATTCCCTGCAAGTTAAGA TAATTTTaatatcaaaatcatttttgcagACAATATCTCATCGGAGAACA GTTGATTGAAAATCGATTTCATAAAAGAGGAAACTTCACTCGTCATATTA ATTTCTTATGCTGACAGTTGATTTCTATGGTGACGTCATTCAACCAATCG AATTGACGTGTTTATCTGCATGTGACCAGATGCTCTAATATCCTTTGTAT GTCTGAAGGCACGGCCATTGCATGTTTCCTGCATTAAGTTGTATATTGTA CCTCGTAGGTAGCTTTGACAGCTTTTAAATTTCcctctttgtatttatct tttgGACCTTAGAGTATTCTTGCATAGACAAGAATGACGAAAATCTGGCA ACTTAACTGTCTGTATGATACCAGAATGTAAAGACTTTTTTACTGAGTAT TTATTTATTCCATACTTGAAAGTTTGGTTCTTAGGAGATAATCCTCTCTG AAATGCACAAAGTAAACAAGCTTAGTGCTTAGTTGAACGATGGTATCAAA GTATTAGAGATGTAGTTTACAAGGTATCTGTTCATTATTAATCAGTAAAT GTGAGATTATAATCCATCGAAAAGCTAATCAAATTTGGTCGGTGAGTTCT TTCGCAAGAAGAAACTCTGGACTTGGCGGTTTTCACGACTTTTAGTCTTT AGTATTTCTCGTGAAAGTCAATGTTTTTGAAAACTCTATTCATGAcgtga ttcgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032759XLOC_032759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051739-exon-scaffold_203-1491911889:100812..101567TCONS_00051739-exon-scaffold_203-1491911889:100812..101567Clytia hemisphaericaexon
TCONS_00051739-exon-scaffold_203-1510915933:100812..101567TCONS_00051739-exon-scaffold_203-1510915933:100812..101567Clytia hemisphaericaexon
TCONS_00051739-exon-scaffold_203-1575043694:100812..101567TCONS_00051739-exon-scaffold_203-1575043694:100812..101567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_203supercontigscaffold_203:100812..101567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0648588 0 0 0.0718461 0.0874657 0.138233 0 0.234195 0.546552 0.947791 0.0657106 1.68463 0.258813 0.0895933 0.294632 0.237139 0.292135 0 0.344732 0.144295 0.188127 0.275286 0.148732 0 0.069636 0.435039 0.533605 0.094913 0.79187 0.366723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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